Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003939

Physical Location & Seq

Genomic Coordinates Reverse (-)

42421487 .. 42423193

Gene Structure 1707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1461 bp

ATGCTATCTTGGTCCAATTTGATATGTTTCTCTCACTATTCTGCAGCTTATCTGATTTACCCTCCCTCTAATATGGCAAAAAGAAGGGGTAACAGGACTCAATCTACATGTGGAAAACAAAACAAACTTCCAATCAATTTGGTACAGGATTGCATTAGCGTGCTGCCCGACGAAGTTCTAGTCCTCATTCTTTCCCTACTGAGTATTAAGGAAGCAGTAAGCACTTGCATCTTGTCTAAAAGGTGGAAAAATGTGTGGAAACAAATTACTTGTCTCAACTTCTTTTTAGATGAATTATCTAAAACAGAGAAGATAAAAATAGGAAGACAAGTAGTTGAAATACCTAGGACATACAACTGGGTGAATCAAGTCTTGCAATTGCATCAGGGTCAAATCTTAGATGAGTTCAAACTTTGTTCTTCTTCAATAGATTGCGATTCGACTTCTGAAATCGACAGCTGGATCGAATTGGTAATACAGAAGAAAGTACGAAAGTTTGAGATAGACCTGCAAGGAGATAGAGGTGTAGCTCCGTATTGTTCCCATTATACATTTCCAGAGAATCTATTTCGAAACCCTTTTGGTGTTTCATGGTTTTCCTGGCTTACACACCTTTCTTTGAACTATGTGAATATAACTAGTGAACTAGTCGAGCACTTCATATCAAACTGCCAACTTCTCGAACACCTGTTTATTGCTGGCTCGGAGTATTTAGAAGATTTGAAAGTTGTTGGTGAGTTGCTTCGGCTTAAGTTCCTTCAGATATGTGATTGCCTTAACTTATTTCAGCTTGAGATATCTGCTCCTTGTCTGGAGACATTCTTTTATGATGGAGAATGTCGCTATAACATCAATATTCGTGTGACGTATGCACCCTTGCTTGCTAAGATATGTATAACAGAAGACTTTCTGTTTGACTCTACAACTGGAGATTTTCAATTGTTTTGGAATTATCTTCCTCAGTTAGTGACTCTCAGGTTGGTCCTAGAGAAAGAGCCAAAGTTGGTCCCTGAATTTCCAGAATTAACTAGTCTCGAGTTCTTATCATTGAGCATTGCCAGAATTAATAGGCGAAGCCTTCTTCTTTTGACTTCTTTGATCGAGGGATCTCCTTACTTGCATAGATTTAAATTGAGGTTGAGACGGAGTTTGATGGGATGCAGGCATCGGAGAAGCAAGGTAATTAGTGAGGCGAATACAAGTCCTCATCAGTGTCTTAAGGTGGTCGAACTTTCTGGATTCAGTGGGTCGAAACATGAAACTGAGGTTGCCAGGTACTTAATTAAGAAAGCTGTTGCGCTTAAAAAATTAATTATCGATCTGGACTCGAAGCGCATTCTGGAGGAGATCAACCCTTTACGTCCGCTGTCAACCAAAATCAAAGAACTGGAGATGGCAAGAAAGCATGCTTTACTGCTTGAAAAAAAATTACCCCTCGGAGGTGAGTTAATTGTTTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD

Protein Analysis

486

Amino Acids

56.12

Weight (kDa)

