RchiOBHm_Chr1g0339731

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0003324
Physical Location & Seq
Forward (+)
31141673 .. 31142479
807 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGTTAAGTCACGTGGAGCACCAGCCTAGGAACAAGGAGCGTTGTGTTGCATGGCTTCGTTACGTAGAGCCGCTTTTTAATGGTGTTGGTCTGGTGTTACTAGCTCATTTCAGGCGCATTTTCCCTCTTTTCTTTAAGTGGATGCAAGCTGATGACGATGAGACTGTTTTACTAGTATTATTTAATTCATCGCTTCGCTTCATGAGGTTGGTGGATGAACTTGCTACTTTGCACAAAGAAGCAGCATTGAGAAGATCTCGTGAAGAAATTCGAAATCTTGTTATTCGTAAACTGATCTTGCTCCATCAATGCAAGGGTCTGCAGTTCGAAGTAGCCTGGGGCAAGCACAGGGATGATCCAAACTTGGCAACAATTGCTCCCTCTTTAAGTGAAAGAAGATCAACAATGGTAAGAATTAACCTTATTGCTGCTTTTACCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

17.27

Weight (kDa)

9.9

Isoelectric Point (pI)

44.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 71
AclWI GGATC 1 cut(s) 350
AcsI RAATTY 1 cut(s) 267
AcvI CACGTG 1 cut(s) 13
AhlI ACTAGT 1 cut(s) 172
AjnI CCWGG 1 cut(s) 335
AluBI AGCT 2 cut(s) 104, 149
AluI AGCT 2 cut(s) 104, 149
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 350
ApeKI GCWGC 2 cut(s) 242, 428
ApoI RAATTY 1 cut(s) 267
Asp700I GAANNNNTTC 1 cut(s) 267
AspA2I CCTAGG 1 cut(s) 26
AspLEI GCGC 1 cut(s) 117
AsuII TTCGAA 2 cut(s) 271, 327
AvrII CCTAGG 1 cut(s) 26
BauI CACGAG 1 cut(s) 258
BbrPI CACGTG 1 cut(s) 13
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 254, 415
BccI CCATC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 155
BcuI ACTAGT 1 cut(s) 172
BfaI CTAG 3 cut(s) 27, 101, 173
BfmI CTRYAG 1 cut(s) 320
BglII AGATCT 1 cut(s) 254
BisI GCNGC 3 cut(s) 71, 243, 429
BlnI CCTAGG 1 cut(s) 26
BlsI GCNGC 3 cut(s) 72, 244, 430
Bme1390I CCNGG 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 241, 273
Bpu14I TTCGAA 2 cut(s) 271, 327
BsaAI YACGTR 2 cut(s) 13, 64
BsaJI CCNNGG 2 cut(s) 26, 336
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
BseBI CCWGG 1 cut(s) 337
BseDI CCNNGG 2 cut(s) 26, 336
BseGI GGATG 3 cut(s) 147, 220, 358
BseXI GCAGC 2 cut(s) 254, 415
BsiHKAI GWGCWC 1 cut(s) 21
BsmAI GTCTC 1 cut(s) 155
Bsp119I TTCGAA 2 cut(s) 271, 327
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 4 cut(s) 254, 294, 355, 398
BspACI CCGC 1 cut(s) 71
BspHI TCATGA 1 cut(s) 201
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 1 cut(s) 350
BspT104I TTCGAA 2 cut(s) 271, 327
BssECI CCNNGG 2 cut(s) 26, 336
BssMI GATC 4 cut(s) 254, 294, 355, 398
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 26
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 166
BstAPI GCANNNNNTGC 1 cut(s) 374
BstBAI YACGTR 2 cut(s) 13, 64
BstBI TTCGAA 2 cut(s) 271, 327
BstC8I GCNNGC 2 cut(s) 147, 344
BstF5I GGATG 3 cut(s) 147, 220, 358
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 4 cut(s) 257, 297, 358, 401
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 4 cut(s) 254, 294, 355, 398
BstMWI GCNNNNNNNGC 1 cut(s) 374
BstNI CCWGG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 335
BstSFI CTRYAG 1 cut(s) 320
BstSNI TACGTA 1 cut(s) 64
BstV1I GCAGC 2 cut(s) 254, 415
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 3 cut(s) 147, 220, 358
Cac8I GCNNGC 2 cut(s) 147, 344
CciI TCATGA 1 cut(s) 201
CfoI GCGC 1 cut(s) 117
CviAII CATG 2 cut(s) 51, 202
CviJI RGCY 6 cut(s) 25, 55, 70, 104, 149, 335
CviKI_1 RGCY 6 cut(s) 25, 55, 70, 104, 149, 335
