Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Forward (+)

21427965 .. 21439592

Gene Structure 11628 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0125000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2709 bp

ATGGCGCCGGAGCGTTCCTCTGCGAGCTTCTGGACTCAGTCCAATGCCTTGCTCAAAAAGAGCTTAACATATCAGAAAAGAAACATCCGCTCCAATATCATGCTGATTTTAATACCCTTTTTCTTCATCCTCAGTTTGGCTGCCCTCCAAAGTCTGCAGAAGAATGTGAACAAACAATTATCAAAACCCGATTGTGGATCTTCAGACCAATTTGATCTAACTTTATCTTGTCCCATACCTCAGCCTCAAGAATGGGCTCCATTGTTGCAGTTACCATCTCGAGATTACCGTGCAGTAAGAAGTAACTCTCTTCCATCTGACTTGCCGGATGAGTCATGCCGGAGTAGGCATGATGAAAGAGGCTACTCCTCCTGCCCGGTAACACTACTTCTTACTGGGAATAATCAGTCTTTAGGAGAAACTCTGGCTGGAAATATGTTGTTGAATTCTCCCCCGCCGAAATCCGCTGGTGATGGCATGGAATATATAGCGCATAATGTCATGGGTTCGGATTCCTCACCTCAAGAGAACATGTTTCATGACTATGACTGGTCTAAGGATGTTGTGACCATCTATAATGTGCAGCGCCACTGCTCACCAAATTCTTCATTCTATCTTCCAGTTCGAGAAGCAAGTTTGCAACCAAAAATATTTGTTGAATGTGTTGAAGGTTTGCCTTTGTGGCGCAATACTTCTACCGAAGTAAACAATGAGCTATATAGAGGTTACAGAAATGGGAATTCAGAGGGGAAGATTAATGAAGTACTTGGAGCCTATGATTTCTCCAACTCAGATAAGAATAATTTCAATGTGAGCGTATGGTACAATTCAAGCTTGAAATCTGGAGATGATGATGTTGGCGAGGTGCTGAGCGGGGCTGGGAGTGATTCTAAATTGTTGCGGCTTCCACGTGCAGTGAATCTGGCCTCCAGTGCCTACCTACGGTTCTTGAAAGGTTTTGGAACAAATATGCTGCTTGATTTTGTCAAAGAAATGCCCAAGCAGGAAACCCCATTCCAGATGCCAGATATTGCCTCTATGATTGGTCCACTCTTCTTTACATGGGTTATCTTACTGCTCTTCCCTGTTGTGATGAAGTCGCTGGTGTACGAAAAACAACAAAAACTCAGAATCATGATGAAAATGCATGGACTTGGTGATGGACCCTATTGGATGATTTCCTATGCCTATTTTCTTACAGTATCTGTAGTGTACATGCTATGTCTTGTTATATCTGGCTCACTTATCGTTATAGGTTACATATTGGTCTTTGCAACCGGGCTTTTTGGTTCAGAACTTTTTCAAGCCTTTATAGAAGATCCATCATTCCCTAGATACTGGATCATTGTTCTTGAGTTGTATCCTGGCTTGTCTCTGTATCGTGGGTTATATGAGTTTGCAGAATTCACCCCTGAAGCAAGTACTGTTGGGATGCGATGGGGAAATTTGAGACACAGCAAGAGTGGGATGAGAGAAGTCTTTATTGTCATGTTTGTGGAGTGGTTTGTGCTGATTTTTGTTGCATATAACTTGGATAAACTTACATCATCTGTAAGTGGAAAAAGTCCTCTATTTTTCTTGCAAAGCTGCTTTGGAAAGAATAAAGAACATTCCTCGTCTCTTGGGAGTGGGACGCCTAGTGCACAATGGCAGGGATCTACAGTTTCTATTCAGATGGACAAACCTGATGTTACTCAAGAGATGGAGAAGGTTGAGAGTTTGCTATTGGATCAAGATAGTACAAGTCACGCGATCATCTGCCATGACCTGAAAAAGGTGTATCCAGGAAGAGATGGAAACCCTGAGAAGTTTGCAGTGAAAGGGTTATCTCTTGCTTTGCCACGAGGAGAATGCTTTGGCATGCTTGGTCCCAATGGTGCAGGGAAGACCTCTTTTATTAGCATGATGATTGGTCTGACAAAACCAAGCTCTGGTGCGGCATATGTTCATGGTATGGACATTTGGACTCAGATGGATGAAATATATACCAGCATGGGTGTTTGTCCACAGCACGACTTACTATGGGAGAGCCTGACTGGGAGAGAGCATTTGCTGTTTTATGGCAGACTTAAGAATCTCAAAGGTTCTGCCTTAATAGAAGCTGTGGAAGAGTCTTTGAAGAGTGTGAATCTGTTCTATGGTGGAGTTGCAGACAAACAGGCTGGGAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTTGCAATTTCACTCATAGGGGATCCGAAGGTTGTTTACATGGATGAGCCTAGTACTGGACTAGATCCAGCTTCAAGAAACCATCTATGGAATGTTGTAAAGGCGGCGAAACAGGACCGAGCAATCCTCTTAACCACACATTCCATGGAAGAGGCAGAGGTTCTCTGTGATCGACTAGGAATTTTTGTAGATGGCAGATTGCAGTGTATTGGAAATCCGAAAGAGCTGAAGGCTAGATATGGAGGATCGTATATCTTCACAATGACCACAAGTGGGGATCATGAGGAAGAAGTGGAGAAGATGGTTCGGACGATCTCACCCAACGCCAACAAGGTATACCGACTCTCAGGGACACAGAAGTTTGAGCTGCCCAAAAATGAGGTCACTATCGCCCATGTCTTCCAAGCTGTGGAGGCTGCAAAGCGGCAATTCACAGTGTTCGCTTGGGGTCTCACTGACACTACTTTGGAGGATGTCTTCATCAAGGTTGCTACAACCGCTTCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0008139 GO:0008150 GO:0008152 GO:0008270 GO:0009636 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032182 GO:0032446 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0042493 GO:0043130 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045471 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04014 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04014 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

BRAP2 zf-RING_2 zf-UBP

Protein Analysis

902

Amino Acids

100.62

Weight (kDa)

6.29

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	607 - 751	4.9e-23	ABC transporter
AAA_21	PF13304	720 - 783	9.4e-08	AAA domain, putative AbiEii toxin, Type IV TA system
ABCA12_C	PF24526	817 - 867	2.2e-27	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	2 cut(s)	1931, 2608
AccBSI	CCGCTC	2 cut(s)	90, 873
AccI	GTMKAC	1 cut(s)	2535
AccII	CGCG	1 cut(s)	1751
AciI	CCGC	9 cut(s)	88, 455, 465, 873, 901, 1937, 2303, 2623, 2697
AcsI	RAATTY	6 cut(s)	445, 601, 739, 1403, 1444, 2379
AcuI	CTGAAG	3 cut(s)	186, 1434, 2447
AcvI	CACGTG	1 cut(s)	911
AcyI	GRCGYC	2 cut(s)	5, 1634
AfaI	GTAC	7 cut(s)	765, 824, 1109, 1214, 1423, 1741, 2254
AfiI	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1774, 1931, 2255, 2472, 2608
AflII	CTTAAG	1 cut(s)	2069
AflIII	ACRYGT	1 cut(s)	531
AjnI	CCWGG	2 cut(s)	1363, 1783
Alw21I	GWGCWC	1 cut(s)	1645
Alw26I	GTCTC	4 cut(s)	1377, 1444, 1623, 2654
Alw44I	GTGCAC	1 cut(s)	1641
AlwNI	CAGNNNCTG	1 cut(s)	1205
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	1 cut(s)	924
ApaLI	GTGCAC	1 cut(s)	1641
ApeKI	GCWGC	6 cut(s)	140, 583, 973, 1587, 2566, 2615
ApoI	RAATTY	6 cut(s)	445, 601, 739, 1403, 1444, 2379
ArsI	GACNNNNNNTTYG	2 cut(s)	2565, 2597
