RchiOBHm_Chr1g0367371

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004250
Physical Location & Seq
Forward (+)
57686885 .. 57690884
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 378 bp
ATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGGGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCGTCCCGGGTTTAAAGATGAAGTTCTTATCAACTTCATTCATGGTCTTTTGGATGTAAAGGTGCTTACTCTTGAGGAGCCTGAACGTGGTCTTACCATCGTCAAGCTAACGCATGTGGATTTTCCTGAAGAAGACAGTGGCAGTCCATCACATCCAACAGCAAATGAAGCTTCCACTAACACAAAAGAAACTTCCAAGCAGATTAACCAATGGATGACACTGATGAAGATCTCATGTACTGATTGGTTCAAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

125

Amino Acids

14.28

Weight (kDa)

5.68

Isoelectric Point (pI)

31.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 2 cut(s) 100, 358
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 49, 370
AluBI AGCT 2 cut(s) 226, 290
AluI AGCT 2 cut(s) 226, 290
Ama87I CYCGRG 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 126, 127
AsuHPI GGTGA 1 cut(s) 13
AvaI CYCGRG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 258
BccI CCATC 2 cut(s) 224, 274
BcnI CCSGG 2 cut(s) 126, 127
BfmI CTRYAG 1 cut(s) 57
BglII AGATCT 1 cut(s) 348
Bme1390I CCNGG 2 cut(s) 126, 127
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 126, 127
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 126, 127
BsaBI GATNNNNATC 1 cut(s) 347
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 206
Bse8I GATNNNNATC 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 4 cut(s) 91, 178, 271, 339
BseJI GATNNNNATC 1 cut(s) 347
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 8, 257
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 4 cut(s) 91, 178, 271, 339
BstKTI GATC 1 cut(s) 351
BstMBI GATC 1 cut(s) 348
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 124, 125
BstSFI CTRYAG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 348
BstYI RGATCY 1 cut(s) 348
BtsCI GGATG 4 cut(s) 91, 178, 271, 339
BtsIMutI CAGTG 2 cut(s) 262, 338
Cfr9I CCCGGG 1 cut(s) 125
CseI GACGC 1 cut(s) 110
Csp6I GTAC 2 cut(s) 99, 357
CviAII CATG 5 cut(s) 64, 96, 161, 233, 354
CviJI RGCY 4 cut(s) 32, 199, 226, 290
CviKI_1 RGCY 4 cut(s) 32, 199, 226, 290
CviQI GTAC 2 cut(s) 99, 357
DdeI CTNAG 1 cut(s) 117
DpnI GATC 1 cut(s) 350
DpnII GATC 1 cut(s) 348
DraI TTTAAA 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 125
FaeI CATG 5 cut(s) 67, 99, 164, 236, 357
FaiI YATR 7 cut(s) 27, 65, 80, 97, 162, 234, 355
FaqI GGGAC 1 cut(s) 108
FatI CATG 5 cut(s) 63, 95, 160, 232, 353
FblI GTMKAC 1 cut(s) 60
FokI GGATG 4 cut(s) 78, 185, 258, 346
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 110
Hin1II CATG 5 cut(s) 67, 99, 164, 236, 357
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 1 cut(s) 36
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 191, 245
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 2 cut(s) 8, 257
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 4, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 5 cut(s) 67, 99, 164, 236, 357
Kzo9I GATC 1 cut(s) 348
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 46, 139, 213, 258
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 19, 112
MalI GATC 1 cut(s) 350
MboI GATC 1 cut(s) 348
MboII GAAGA 3 cut(s) 260, 263, 358
MflI RGATCY 1 cut(s) 348
MluCI AATT 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 3 cut(s) 50, 60, 187
MseI TTAA 2 cut(s) 132, 324
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 126, 127
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 2 cut(s) 126, 127
NdeII GATC 1 cut(s) 348
NlaIII CATG 5 cut(s) 67, 99, 164, 236, 357
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 236
PfeI GAWTC 1 cut(s) 36
PspN4I GGNNCC 1 cut(s) 198
PsuI RGATCY 1 cut(s) 348
RsaI GTAC 2 cut(s) 100, 358
RsaNI GTAC 2 cut(s) 99, 357
SaqAI TTAA 2 cut(s) 132, 324
Sau3AI GATC 1 cut(s) 348
ScrFI CCNGG 2 cut(s) 126, 127
SetI ASST 5 cut(s) 26, 183, 208, 228, 292
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 57
SmaI CCCGGG 1 cut(s) 127
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 124, 125
TaaI ACNGT 2 cut(s) 8, 257
TaiI ACGT 1 cut(s) 208
TasI AATT 1 cut(s) 52
TatI WGTACW 2 cut(s) 98, 356
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 2 cut(s) 132, 324
Tru9I TTAA 2 cut(s) 132, 324
TscAI CASTG 2 cut(s) 262, 345
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 6 cut(s) 42, 145, 149, 153, 300, 359
TspMI CCCGGG 1 cut(s) 125
TspRI CASTG 2 cut(s) 262, 345
XceI RCATGY 1 cut(s) 236
XmaI CCCGGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.