Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

46607782 .. 46609488

Gene Structure 1707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG252300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGGTTTGAGAAAGCTAATTAACCATCAAAAGTGCAGGCAGTCATATATCTTTCTTGCATCTTTGGTTCTCGGATTTGCCTGTGTAATTCATCAAGTGCAAGAGGCCTCCAAGTACAAGGCCCTTCACTGTCATCAAAAACAGGAAGTGTTAAGAAGCTTCACATCTCAGGCATTGAAAACTTCCAGAATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGCGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCTTCCCGGGTTTAAAGATGAAGTTCATATCAACTTCATTCATGGTCTTTTGGATGTAAAGGTGCTTACTCTTGAGGAGCCTGAACGTGGTCTTACCATTGTCAAGCTAACGCATGTGGATGTTCCTGAAGAAGACAGTTTATTTCTCAGCTTTTGTTTTGTAGTTTTTGGTATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

PWI

Protein Analysis

162

Amino Acids

18.57

Weight (kDa)

8.18

Isoelectric Point (pI)

43.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	249
AcuI	CTGAAG	1 cut(s)	456
AfaI	GTAC	2 cut(s)	116, 289
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	2 cut(s)	178, 238
AluBI	AGCT	5 cut(s)	16, 159, 310, 415, 459
AluI	AGCT	5 cut(s)	16, 159, 310, 415, 459
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	105, 120
AspS9I	GGNCC	1 cut(s)	121
AsuC2I	CCSGG	2 cut(s)	315, 316
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	294, 326
BbsI	GAAGAC	1 cut(s)	447
BccI	CCATC	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	315, 316
BfmI	CTRYAG	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	315, 316
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	2 cut(s)	315, 316
BmsI	GCATC	2 cut(s)	68, 289
BpiI	GAAGAC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	401
BpuMI	CCSGG	2 cut(s)	315, 316
BsaJI	CCNNGG	1 cut(s)	314
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	3 cut(s)	280, 367, 433
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMII	CTCAG	3 cut(s)	182, 297, 469
BseRI	GAGGAG	1 cut(s)	398
BsgI	GTGCAG	1 cut(s)	55
BshFI	GGCC	2 cut(s)	107, 122
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	2 cut(s)	107, 122
BsoBI	CYCGRG	1 cut(s)	314
BspANI	GGCC	2 cut(s)	107, 122
BspCNI	CTCAG	3 cut(s)	181, 298, 468
BspLI	GGNNCC	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	314
Bst4CI	ACNGT	3 cut(s)	131, 197, 446
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	3 cut(s)	168, 306, 455
BstF5I	GGATG	3 cut(s)	280, 367, 433
BstNSI	RCATGY	1 cut(s)	425
BstSCI	CCNGG	2 cut(s)	313, 314
BstSFI	CTRYAG	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	107, 122
BtsCI	GGATG	3 cut(s)	280, 367, 433
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	121
Cfr9I	CCCGGG	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	115, 288
CviAII	CATG	4 cut(s)	253, 285, 350, 422
CviJI	RGCY	9 cut(s)	16, 107, 122, 159, 221, 310, 388, 415, 459
CviKI_1	RGCY	9 cut(s)	16, 107, 122, 159, 221, 310, 388, 415, 459
CviQI	GTAC	2 cut(s)	115, 288
DdeI	CTNAG	3 cut(s)	168, 306, 455
DraI	TTTAAA	1 cut(s)	322
Eco147I	AGGCCT	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	456
Eco88I	CYCGRG	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	121
FaeI	CATG	4 cut(s)	256, 288, 353, 425
FaiI	YATR	9 cut(s)	46, 48, 216, 254, 269, 286, 336, 351, 423
FatI	CATG	4 cut(s)	252, 284, 349, 421
FblI	GTMKAC	1 cut(s)	249
FokI	GGATG	3 cut(s)	267, 374, 440
HaeIII	GGCC	2 cut(s)	107, 122
HapII	CCGG	1 cut(s)	315
Hin1II	CATG	4 cut(s)	256, 288, 353, 425
HindIII	AAGCTT	1 cut(s)	157
HinfI	GANTC	1 cut(s)	225
HpaII	CCGG	1 cut(s)	315
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	74
Hpy188III	TCNNGA	3 cut(s)	186, 380, 434
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	134, 253
HpyCH4III	ACNGT	3 cut(s)	131, 197, 446
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	5 cut(s)	36, 59, 100, 193, 280
HpyF3I	CTNAG	3 cut(s)	168, 306, 455
HpySE526I	ACGT	1 cut(s)	394
Hsp92II	CATG	4 cut(s)	256, 288, 353, 425
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	9 cut(s)	22, 94, 128, 155, 199, 235, 328, 402, 447
LweI	GCATC	2 cut(s)	68, 289
MaeII	ACGT	1 cut(s)	394
MaeIII	GTNAC	2 cut(s)	208, 301
MboII	GAAGA	2 cut(s)	449, 452
MluCI	AATT	3 cut(s)	18, 87, 241
MnlI	CCTC	5 cut(s)	97, 118, 239, 249, 376
MseI	TTAA	4 cut(s)	21, 152, 321, 487
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	2 cut(s)	315, 316
Mva1269I	GAATGC	1 cut(s)	195
NciI	CCSGG	2 cut(s)	315, 316
NlaIII	CATG	4 cut(s)	256, 288, 353, 425
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	225
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	1 cut(s)	121
RsaI	GTAC	2 cut(s)	116, 289
RsaNI	GTAC	2 cut(s)	115, 288
RseI	CAYNNNNRTG	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	21, 152, 321, 487
Sau96I	GGNCC	1 cut(s)	121
ScrFI	CCNGG	2 cut(s)	315, 316
SetI	ASST	8 cut(s)	18, 161, 215, 312, 372, 397, 417, 461
SfaNI	GCATC	2 cut(s)	68, 289
SfcI	CTRYAG	1 cut(s)	246
SmaI	CCCGGG	1 cut(s)	316
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	1 cut(s)	380
SmoI	CTYRAG	1 cut(s)	380
Sse9I	AATT	3 cut(s)	18, 87, 241
SseBI	AGGCCT	1 cut(s)	107
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	2 cut(s)	313, 314
TaaI	ACNGT	3 cut(s)	131, 197, 446
TaiI	ACGT	1 cut(s)	397
TasI	AATT	3 cut(s)	18, 87, 241
TatI	WGTACW	2 cut(s)	114, 287
TfiI	GAWTC	1 cut(s)	225
Tru1I	TTAA	4 cut(s)	21, 152, 321, 487
Tru9I	TTAA	4 cut(s)	21, 152, 321, 487
TscAI	CASTG	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	6 cut(s)	80, 231, 323, 334, 338, 342
TspMI	CCCGGG	1 cut(s)	314
TspRI	CASTG	1 cut(s)	134
XceI	RCATGY	1 cut(s)	425
XmaI	CCCGGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.