AseI	ATTAAT	1 cut(s)	756
Asp700I	GAANNNNTTC	3 cut(s)	803, 1299, 2132
AspLEI	GCGC	4 cut(s)	7, 493, 588, 687
AspS9I	GGNCC	4 cut(s)	1046, 1163, 1868, 2314
AsuC2I	CCSGG	2 cut(s)	377, 1279
AsuHPI	GGTGA	6 cut(s)	482, 510, 588, 1169, 1399, 2508
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	4 cut(s)	1046, 1163, 1868, 2314
BaeGI	GKGCMC	1 cut(s)	1645
BamHI	GGATCC	1 cut(s)	2221
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	259
BarI	GAAGNNNNNNTAC	4 cut(s)	372, 404, 2219, 2251
BauI	CACGAG	1 cut(s)	1842
BbrPI	CACGTG	1 cut(s)	911
BbsI	GAAGAC	3 cut(s)	1892, 2590, 2668
Bbv12I	GWGCWC	1 cut(s)	1645
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	6 cut(s)	127, 595, 960, 1574, 2553, 2602
BcgI	CGANNNNNNTGC	2 cut(s)	1833, 1867
BciT130I	CCWGG	2 cut(s)	1365, 1785
BciVI	GTATCC	2 cut(s)	1371, 1791
BcnI	CCSGG	2 cut(s)	377, 1279
BcoDI	GTCTC	4 cut(s)	1377, 1444, 1623, 2654
BfaI	CTAG	6 cut(s)	1332, 1638, 2250, 2261, 2375, 2433
BfmI	CTRYAG	3 cut(s)	155, 1206, 1659
BfoI	RGCGCY	2 cut(s)	8, 589
BfrI	CTTAAG	1 cut(s)	2069
BfuI	GTATCC	2 cut(s)	1371, 1791
BglI	GCCNNNNNGGC	1 cut(s)	682
BlpI	GCTNAGC	2 cut(s)	869, 2195
BmcAI	AGTACT	3 cut(s)	765, 1423, 2254
Bme1390I	CCNGG	4 cut(s)	377, 1279, 1365, 1785
Bme18I	GGWCC	4 cut(s)	1046, 1163, 1868, 2314
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	4 cut(s)	1046, 1163, 1868, 2314
BmiI	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1870, 2223
BmrFI	CCNGG	4 cut(s)	377, 1279, 1365, 1785
BmrI	ACTGGG	2 cut(s)	405, 2046
BmsI	GCATC	2 cut(s)	1011, 1422
BmuI	ACTGGG	2 cut(s)	405, 2046
BpiI	GAAGAC	3 cut(s)	1892, 2590, 2668
BplI	GAGNNNNNCTC	3 cut(s)	34, 2310, 2342
BpmI	CTGGAG	2 cut(s)	864, 913
Bpu10I	CCTNAGC	1 cut(s)	240
Bpu1102I	GCTNAGC	2 cut(s)	869, 2195
BpuEI	CTTGAG	4 cut(s)	231, 507, 1373, 1680
BpuMI	CCSGG	2 cut(s)	377, 1279
BsaAI	YACGTR	1 cut(s)	911
BsaHI	GRCGYC	2 cut(s)	5, 1634
BsaI	GGTCTC	1 cut(s)	2654
BsaJI	CCNNGG	1 cut(s)	2343
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1774, 1931, 2255, 2472, 2608
Bse1I	ACTGG	7 cut(s)	400, 554, 620, 930, 1343, 2041, 2260
BseBI	CCWGG	2 cut(s)	1365, 1785
BseDI	CCNNGG	1 cut(s)	2343
BseLI	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1774, 1931, 2255, 2472, 2608
BseMII	CTCAG	9 cut(s)	50, 145, 254, 804, 860, 1141, 1794, 1982, 2559
BseNI	ACTGG	7 cut(s)	400, 554, 620, 930, 1343, 2041, 2260
BseRI	GAGGAG	2 cut(s)	358, 1860