8.57

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	52 - 88	8e-07	F-box domain
LRR_At1g61320_AtMIF1	PF23622	124 - 444	7.6e-25	At1g61320/AtMIF1, LRR domain
LRR_At5g56370	PF24758	198 - 295	5.2e-09	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	404 - 439	1.5e-08	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003939)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27810
malus_domestica	MD02G1120400.v1.1 MD02G1120500.v1.1
prunus_persica	Prupe.1G495700_v2.0.a1 Prupe.1G495800_v2.0.a1 Prupe.1G495900_v2.0.a1 Prupe.1G496000_v2.0.a1 Prupe.1G496200_v2.0.a1 Prupe.1G496300_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496400_v2.0.a1 Prupe.1G496600_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.1G496800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G136800_v2.0.a1 Prupe.3G257200_v2.0.a1
pyrus_communis	pycom02g09400
rosa_chinensis	RchiOBHm_Chr1g0349301 RchiOBHm_Chr6g0295841
rosa_laevigata	RLG00000028560
rosa_multiflora	Rmu_sc0000827.1_g000005 Rmu_sc0002914.1_g000007 Rmu_sc0025718.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305670 Rroxscaffold_6G00388420
rosa_rugosa	Rorug01G0202400
rosa_samantha	Rh1AG220000 Rh1BG186100 Rh1CG205100
rosa_wichuraiana	Rw1G018680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1459
Acc36I	ACCTGC	1 cut(s)	516
AciI	CCGC	1 cut(s)	1364
AclWI	GGATC	2 cut(s)	470, 1114
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	1 cut(s)	743
AfaI	GTAC	3 cut(s)	144, 489, 1277
AfiI	CCNNNNNNNGG	1 cut(s)	1439
AflII	CTTAAG	2 cut(s)	749, 1217
AflIII	ACRYGT	1 cut(s)	107
AgsI	TTSAA	7 cut(s)	338, 409, 426, 622, 724, 938, 1421
AhlI	ACTAGT	3 cut(s)	638, 646, 1028
AjnI	CCWGG	2 cut(s)	599, 1271
AluBI	AGCT	5 cut(s)	47, 459, 530, 790, 1292
AluI	AGCT	5 cut(s)	47, 459, 530, 790, 1292
Alw21I	GWGCWC	1 cut(s)	657
Alw26I	GTCTC	4 cut(s)	278, 809, 1037, 1135
AlwI	GGATC	2 cut(s)	470, 1114
Ama87I	CYCGRG	1 cut(s)	1034
ApeKI	GCWGC	2 cut(s)	44, 163
ApoI	RAATTY	1 cut(s)	1013
ArsI	GACNNNNNNTTYG	6 cut(s)	165, 197, 256, 288, 896, 928
AseI	ATTAAT	2 cut(s)	1065, 1310
Asp700I	GAANNNNTTC	1 cut(s)	906
AspA2I	CCTAGG	1 cut(s)	344
AspLEI	GCGC	2 cut(s)	1300, 1335
AspS9I	GGNCC	3 cut(s)	12, 982, 1006
AsuHPI	GGTGA	3 cut(s)	373, 746, 1454
AsuII	TTCGAA	1 cut(s)	571
AvaI	CYCGRG	1 cut(s)	1034
AvaII	GGWCC	3 cut(s)	12, 982, 1006
AvrII	CCTAGG	1 cut(s)	344
BbsI	GAAGAC	2 cut(s)	331, 909
Bbv12I	GWGCWC	1 cut(s)	657
BbvI	GCAGC	2 cut(s)	56, 150
BccI	CCATC	3 cut(s)	824, 1147, 1387
BciT130I	CCWGG	2 cut(s)	601, 1273
BcoDI	GTCTC	4 cut(s)	278, 809, 1037, 1135
BcuI	ACTAGT	3 cut(s)	638, 646, 1028
BfaI	CTAG	6 cut(s)	179, 345, 639, 647, 986, 1029
BfmI	CTRYAG	1 cut(s)	42
