Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

49893019 .. 49893649

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029825

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTGCCTCGGTGCCGCCGACTCCTTCGACCCTTCCCCTTCCTTCGAGTCCACCTCCGCCTTCCTCCCCTGCTTTTTCCATCTCCAAGTCCTCCGTCAACTCCCAACTCGCCCAATGCTGACTCATCAATCCCACTCACCTCAAACCCTTCCTCGACCAAGTCACCTCCTCCATCTCCGACCTCGAGAAGCTCGTCGCTCTGAGAACTCTTACTTCTTCCCCTCGTACAAAGTCCAATCATCGCTGAAAATGATCTCCGATCTGAGGGGCTCTCGATCCAATCGGAGGCTTGCCTCGAACATGTCGCCGTCTCTACCGCCCCCTACAGCTGTTGCAGCCAATTCTTTCAAGAAATCCACCGCGACCAAGACATCAAGATCCTCATCACCTCCACCGAGCCTGGAGAAGATGATGGCGACAATAACGACACATCGTGCGACCAATTCATCCCCCTCCGCCACCTCATACCCCACCATTCGGCCACGAAAACCTCCTCGGAGAGGACGTGCCCTTAGTCCTCGAGAATCACAACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

179

Amino Acids

19.8

Weight (kDa)

11.58

Isoelectric Point (pI)