BseSI	GKGCMC	1 cut(s)	1645
BseXI	GCAGC	6 cut(s)	127, 595, 960, 1574, 2553, 2602
BseYI	CCCAGC	2 cut(s)	878, 2162
BsgI	GTGCAG	4 cut(s)	312, 602, 933, 1899
Bsh1236I	CGCG	1 cut(s)	1751
BshFI	GGCC	1 cut(s)	926
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	1645
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	5 cut(s)	8, 326, 340, 377, 1278
BslFI	GGGAC	4 cut(s)	216, 1645, 1854, 2563
BslI	CCNNNNNNNGG	8 cut(s)	136, 194, 942, 1774, 1931, 2255, 2472, 2608
BsmAI	GTCTC	4 cut(s)	1377, 1444, 1623, 2654
BsmBI	CGTCTC	1 cut(s)	1623
BsmFI	GGGAC	4 cut(s)	216, 1645, 1854, 2563
BsmI	GAATGC	1 cut(s)	1856
BsnI	GGCC	1 cut(s)	926
Bso31I	GGTCTC	1 cut(s)	2654
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	2 cut(s)	259, 1645
Bsp1407I	TGTACA	1 cut(s)	1212
Bsp1720I	GCTNAGC	2 cut(s)	869, 2195
Bsp19I	CCATGG	1 cut(s)	2343
BspACI	CCGC	9 cut(s)	88, 455, 465, 873, 901, 1937, 2303, 2623, 2697
BspANI	GGCC	1 cut(s)	926
BspCNI	CTCAG	9 cut(s)	49, 144, 253, 803, 861, 1140, 1795, 1981, 2558
BspFNI	CGCG	1 cut(s)	1751
BspHI	TCATGA	3 cut(s)	538, 1134, 2479
BspLI	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1870, 2223
BspMAI	CTGCAG	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	1085
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	2069
BspTNI	GGTCTC	1 cut(s)	2654
BsrBI	CCGCTC	2 cut(s)	90, 873
BsrGI	TGTACA	1 cut(s)	1212
BsrI	ACTGG	7 cut(s)	400, 554, 620, 930, 1343, 2041, 2260
BssECI	CCNNGG	1 cut(s)	2343
BssNAI	GTATAC	1 cut(s)	2536
BssNI	GRCGYC	2 cut(s)	5, 1634
BssSI	CACGAG	1 cut(s)	1842
BssT1I	CCWWGG	1 cut(s)	2343
Bst1107I	GTATAC	1 cut(s)	2536
Bst2BI	CACGAG	1 cut(s)	1842
Bst2UI	CCWGG	2 cut(s)	1365, 1785
Bst4CI	ACNGT	7 cut(s)	290, 945, 1201, 1426, 1663, 2635, 2706
Bst6I	CTCTTC	8 cut(s)	315, 1058, 1085, 1783, 2103, 2114, 2180, 2343
BstACI	GRCGYC	2 cut(s)	5, 1634
BstAFI	CTTAAG	1 cut(s)	2069
BstAUI	TGTACA	1 cut(s)	1212
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	2 cut(s)	25, 1862
BstDSI	CCRYGG	1 cut(s)	2343
BstENI	CCTNNNNNAGG	1 cut(s)	1772
BstFNI	CGCG	1 cut(s)	1751
BstH2I	RGCGCY	2 cut(s)	8, 589
BstHHI	GCGC	4 cut(s)	7, 493, 588, 687
BstMAI	GTCTC	4 cut(s)	1377, 1444, 1623, 2654
BstMWI	GCNNNNNNNGC	4 cut(s)	682, 932, 2612, 2696
BstNI	CCWGG	2 cut(s)	1365, 1785
BstNSI	RCATGY	3 cut(s)	535, 1219, 1864
BstSCI	CCNGG	4 cut(s)	375, 1277, 1363, 1783
BstSFI	CTRYAG	3 cut(s)	155, 1206, 1659
BstSLI	GKGCMC	1 cut(s)	1645
BstUI	CGCG	1 cut(s)	1751