BfrI	CTTAAG	2 cut(s)	749, 1217
BfuAI	ACCTGC	1 cut(s)	516
BisI	GCNGC	2 cut(s)	45, 164
BlnI	CCTAGG	1 cut(s)	344
BlsI	GCNGC	2 cut(s)	46, 165
Bme1390I	CCNGG	2 cut(s)	601, 1273
Bme18I	GGWCC	3 cut(s)	12, 982, 1006
BmeT110I	CYCGRG	1 cut(s)	1034
BmgT120I	GGNCC	3 cut(s)	12, 982, 1006
BmiI	GGNNCC	1 cut(s)	1008
BmrFI	CCNGG	2 cut(s)	601, 1273
BmrI	ACTGGG	1 cut(s)	367
BmsI	GCATC	4 cut(s)	237, 391, 1148, 1174
BmuI	ACTGGG	1 cut(s)	367
BpiI	GAAGAC	2 cut(s)	331, 909
BpmI	CTGGAG	4 cut(s)	833, 948, 1361, 1409
Bpu14I	TTCGAA	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	812
Bsa29I	ATCGAT	1 cut(s)	1317
BsaJI	CCNNGG	2 cut(s)	344, 1435
Bsc4I	CCNNNNNNNGG	1 cut(s)	1439
Bse1I	ACTGG	3 cut(s)	362, 931, 1392
Bse3DI	GCAATG	1 cut(s)	1053
BseBI	CCWGG	2 cut(s)	601, 1273
BseCI	ATCGAT	1 cut(s)	1317
BseDI	CCNNGG	2 cut(s)	344, 1435
BseGI	GGATG	1 cut(s)	1163
BseLI	CCNNNNNNNGG	1 cut(s)	1439
BseMI	GCAATG	1 cut(s)	1053
BseMII	CTCAG	4 cut(s)	191, 974, 988, 1254
BseNI	ACTGG	3 cut(s)	362, 931, 1392
BseRI	GAGGAG	1 cut(s)	1358
BseXI	GCAGC	2 cut(s)	56, 150
BshVI	ATCGAT	1 cut(s)	1317
BsiHKAI	GWGCWC	1 cut(s)	657
BsiHKCI	CYCGRG	1 cut(s)	1034
BslFI	GGGAC	1 cut(s)	992
BslI	CCNNNNNNNGG	1 cut(s)	1439
BsmAI	GTCTC	4 cut(s)	278, 809, 1037, 1135
BsmBI	CGTCTC	1 cut(s)	1135
BsmFI	GGGAC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	1335
BsoBI	CYCGRG	1 cut(s)	1034
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	657
Bsp143I	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
BspACI	CCGC	1 cut(s)	1364
BspCNI	CTCAG	4 cut(s)	192, 973, 987, 1255
BspDI	ATCGAT	1 cut(s)	1317
BspLI	GGNNCC	1 cut(s)	1008
BspMAI	CTGCAG	1 cut(s)	46
BspMI	ACCTGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	470, 1114
BspT104I	TTCGAA	1 cut(s)	571
BspTI	CTTAAG	2 cut(s)	749, 1217
BsrDI	GCAATG	1 cut(s)	1053
BsrI	ACTGG	3 cut(s)	362, 931, 1392
BssECI	CCNNGG	2 cut(s)	344, 1435
BssMI	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
BssT1I	CCWWGG	1 cut(s)	344
Bst2UI	CCWGG	2 cut(s)	601, 1273
BstAFI	CTTAAG	2 cut(s)	749, 1217
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	5 cut(s)	161, 700, 882, 1163, 1407
BstDEI	CTNAG	6 cut(s)	200, 397, 885, 960, 974, 1263
BstF5I	GGATG	1 cut(s)	1163
BstHHI	GCGC	2 cut(s)	1300, 1335
BstKTI	GATC	5 cut(s)	465, 1101, 1109, 1321, 1350
BstMAI	GTCTC	4 cut(s)	278, 809, 1037, 1135
BstMBI	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
BstNI	CCWGG	2 cut(s)	601, 1273
BstNSI	RCATGY	2 cut(s)	111, 1409
BstSCI	CCNGG	2 cut(s)	599, 1271
BstSFI	CTRYAG	1 cut(s)	42
BstV1I	GCAGC	2 cut(s)	56, 150
BstV2I	GAAGAC	2 cut(s)	331, 909
BstX2I	RGATCY	1 cut(s)	1106
BstYI	RGATCY	1 cut(s)	1106
Bsu15I	ATCGAT	1 cut(s)	1317