DpnI GATC 4 cut(s) 256, 296, 357, 400
DpnII GATC 4 cut(s) 254, 294, 355, 398
Eco105I TACGTA 1 cut(s) 64
Eco130I CCWWGG 1 cut(s) 26
Eco72I CACGTG 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 335
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaeI CATG 2 cut(s) 54, 205
FaiI YATR 4 cut(s) 52, 203, 440, 442
FatI CATG 2 cut(s) 50, 201
Fnu4HI GCNGC 3 cut(s) 71, 243, 429
FokI GGATG 3 cut(s) 154, 227, 365
Fsp4HI GCNGC 3 cut(s) 71, 243, 429
FspBI CTAG 3 cut(s) 27, 101, 173
GlaI GCGC 1 cut(s) 116
GluI GCNGC 3 cut(s) 71, 243, 429
HhaI GCGC 1 cut(s) 117
Hin1II CATG 2 cut(s) 54, 205
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
Hpy166II GTNNAC 1 cut(s) 290
Hpy188III TCNNGA 2 cut(s) 202, 260
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 166
HpyCH4IV ACGT 2 cut(s) 12, 63
HpyCH4V TGCA 5 cut(s) 50, 145, 232, 312, 322
HpyF10VI GCNNNNNNNGC 1 cut(s) 374
HpySE526I ACGT 2 cut(s) 12, 63
Hsp92II CATG 2 cut(s) 54, 205
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 4 cut(s) 254, 294, 355, 398
LmnI GCTCC 4 cut(s) 16, 37, 306, 382
LpnPI CCDG 6 cut(s) 35, 77, 97, 322, 334, 349
Lsp1109I GCAGC 2 cut(s) 254, 415
LweI GCATC 1 cut(s) 132
MaeI CTAG 3 cut(s) 27, 101, 173
MaeII ACGT 2 cut(s) 12, 63
MaeIII GTNAC 3 cut(s) 8, 59, 96
MalI GATC 4 cut(s) 256, 296, 357, 400
MboI GATC 4 cut(s) 254, 294, 355, 398
MboII GAAGA 3 cut(s) 264, 275, 408
MfeI CAATTG 1 cut(s) 372
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 4 cut(s) 184, 267, 372, 414
MnlI CCTC 3 cut(s) 135, 198, 391
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 6 cut(s) 5, 78, 135, 183, 386, 417
MslI CAYNNNNRTG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 337
MunI CAATTG 1 cut(s) 372
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 374
NdeII GATC 4 cut(s) 254, 294, 355, 398
NlaIII CATG 2 cut(s) 54, 205
NmuCI GTSAC 1 cut(s) 8
NspV TTCGAA 2 cut(s) 271, 327
PagI TCATGA 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 267
PkrI GCNGC 3 cut(s) 72, 244, 430
PmaCI CACGTG 1 cut(s) 13
PmlI CACGTG 1 cut(s) 13
Ppu21I YACGTR 2 cut(s) 13, 64
Psp6I CCWGG 1 cut(s) 335
PspCI CACGTG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 335
PstI CTGCAG 1 cut(s) 324
PsuI RGATCY 1 cut(s) 254
RseI CAYNNNNRTG 1 cut(s) 351
SaqAI TTAA 6 cut(s) 5, 78, 135, 183, 386, 417
SatI GCNGC 3 cut(s) 71, 243, 429
Sau3AI GATC 4 cut(s) 254, 294, 355, 398
ScrFI CCNGG 1 cut(s) 337
SduI GDGCHC 1 cut(s) 21
SetI ASST 6 cut(s) 15, 66, 106, 151, 209, 423
SfaNI GCATC 1 cut(s) 132
SfcI CTRYAG 1 cut(s) 320
SfuI TTCGAA 2 cut(s) 271, 327
SmiMI CAYNNNNRTG 1 cut(s) 351
SnaBI TACGTA 1 cut(s) 64
SpeI ACTAGT 1 cut(s) 172
Sse9I AATT 4 cut(s) 184, 267, 372, 414
SsiI CCGC 1 cut(s) 71
SspMI CTAG 3 cut(s) 27, 101, 173
StyD4I CCNGG 1 cut(s) 335
StyI CCWWGG 1 cut(s) 26
TaaI ACNGT 1 cut(s) 166
TaiI ACGT 2 cut(s) 15, 66
TaqI TCGA 2 cut(s) 271, 327
TasI AATT 4 cut(s) 184, 267, 372, 414
TauI GCSGC 1 cut(s) 73
Tru1I TTAA 6 cut(s) 5, 78, 135, 183, 386, 417
Tru9I TTAA 6 cut(s) 5, 78, 135, 183, 386, 417
TseFI GTSAC 1 cut(s) 8
TseI GCWGC 2 cut(s) 242, 428
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 177, 190, 231
XapI RAATTY 1 cut(s) 267
XmaJI CCTAGG 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 27, 101, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.