BstV1I	GCAGC	6 cut(s)	127, 595, 960, 1574, 2553, 2602
BstV2I	GAAGAC	3 cut(s)	1892, 2590, 2668
BstX2I	RGATCY	5 cut(s)	197, 1318, 1655, 2221, 2263
BstYI	RGATCY	5 cut(s)	197, 1318, 1655, 2221, 2263
BstZ17I	GTATAC	1 cut(s)	2536
BsuI	GTATCC	2 cut(s)	1371, 1791
BsuRI	GGCC	1 cut(s)	926
BtgI	CCRYGG	1 cut(s)	2343
BtgZI	GCGATG	1 cut(s)	1450
BtsI	GCAGTG	4 cut(s)	589, 921, 1821, 2408
BtsIMutI	CAGTG	7 cut(s)	589, 921, 937, 1821, 2408, 2640, 2652
Cac8I	GCNNGC	2 cut(s)	25, 1862
CaiI	CAGNNNCTG	1 cut(s)	1205
CciI	TCATGA	3 cut(s)	538, 1134, 2479
CfoI	GCGC	4 cut(s)	7, 493, 588, 687
Cfr13I	GGNCC	4 cut(s)	1046, 1163, 1868, 2314
CseI	GACGC	1 cut(s)	1642
Csp6I	GTAC	7 cut(s)	764, 823, 1108, 1213, 1422, 1740, 2253
CviQI	GTAC	7 cut(s)	764, 823, 1108, 1213, 1422, 1740, 2253
DinI	GGCGCC	1 cut(s)	6
Eam1104I	CTCTTC	8 cut(s)	315, 1058, 1085, 1783, 2103, 2114, 2180, 2343
EarI	CTCTTC	8 cut(s)	315, 1058, 1085, 1783, 2103, 2114, 2180, 2343
Eco130I	CCWWGG	1 cut(s)	2343
Eco24I	GRGCYC	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	2654
Eco47I	GGWCC	4 cut(s)	1046, 1163, 1868, 2314
Eco57I	CTGAAG	3 cut(s)	186, 1434, 2447
Eco72I	CACGTG	1 cut(s)	911
Eco88I	CYCGRG	1 cut(s)	279
EcoNI	CCTNNNNNAGG	1 cut(s)	1772
EcoRI	GAATTC	3 cut(s)	445, 739, 1403
EcoRII	CCWGG	2 cut(s)	1363, 1783
EcoT14I	CCWWGG	1 cut(s)	2343
EcoT22I	ATGCAT	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	2343
Esp3I	CGTCTC	1 cut(s)	1623
FaqI	GGGAC	4 cut(s)	216, 1645, 1854, 2563
FauI	CCCGC	2 cut(s)	462, 866
FauNDI	CATATG	1 cut(s)	1942
FblI	GTMKAC	1 cut(s)	2535
FriOI	GRGCYC	1 cut(s)	259
FspBI	CTAG	6 cut(s)	1332, 1638, 2250, 2261, 2375, 2433
GlaI	GCGC	4 cut(s)	6, 492, 587, 686
GsaI	CCCAGC	2 cut(s)	882, 2166
GsuI	CTGGAG	2 cut(s)	864, 913
HaeII	RGCGCY	2 cut(s)	8, 589
HaeIII	GGCC	1 cut(s)	926
HapII	CCGG	5 cut(s)	8, 326, 340, 377, 1278
HgaI	GACGC	1 cut(s)	1642
HhaI	GCGC	4 cut(s)	7, 493, 588, 687
Hin1I	GRCGYC	2 cut(s)	5, 1634
Hin6I	GCGC	4 cut(s)	5, 491, 586, 685
HinP1I	GCGC	4 cut(s)	5, 491, 586, 685
HindIII	AAGCTT	1 cut(s)	832
HpaII	CCGG	5 cut(s)	8, 326, 340, 377, 1278
HphI	GGTGA	6 cut(s)	482, 510, 588, 1169, 1399, 2508
Hpy166II	GTNNAC	9 cut(s)	169, 706, 1049, 1108, 1213, 1643, 2006, 2236, 2536
Hpy8I	GTNNAC	9 cut(s)	169, 706, 1049, 1108, 1213, 1643, 2006, 2236, 2536
HpyAV	CCTTC	5 cut(s)	662, 1702, 2184, 2221, 2422
HpyCH4III	ACNGT	7 cut(s)	290, 945, 1201, 1426, 1663, 2635, 2706