BsuTUI	ATCGAT	1 cut(s)	1317
BtsCI	GGATG	1 cut(s)	1163
BtsIMutI	CAGTG	2 cut(s)	1217, 1249
BveI	ACCTGC	1 cut(s)	516
Cac8I	GCNNGC	5 cut(s)	161, 700, 882, 1163, 1407
CfoI	GCGC	2 cut(s)	1300, 1335
Cfr13I	GGNCC	3 cut(s)	12, 982, 1006
ClaI	ATCGAT	1 cut(s)	1317
Csp6I	GTAC	3 cut(s)	143, 488, 1276
CviAII	CATG	4 cut(s)	108, 591, 1256, 1406
CviQI	GTAC	3 cut(s)	143, 488, 1276
DdeI	CTNAG	6 cut(s)	200, 397, 885, 960, 974, 1263
DpnI	GATC	5 cut(s)	464, 1100, 1108, 1320, 1349
DpnII	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
DraI	TTTAAA	1 cut(s)	1129
Eco130I	CCWWGG	1 cut(s)	344
Eco32I	GATATC	1 cut(s)	798
Eco47I	GGWCC	3 cut(s)	12, 982, 1006
Eco57I	CTGAAG	1 cut(s)	743
Eco88I	CYCGRG	1 cut(s)	1034
EcoRII	CCWGG	2 cut(s)	599, 1271
EcoRV	GATATC	1 cut(s)	798
EcoT14I	CCWWGG	1 cut(s)	344
ErhI	CCWWGG	1 cut(s)	344
Esp3I	CGTCTC	1 cut(s)	1135
FaeI	CATG	4 cut(s)	111, 594, 1259, 1409
FaqI	GGGAC	1 cut(s)	992
FatI	CATG	4 cut(s)	107, 590, 1255, 1405
Fnu4HI	GCNGC	2 cut(s)	45, 164
FokI	GGATG	1 cut(s)	1170
Fsp4HI	GCNGC	2 cut(s)	45, 164
FspBI	CTAG	6 cut(s)	179, 345, 639, 647, 986, 1029
GlaI	GCGC	2 cut(s)	1299, 1334
GluI	GCNGC	2 cut(s)	45, 164
GsuI	CTGGAG	4 cut(s)	833, 948, 1361, 1409
HhaI	GCGC	2 cut(s)	1300, 1335
Hin1II	CATG	4 cut(s)	111, 594, 1259, 1409
Hin6I	GCGC	2 cut(s)	1298, 1333
HinP1I	GCGC	2 cut(s)	1298, 1333
HincII	GTYRAC	1 cut(s)	1371
HindII	GTYRAC	1 cut(s)	1371
HinfI	GANTC	8 cut(s)	97, 364, 437, 562, 917, 970, 1239, 1325
HphI	GGTGA	3 cut(s)	373, 746, 1454
Hpy166II	GTNNAC	2 cut(s)	644, 1371
Hpy188I	TCNGA	6 cut(s)	54, 448, 706, 762, 1170, 1439
Hpy188III	TCNNGA	8 cut(s)	557, 680, 812, 1019, 1034, 1236, 1322, 1340
Hpy8I	GTNNAC	2 cut(s)	644, 1371
Hpy99I	CGWCG	1 cut(s)	173
HpyAV	CCTTC	3 cut(s)	78, 767, 1088
HpyCH4IV	ACGT	2 cut(s)	866, 1360
HpyCH4V	TGCA	9 cut(s)	44, 153, 228, 376, 382, 511, 872, 1120, 1161
HpyF3I	CTNAG	6 cut(s)	200, 397, 885, 960, 974, 1263
HpySE526I	ACGT	2 cut(s)	866, 1360
Hsp92II	CATG	4 cut(s)	111, 594, 1259, 1409
HspAI	GCGC	2 cut(s)	1298, 1333
Kzo9I	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
LmnI	GCTCC	2 cut(s)	535, 808
Lsp1109I	GCAGC	2 cut(s)	56, 150
LweI	GCATC	4 cut(s)	237, 391, 1148, 1174
MaeI	CTAG	6 cut(s)	179, 345, 639, 647, 986, 1029
MaeII	ACGT	2 cut(s)	866, 1360
MaeIII	GTNAC	3 cut(s)	89, 862, 967
MalI	GATC	5 cut(s)	464, 1100, 1108, 1320, 1349
MboI	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
MboII	GAAGA	9 cut(s)	322, 336, 411, 414, 493, 728, 914, 947, 1073
MfeI	CAATTG	2 cut(s)	377, 938
MflI	RGATCY	1 cut(s)	1106
MhlI	GDGCHC	1 cut(s)	657
MlyI	GAGTC	4 cut(s)	91, 911, 964, 1319
MroXI	GAANNNNTTC	1 cut(s)	906
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	2 cut(s)	459, 1366