90.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AccII	CGCG	1 cut(s)	362
AciI	CCGC	5 cut(s)	15, 57, 317, 360, 456
AclWI	GGATC	2 cut(s)	270, 372
AcoI	YGGCCR	1 cut(s)	479
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	1 cut(s)	227
AfiI	CCNNNNNNNGG	4 cut(s)	264, 285, 477, 500
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	349
AjiI	CACGTC	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	2 cut(s)	191, 329
AluI	AGCT	2 cut(s)	191, 329
Alw26I	GTCTC	1 cut(s)	315
AlwI	GGATC	2 cut(s)	270, 372
Ama87I	CYCGRG	2 cut(s)	183, 519
AoxI	GGCC	1 cut(s)	479
ApeKI	GCWGC	1 cut(s)	335
AsuHPI	GGTGA	3 cut(s)	129, 155, 378
AvaI	CYCGRG	2 cut(s)	183, 519
BaeGI	GKGCMC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	347
BccI	CCATC	3 cut(s)	87, 180, 406
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	324
BisI	GCNGC	2 cut(s)	15, 336
BlsI	GCNGC	2 cut(s)	16, 337
Bme1390I	CCNGG	1 cut(s)	401
BmeT110I	CYCGRG	2 cut(s)	183, 519
BmgBI	CACGTC	1 cut(s)	506
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	401
BplI	GAGNNNNNCTC	4 cut(s)	38, 70, 256, 288
BpmI	CTGGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	382
BsaJI	CCNNGG	2 cut(s)	7, 494
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	4 cut(s)	264, 285, 477, 500
Bse8I	GATNNNNATC	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	2 cut(s)	7, 494
BseGI	GGATG	1 cut(s)	446
BseJI	GATNNNNATC	1 cut(s)	382
BseLI	CCNNNNNNNGG	4 cut(s)	264, 285, 477, 500
BseMII	CTCAG	2 cut(s)	192, 254
BseRI	GAGGAG	2 cut(s)	158, 483
BseSI	GKGCMC	1 cut(s)	511
BseXI	GCAGC	1 cut(s)	347
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	481
BshNI	GGYRCC	1 cut(s)	11
BsiHKCI	CYCGRG	2 cut(s)	183, 519
BslI	CCNNNNNNNGG	4 cut(s)	264, 285, 477, 500
BsmAI	GTCTC	1 cut(s)	315
BsmBI	CGTCTC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	481
BsoBI	CYCGRG	2 cut(s)	183, 519
Bsp1286I	GDGCHC	2 cut(s)	272, 511
Bsp143I	GATC	4 cut(s)	252, 259, 275, 377
BspACI	CCGC	5 cut(s)	15, 57, 317, 360, 456
BspANI	GGCC	1 cut(s)	481
BspCNI	CTCAG	2 cut(s)	193, 255
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	1 cut(s)	13
BspPI	GGATC	2 cut(s)	270, 372
BspT107I	GGYRCC	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	7, 494
BssMI	GATC	4 cut(s)	252, 259, 275, 377
Bst2UI	CCWGG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	3 cut(s)	201, 263, 512
BstENI	CCTNNNNNAGG	1 cut(s)	498
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	362
BstKTI	GATC	4 cut(s)	255, 262, 278, 380
BstMAI	GTCTC	1 cut(s)	315
BstMBI	GATC	4 cut(s)	252, 259, 275, 377
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	511
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	347
BstX2I	RGATCY	1 cut(s)	377
BstYI	RGATCY	1 cut(s)	377
BsuRI	GGCC	1 cut(s)	481
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	1 cut(s)	506
BtsCI	GGATG	1 cut(s)	446
Cac8I	GCNNGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	7 cut(s)	191, 270, 289, 329, 338, 399, 481
CviKI_1	RGCY	7 cut(s)	191, 270, 289, 329, 338, 399, 481
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	3 cut(s)	201, 263, 512
DpnI	GATC	4 cut(s)	254, 261, 277, 379
DpnII	GATC	4 cut(s)	252, 259, 275, 377
DraIII	CACNNNGTG	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	479
EciI	GGCGGA	2 cut(s)	46, 445
Eco24I	GRGCYC	1 cut(s)	272
Eco88I	CYCGRG	2 cut(s)	183, 519
EcoNI	CCTNNNNNAGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	1 cut(s)	304
FaiI	YATR	2 cut(s)	302, 466
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	2 cut(s)	15, 336
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	15, 336
GluI	GCNGC	2 cut(s)	15, 336
GsuI	CTGGAG	1 cut(s)	422
HaeIII	GGCC	1 cut(s)	481
Hin1II	CATG	1 cut(s)	304
HincII	GTYRAC	1 cut(s)	98
HindII	GTYRAC	1 cut(s)	98
HinfI	GANTC	4 cut(s)	20, 47, 121, 524
HphI	GGTGA	3 cut(s)	129, 155, 378
Hpy166II	GTNNAC	2 cut(s)	51, 98
Hpy188I	TCNGA	6 cut(s)	179, 202, 259, 264, 285, 498
Hpy188III	TCNNGA	5 cut(s)	185, 273, 349, 375, 521
Hpy8I	GTNNAC	2 cut(s)	51, 98
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	6 cut(s)	34, 42, 48, 52, 70, 158
HpyCH4IV	ACGT	1 cut(s)	505
HpyCH4V	TGCA	1 cut(s)	335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	201, 263, 512
HpySE526I	ACGT	1 cut(s)	505
Hsp92II	CATG	1 cut(s)	304
Kzo9I	GATC	4 cut(s)	252, 259, 275, 377
LpnPI	CCDG	3 cut(s)	82, 386, 413
Lsp1109I	GCAGC	1 cut(s)	347
MaeII	ACGT	1 cut(s)	505
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	4 cut(s)	254, 261, 277, 379
MboI	GATC	4 cut(s)	252, 259, 275, 377
MboII	GAAGA	2 cut(s)	208, 418
MflI	RGATCY	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	272, 511
MluCI	AATT	2 cut(s)	340, 442
MlyI	GAGTC	3 cut(s)	14, 56, 115
MmeI	TCCRAC	1 cut(s)	202
MslI	CAYNNNNRTG	1 cut(s)	532
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	335
NdeII	GATC	4 cut(s)	252, 259, 275, 377
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	304
PaeR7I	CTCGAG	2 cut(s)	183, 519
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	3 cut(s)	15, 190, 502
PfeI	GAWTC	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	159
PkrI	GCNGC	2 cut(s)	16, 337
PleI	GAGTC	3 cut(s)	14, 55, 115
PpsI	GAGTC	3 cut(s)	14, 55, 115
PscI	ACATGT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	399
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	532
SatI	GCNGC	2 cut(s)	15, 336
Sau3AI	GATC	4 cut(s)	252, 259, 275, 377
SchI	GAGTC	3 cut(s)	14, 56, 115
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	272, 511
SfcI	CTRYAG	1 cut(s)	324
Sfr274I	CTCGAG	2 cut(s)	183, 519
SlaI	CTCGAG	2 cut(s)	183, 519
SmiMI	CAYNNNNRTG	1 cut(s)	532
SmlI	CTYRAG	2 cut(s)	183, 519
SmoI	CTYRAG	2 cut(s)	183, 519
Sse9I	AATT	2 cut(s)	340, 442
SsiI	CCGC	5 cut(s)	15, 57, 317, 360, 456
StyD4I	CCNGG	1 cut(s)	399
TaiI	ACGT	1 cut(s)	508
TaqI	TCGA	7 cut(s)	27, 45, 154, 184, 274, 296, 520
TasI	AATT	2 cut(s)	340, 442
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	524
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	1 cut(s)	335
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	435
TspGWI	ACGGA	1 cut(s)	83
Tth111I	GACNNNGTC	1 cut(s)	159
XagI	CCTNNNNNAGG	1 cut(s)	498
XceI	RCATGY	1 cut(s)	304
XhoI	CTCGAG	2 cut(s)	183, 519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.