HpyCH4IV	ACGT	1 cut(s)	910
HpyF10VI	GCNNNNNNNGC	4 cut(s)	682, 932, 2612, 2696
HpySE526I	ACGT	1 cut(s)	910
Hsp92I	GRCGYC	2 cut(s)	5, 1634
HspAI	GCGC	4 cut(s)	5, 491, 586, 685
KasI	GGCGCC	1 cut(s)	4
LguI	GCTCTTC	1 cut(s)	1085
LmnI	GCTCC	4 cut(s)	10, 95, 262, 770
Lsp1109I	GCAGC	6 cut(s)	127, 595, 960, 1574, 2553, 2602
LweI	GCATC	2 cut(s)	1011, 1422
MaeI	CTAG	6 cut(s)	1332, 1638, 2250, 2261, 2375, 2433
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	9 cut(s)	270, 302, 379, 565, 725, 1256, 1690, 1745, 2581
MbiI	CCGCTC	2 cut(s)	90, 873
MflI	RGATCY	5 cut(s)	197, 1318, 1655, 2221, 2263
MhlI	GDGCHC	2 cut(s)	259, 1645
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	28, 341, 1960, 2120, 2535
MmeI	TCCRAC	1 cut(s)	810
Mph1103I	ATGCAT	1 cut(s)	1149
MroXI	GAANNNNTTC	3 cut(s)	803, 1299, 2132
MseI	TTAA	6 cut(s)	65, 110, 756, 2070, 2093, 2330
MslI	CAYNNNNRTG	2 cut(s)	543, 1493
MspA1I	CMGCKG	1 cut(s)	467
MspCI	CTTAAG	1 cut(s)	2069
MspI	CCGG	5 cut(s)	8, 326, 340, 377, 1278
MspR9I	CCNGG	4 cut(s)	377, 1279, 1365, 1785
Mva1269I	GAATGC	1 cut(s)	1856
MvaI	CCWGG	2 cut(s)	1365, 1785
MvnI	CGCG	1 cut(s)	1751
MwoI	GCNNNNNNNGC	4 cut(s)	682, 932, 2612, 2696
NarI	GGCGCC	1 cut(s)	5
NciI	CCSGG	2 cut(s)	377, 1279
NcoI	CCATGG	1 cut(s)	2343
NdeI	CATATG	1 cut(s)	1942
NlaIV	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1870, 2223
NmuCI	GTSAC	3 cut(s)	565, 1745, 2581
NsiI	ATGCAT	1 cut(s)	1149
NspI	RCATGY	3 cut(s)	535, 1219, 1864
PaeI	GCATGC	1 cut(s)	1864
PaeR7I	CTCGAG	1 cut(s)	279
PagI	TCATGA	3 cut(s)	538, 1134, 2479
PciI	ACATGT	1 cut(s)	531
PciSI	GCTCTTC	1 cut(s)	1085
PcsI	WCGNNNNNNNCGW	1 cut(s)	286
PctI	GAATGC	1 cut(s)	1856
PdmI	GAANNNNTTC	3 cut(s)	803, 1299, 2132
PfeI	GAWTC	6 cut(s)	512, 887, 919, 1131, 2074, 2128
PflFI	GACNNNGTC	1 cut(s)	37
PflMI	CCANNNNNTGG	2 cut(s)	1931, 2608
PfoI	TCCNGGA	1 cut(s)	1783
PleI	GAGTC	5 cut(s)	28, 340, 1960, 2119, 2535
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	5 cut(s)	28, 340, 1960, 2119, 2535
Ppu21I	YACGTR	1 cut(s)	911
PscI	ACATGT	1 cut(s)	531
PshBI	ATTAAT	1 cut(s)	756
Psp6I	CCWGG	2 cut(s)	1363, 1783
PspCI	CACGTG	1 cut(s)	911
PspFI	CCCAGC	2 cut(s)	878, 2162
PspGI	CCWGG	2 cut(s)	1363, 1783
PspN4I	GGNNCC	6 cut(s)	6, 258, 772, 1165, 1870, 2223
PspPI	GGNCC	4 cut(s)	1046, 1163, 1868, 2314
PstI	CTGCAG	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	1205
PsuI	RGATCY	5 cut(s)	197, 1318, 1655, 2221, 2263
