Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Forward (+)

6650487 .. 6652130

Gene Structure 1644 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031606

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTGTTGTCTTCTTTGGTGGTCTTGGTGGTGTTGTTAATGGCGGTGGTGGAAGCATTTGCAAGGCAGCTACTGCTCTTACAACTGTTGTCTTCGTCCTCCGTCAACTCCCAACTCGCCCAGTGCCGACTCACCTATCCCACTCACCTCAAACCCTTCCTCGACCAAATCTCCTCCTCCATCTCACACCTCGAGAAGCTCGTCACTGCGAACTCCTACTTCTTCCCCTCGTACAAAGTCCGATCGTCGCTGAAAACGATCTCCGATCTGAGAATTGGGAATTGGAATCAAGAGAGGTGGCAATTTCCCCAACCACTGTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

108

Amino Acids

12.15

Weight (kDa)

9.65

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TBCC_N	PF16752	32 - 91	1.3e-13	Tubulin-specific chaperone C N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	44
AfaI	GTAC	1 cut(s)	233
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
AluBI	AGCT	2 cut(s)	70, 199
AluI	AGCT	2 cut(s)	70, 199
AlwNI	CAGNNNCTG	1 cut(s)	73
Ama87I	CYCGRG	1 cut(s)	191
ApeKI	GCWGC	1 cut(s)	67
AsuHPI	GGTGA	2 cut(s)	124, 137
AvaI	CYCGRG	1 cut(s)	191
BbsI	GAAGAC	2 cut(s)	3, 84
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
BmeT110I	CYCGRG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
BpiI	GAAGAC	2 cut(s)	3, 84
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bse1I	ACTGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	1 cut(s)	121
BseRI	GAGGAG	2 cut(s)	163, 166
BseXI	GCAGC	1 cut(s)	79
Bsh1285I	CGRYCG	1 cut(s)	245
BsiEI	CGRYCG	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	3 cut(s)	242, 258, 265
BspACI	CCGC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	121
BssMI	GATC	3 cut(s)	242, 258, 265
Bst4CI	ACNGT	2 cut(s)	87, 318
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	269
BstKTI	GATC	3 cut(s)	245, 261, 268
BstMBI	GATC	3 cut(s)	242, 258, 265
BstMCI	CGRYCG	1 cut(s)	245
BstMWI	GCNNNNNNNGC	1 cut(s)	73
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	2 cut(s)	3, 84
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	128, 204, 314
CaiI	CAGNNNCTG	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	232
CspCI	CAANNNNNGTGG	2 cut(s)	278, 313
CviJI	RGCY	2 cut(s)	70, 199
CviKI_1	RGCY	2 cut(s)	70, 199
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	1 cut(s)	269
DpnI	GATC	3 cut(s)	244, 260, 267
DpnII	GATC	3 cut(s)	242, 258, 265
Eco88I	CYCGRG	1 cut(s)	191
Fnu4HI	GCNGC	1 cut(s)	68
Fsp4HI	GCNGC	1 cut(s)	68
GluI	GCNGC	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	129, 286
HphI	GGTGA	2 cut(s)	124, 137
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	3 cut(s)	242, 265, 270
Hpy188III	TCNNGA	3 cut(s)	193, 290, 321
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	87, 318
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	269
Kzo9I	GATC	3 cut(s)	242, 258, 265
LpnPI	CCDG	1 cut(s)	134
Lsp1109I	GCAGC	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	3 cut(s)	244, 260, 267
MboI	GATC	3 cut(s)	242, 258, 265
MboII	GAAGA	3 cut(s)	3, 84, 214
MluCI	AATT	3 cut(s)	273, 280, 302
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	8 cut(s)	109, 158, 170, 184, 187, 200, 238, 288
MseI	TTAA	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	73
NdeII	GATC	3 cut(s)	242, 258, 265
NmuCI	GTSAC	1 cut(s)	202
PaeR7I	CTCGAG	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 254
PfeI	GAWTC	1 cut(s)	286
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	245
PleI	GAGTC	1 cut(s)	123
PpsI	GAGTC	1 cut(s)	123
PstNI	CAGNNNCTG	1 cut(s)	73
PvuI	CGATCG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	242, 258, 265
SchI	GAGTC	1 cut(s)	123
SetI	ASST	6 cut(s)	72, 137, 150, 192, 201, 299
Sfr274I	CTCGAG	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	191
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	3 cut(s)	273, 280, 302
SsiI	CCGC	1 cut(s)	44
TaaI	ACNGT	2 cut(s)	87, 318
TaqI	TCGA	2 cut(s)	162, 192
TasI	AATT	3 cut(s)	273, 280, 302
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	3 cut(s)	128, 211, 321
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	202
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	3 cut(s)	128, 211, 321
XhoI	CTCGAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.