RchiOBHm_Chr1g0354421

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004250
Physical Location & Seq
Reverse (-)
47397525 .. 47402234
4710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57997

Sequence Viewer

Length: 378 bp
ATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGGGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGAGTCCCGGGTTTAAAGATGAAGTTCTTATCAACTTCATTCATGGTCTTTTGGATGTAAAGGTGCTTACTCTTGAGGAGCCTGAACGTGGTCTTACCATCGTCAAGCTAACGCATGTGGATGTTCCTGAAGAAGACAGAGGCAGTCCATCACATCCAACAGCAAATGAAGCTTCCACTAACACAAAAGAGACTTCCAAGCAGATGAACCAATGGATGACACTGATGAAGAACTCATGTAATGATTGGTTCGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

125

Amino Acids

14.26

Weight (kDa)

5.28

Isoelectric Point (pI)

32.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 267
AfaI GTAC 1 cut(s) 100
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 1 cut(s) 49
AluBI AGCT 2 cut(s) 226, 290
AluI AGCT 2 cut(s) 226, 290
Alw26I GTCTC 1 cut(s) 302
Ama87I CYCGRG 1 cut(s) 125
AsuC2I CCSGG 2 cut(s) 126, 127
AsuHPI GGTGA 1 cut(s) 13
AsuII TTCGAA 1 cut(s) 369
AvaI CYCGRG 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 258
BccI CCATC 2 cut(s) 224, 274
BcnI CCSGG 2 cut(s) 126, 127
BcoDI GTCTC 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 57
Bme1390I CCNGG 2 cut(s) 126, 127
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 126, 127
BmsI GCATC 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 2 cut(s) 126, 127
BsaJI CCNNGG 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 5 cut(s) 91, 178, 244, 271, 339
BseLI CCNNNNNNNGG 1 cut(s) 206
BseMII CTCAG 1 cut(s) 108
BseRI GAGGAG 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 1 cut(s) 126
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 302
BsmFI GGGAC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 125
Bsp119I TTCGAA 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 125
Bst4CI ACNGT 1 cut(s) 8
BstBI TTCGAA 1 cut(s) 369
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 5 cut(s) 91, 178, 244, 271, 339
BstMAI GTCTC 1 cut(s) 302
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 2 cut(s) 124, 125
BstSFI CTRYAG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 258
BtsCI GGATG 5 cut(s) 91, 178, 244, 271, 339
BtsIMutI CAGTG 1 cut(s) 338
Cfr9I CCCGGG 1 cut(s) 125
Csp6I GTAC 1 cut(s) 99
CviAII CATG 5 cut(s) 64, 96, 161, 233, 354
CviJI RGCY 4 cut(s) 32, 199, 226, 290
CviKI_1 RGCY 4 cut(s) 32, 199, 226, 290
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 117
DraI TTTAAA 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 125
FaeI CATG 5 cut(s) 67, 99, 164, 236, 357
FaiI YATR 7 cut(s) 27, 65, 80, 97, 162, 234, 355
FaqI GGGAC 1 cut(s) 108
FatI CATG 5 cut(s) 63, 95, 160, 232, 353
FblI GTMKAC 1 cut(s) 60
FokI GGATG 5 cut(s) 78, 185, 251, 258, 346
HapII CCGG 1 cut(s) 126
Hin1II CATG 5 cut(s) 67, 99, 164, 236, 357
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 2 cut(s) 36, 121
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 13
Hpy166II GTNNAC 1 cut(s) 61
Hpy188III TCNNGA 2 cut(s) 191, 245
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 205
HpyCH4V TGCA 2 cut(s) 4, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 205
Hsp92II CATG 5 cut(s) 67, 99, 164, 236, 357
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 4 cut(s) 46, 139, 213, 258
LweI GCATC 1 cut(s) 100
MaeII ACGT 1 cut(s) 205
MaeIII GTNAC 2 cut(s) 19, 112
MboII GAAGA 3 cut(s) 260, 263, 358
MluCI AATT 1 cut(s) 52
MlyI GAGTC 1 cut(s) 130
MmeI TCCRAC 1 cut(s) 299
MnlI CCTC 4 cut(s) 50, 60, 187, 251
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 126, 127
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 2 cut(s) 126, 127
NlaIII CATG 5 cut(s) 67, 99, 164, 236, 357
NlaIV GGNNCC 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 19
NspI RCATGY 1 cut(s) 236
NspV TTCGAA 1 cut(s) 369
PfeI GAWTC 1 cut(s) 36
PleI GAGTC 1 cut(s) 129
PpsI GAGTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 198
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 237
SaqAI TTAA 1 cut(s) 132
SchI GAGTC 1 cut(s) 130
ScrFI CCNGG 2 cut(s) 126, 127
SetI ASST 5 cut(s) 26, 183, 208, 228, 292
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 369
SmaI CCCGGG 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 1 cut(s) 52
StyD4I CCNGG 2 cut(s) 124, 125
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 208
TaqI TCGA 1 cut(s) 369
TasI AATT 1 cut(s) 52
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 7 cut(s) 42, 145, 149, 153, 300, 338, 359
TspMI CCCGGG 1 cut(s) 125
TspRI CASTG 1 cut(s) 345
XceI RCATGY 1 cut(s) 236
XmaI CCCGGG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.