PsyI	GACNNNGTC	1 cut(s)	37
RsaI	GTAC	7 cut(s)	765, 824, 1109, 1214, 1423, 1741, 2254
RsaNI	GTAC	7 cut(s)	764, 823, 1108, 1213, 1422, 1740, 2253
RseI	CAYNNNNRTG	2 cut(s)	543, 1493
SapI	GCTCTTC	1 cut(s)	1085
SaqAI	TTAA	6 cut(s)	65, 110, 756, 2070, 2093, 2330
Sau96I	GGNCC	4 cut(s)	1046, 1163, 1868, 2314
ScaI	AGTACT	3 cut(s)	765, 1423, 2254
SchI	GAGTC	5 cut(s)	28, 341, 1960, 2120, 2535
ScrFI	CCNGG	4 cut(s)	377, 1279, 1365, 1785
SduI	GDGCHC	2 cut(s)	259, 1645
SfaNI	GCATC	2 cut(s)	1011, 1422
SfcI	CTRYAG	3 cut(s)	155, 1206, 1659
SfoI	GGCGCC	1 cut(s)	6
Sfr274I	CTCGAG	1 cut(s)	279
SinI	GGWCC	4 cut(s)	1046, 1163, 1868, 2314
SlaI	CTCGAG	1 cut(s)	279
SmiMI	CAYNNNNRTG	2 cut(s)	543, 1493
SmlI	CTYRAG	6 cut(s)	246, 279, 522, 1352, 1695, 2069
SmoI	CTYRAG	6 cut(s)	246, 279, 522, 1352, 1695, 2069
SphI	GCATGC	1 cut(s)	1864
SsiI	CCGC	9 cut(s)	88, 455, 465, 873, 901, 1937, 2303, 2623, 2697
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	651
SspMI	CTAG	6 cut(s)	1332, 1638, 2250, 2261, 2375, 2433
StyD4I	CCNGG	4 cut(s)	375, 1277, 1363, 1783
StyI	CCWWGG	1 cut(s)	2343
TaaI	ACNGT	7 cut(s)	290, 945, 1201, 1426, 1663, 2635, 2706
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	3 cut(s)	280, 625, 2371
TaqII	GACCGA	1 cut(s)	2331
TatI	WGTACW	5 cut(s)	763, 1212, 1421, 1739, 2252
TauI	GCSGC	4 cut(s)	904, 1940, 2306, 2626
TfiI	GAWTC	6 cut(s)	512, 887, 919, 1131, 2074, 2128
Tru1I	TTAA	6 cut(s)	65, 110, 756, 2070, 2093, 2330
Tru9I	TTAA	6 cut(s)	65, 110, 756, 2070, 2093, 2330
TscAI	CASTG	7 cut(s)	596, 921, 937, 1821, 2408, 2640, 2659
TseFI	GTSAC	3 cut(s)	565, 1745, 2581
TseI	GCWGC	6 cut(s)	140, 583, 973, 1587, 2566, 2615
Tsp45I	GTSAC	3 cut(s)	565, 1745, 2581
TspRI	CASTG	7 cut(s)	596, 921, 937, 1821, 2408, 2640, 2659
Tth111I	GACNNNGTC	1 cut(s)	37
Van91I	CCANNNNNTGG	2 cut(s)	1931, 2608
Vha464I	CTTAAG	1 cut(s)	2069
VneI	GTGCAC	1 cut(s)	1641
VpaK11BI	GGWCC	4 cut(s)	1046, 1163, 1868, 2314
VspI	ATTAAT	1 cut(s)	756
XagI	CCTNNNNNAGG	1 cut(s)	1772
XapI	RAATTY	6 cut(s)	445, 601, 739, 1403, 1444, 2379
XceI	RCATGY	3 cut(s)	535, 1219, 1864
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2341
XhoI	CTCGAG	1 cut(s)	279
XmiI	GTMKAC	1 cut(s)	2535
XmnI	GAANNNNTTC	3 cut(s)	803, 1299, 2132
XspI	CTAG	6 cut(s)	1332, 1638, 2250, 2261, 2375, 2433
ZrmI	AGTACT	3 cut(s)	765, 1423, 2254
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.