MspCI	CTTAAG	2 cut(s)	749, 1217
MspR9I	CCNGG	2 cut(s)	601, 1273
MunI	CAATTG	2 cut(s)	377, 938
Mva1269I	GAATGC	1 cut(s)	1335
MvaI	CCWGG	2 cut(s)	601, 1273
NdeII	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
NlaIII	CATG	4 cut(s)	111, 594, 1259, 1409
NlaIV	GGNNCC	1 cut(s)	1008
NmuCI	GTSAC	2 cut(s)	862, 967
NspI	RCATGY	2 cut(s)	111, 1409
NspV	TTCGAA	1 cut(s)	571
PacI	TTAATTAA	1 cut(s)	1284
PaeI	GCATGC	1 cut(s)	1409
PaeR7I	CTCGAG	1 cut(s)	1034
PciI	ACATGT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	1335
PdmI	GAANNNNTTC	1 cut(s)	906
PfeI	GAWTC	4 cut(s)	364, 437, 562, 1239
PkrI	GCNGC	2 cut(s)	46, 165
PleI	GAGTC	4 cut(s)	91, 911, 964, 1319
PpsI	GAGTC	4 cut(s)	91, 911, 964, 1319
PscI	ACATGT	1 cut(s)	107
PshBI	ATTAAT	2 cut(s)	1065, 1310
PsiI	TTATAA	1 cut(s)	1459
Psp6I	CCWGG	2 cut(s)	599, 1271
PspGI	CCWGG	2 cut(s)	599, 1271
PspN4I	GGNNCC	1 cut(s)	1008
PspPI	GGNCC	3 cut(s)	12, 982, 1006
PstI	CTGCAG	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	1106
PvuII	CAGCTG	1 cut(s)	459
RsaI	GTAC	3 cut(s)	144, 489, 1277
RsaNI	GTAC	3 cut(s)	143, 488, 1276
RseI	CAYNNNNRTG	1 cut(s)	158
SatI	GCNGC	2 cut(s)	45, 164
Sau3AI	GATC	5 cut(s)	462, 1098, 1106, 1318, 1347
Sau96I	GGNCC	3 cut(s)	12, 982, 1006
SchI	GAGTC	4 cut(s)	91, 911, 964, 1319
ScrFI	CCNGG	2 cut(s)	601, 1273
SduI	GDGCHC	1 cut(s)	657
SfaNI	GCATC	4 cut(s)	237, 391, 1148, 1174
SfcI	CTRYAG	1 cut(s)	42
Sfr274I	CTCGAG	1 cut(s)	1034
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	3 cut(s)	12, 982, 1006
SlaI	CTCGAG	1 cut(s)	1034
SmiI	ATTTAAAT	1 cut(s)	1129
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	4 cut(s)	749, 791, 1034, 1217
SmoI	CTYRAG	4 cut(s)	749, 791, 1034, 1217
SpeI	ACTAGT	3 cut(s)	638, 646, 1028
SphI	GCATGC	1 cut(s)	1409
SsiI	CCGC	1 cut(s)	1364
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	6 cut(s)	179, 345, 639, 647, 986, 1029
StyD4I	CCNGG	2 cut(s)	599, 1271
StyI	CCWWGG	1 cut(s)	344
SwaI	ATTTAAAT	1 cut(s)	1129
TaiI	ACGT	2 cut(s)	869, 1363
TfiI	GAWTC	4 cut(s)	364, 437, 562, 1239
TscAI	CASTG	2 cut(s)	1217, 1249
TseFI	GTSAC	2 cut(s)	862, 967
TseI	GCWGC	2 cut(s)	44, 163
Tsp45I	GTSAC	2 cut(s)	862, 967
TspDTI	ATGAA	4 cut(s)	306, 579, 649, 1272
TspGWI	ACGGA	2 cut(s)	522, 1159
TspRI	CASTG	2 cut(s)	1217, 1249
Vha464I	CTTAAG	2 cut(s)	749, 1217
VpaK11BI	GGWCC	3 cut(s)	12, 982, 1006
VspI	ATTAAT	2 cut(s)	1065, 1310
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	2 cut(s)	111, 1409
XhoI	CTCGAG	1 cut(s)	1034
XmaJI	CCTAGG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	906
XspI	CTAG	6 cut(s)	179, 345, 639, 647, 986, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.