Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Forward (+)

21259648 .. 21262998

Gene Structure 3351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00399340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGCGCTTTGGTTCATAGATAAGTGGGAAAAGCTGTCTACAGAACTCAAGAAATTTGTGCAGGCACATGGGAGTGCACCCGGGTTGCTTGACTTGGTTGTGATGCGCACACTCTTCTGTATATGCTTAAACAGTGACCGATCCTCTTCTATTCGGGCAACTTGGAGATCCTTCCTATTTGTCATGGAACAGATGCCCAAGAAGGCACTAAGAGCAAGTTCACCTGTTGGGTCAGCAGACACCTCCCTTACGCGCCTCGCCGCCGCCAACTCCTCCGACCCCTCCCTTTCCTTCGAGTCCACCTCCACCTTCCTCTCCTCGCTTCCCCATCTCCAAGTCCTCCGTCAACTCCCAAGTGGACTCACCGATCCCACTCACCTCAAACACTTCCTCGACCAAATCGTGAGCCCCGGAAAAATATATCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.88

Weight (kDa)

9.56

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	38
AccII	CGCG	1 cut(s)	253
AciI	CCGC	2 cut(s)	261, 264
AclWI	GGATC	3 cut(s)	135, 162, 362
AcsI	RAATTY	1 cut(s)	53
AluBI	AGCT	2 cut(s)	34, 428
AluI	AGCT	2 cut(s)	34, 428
Alw21I	GWGCWC	1 cut(s)	79
Alw44I	GTGCAC	1 cut(s)	75
AlwI	GGATC	3 cut(s)	135, 162, 362
Ama87I	CYCGRG	1 cut(s)	80
ApaLI	GTGCAC	1 cut(s)	75
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	3 cut(s)	7, 108, 255
AsuC2I	CCSGG	3 cut(s)	81, 82, 411
AsuHPI	GGTGA	3 cut(s)	213, 355, 368
AvaI	CYCGRG	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	79
BccI	CCATC	1 cut(s)	336
BcnI	CCSGG	3 cut(s)	81, 82, 411
BfmI	CTRYAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	8
BisI	GCNGC	2 cut(s)	261, 264
BlsI	GCNGC	2 cut(s)	262, 265
Bme1390I	CCNGG	3 cut(s)	81, 82, 411
BmeT110I	CYCGRG	1 cut(s)	80
BmrFI	CCNGG	3 cut(s)	81, 82, 411
BmsI	GCATC	2 cut(s)	93, 183
BplI	GAGNNNNNCTC	2 cut(s)	287, 319
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	3 cut(s)	81, 82, 411
BsaJI	CCNNGG	2 cut(s)	80, 409
BseDI	CCNNGG	2 cut(s)	80, 409
BseRI	GAGGAG	2 cut(s)	262, 307
BseSI	GKGCMC	1 cut(s)	79
BsgI	GTGCAG	1 cut(s)	80
Bsh1236I	CGCG	1 cut(s)	253
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	81, 411
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	79, 410
Bsp143I	GATC	3 cut(s)	140, 167, 367
BspACI	CCGC	2 cut(s)	261, 264
BspFNI	CGCG	1 cut(s)	253
BspPI	GGATC	3 cut(s)	135, 162, 362
BssECI	CCNNGG	2 cut(s)	80, 409
BssMI	GATC	3 cut(s)	140, 167, 367
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	119, 151
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	209
BstFNI	CGCG	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	3 cut(s)	7, 108, 255
BstKTI	GATC	3 cut(s)	143, 170, 370
BstMBI	GATC	3 cut(s)	140, 167, 367
BstMWI	GCNNNNNNNGC	1 cut(s)	212
BstSCI	CCNGG	3 cut(s)	79, 80, 409
BstSFI	CTRYAG	1 cut(s)	39
BstSLI	GKGCMC	1 cut(s)	79
BstUI	CGCG	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	63
CfoI	GCGC	3 cut(s)	7, 108, 255
Cfr9I	CCCGGG	1 cut(s)	80
CviAII	CATG	2 cut(s)	68, 184
CviJI	RGCY	3 cut(s)	34, 408, 428
CviKI_1	RGCY	3 cut(s)	34, 408, 428
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	142, 169, 369
DpnII	GATC	3 cut(s)	140, 167, 367
Eam1104I	CTCTTC	2 cut(s)	119, 151
EarI	CTCTTC	2 cut(s)	119, 151
Eco24I	GRGCYC	1 cut(s)	410
Eco88I	CYCGRG	1 cut(s)	80
EcoT38I	GRGCYC	1 cut(s)	410
FaeI	CATG	2 cut(s)	71, 187
FaiI	YATR	6 cut(s)	17, 69, 122, 124, 185, 421
FatI	CATG	2 cut(s)	67, 183
FblI	GTMKAC	1 cut(s)	38
Fnu4HI	GCNGC	2 cut(s)	261, 264
FriOI	GRGCYC	1 cut(s)	410
Fsp4HI	GCNGC	2 cut(s)	261, 264
FspAI	RTGCGCAY	1 cut(s)	107
FspI	TGCGCA	1 cut(s)	107
GlaI	GCGC	3 cut(s)	6, 107, 254
GluI	GCNGC	2 cut(s)	261, 264
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	2 cut(s)	81, 411
HhaI	GCGC	3 cut(s)	7, 108, 255
Hin1II	CATG	2 cut(s)	71, 187
Hin6I	GCGC	3 cut(s)	5, 106, 253
HinP1I	GCGC	3 cut(s)	5, 106, 253
HincII	GTYRAC	1 cut(s)	347
HindII	GTYRAC	1 cut(s)	347
HinfI	GANTC	2 cut(s)	296, 360
HpaII	CCGG	2 cut(s)	81, 411
HphI	GGTGA	3 cut(s)	213, 355, 368
Hpy166II	GTNNAC	6 cut(s)	39, 77, 221, 300, 347, 359
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	2 cut(s)	49, 403
Hpy8I	GTNNAC	6 cut(s)	39, 77, 221, 300, 347, 359
HpyAV	CCTTC	4 cut(s)	181, 196, 301, 319
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	2 cut(s)	61, 77
HpyF10VI	GCNNNNNNNGC	1 cut(s)	212
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	71, 187
HspAI	GCGC	3 cut(s)	5, 106, 253
Kzo9I	GATC	3 cut(s)	140, 167, 367
LpnPI	CCDG	4 cut(s)	47, 94, 237, 424
LweI	GCATC	2 cut(s)	93, 183
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	3 cut(s)	142, 169, 369
MboI	GATC	3 cut(s)	140, 167, 367
MboII	GAAGA	2 cut(s)	106, 138
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	79, 410
MluCI	AATT	1 cut(s)	53
MlyI	GAGTC	2 cut(s)	305, 354
MmeI	TCCRAC	1 cut(s)	300
MseI	TTAA	2 cut(s)	128, 430
MslI	CAYNNNNRTG	1 cut(s)	72
MspI	CCGG	2 cut(s)	81, 411
MspR9I	CCNGG	3 cut(s)	81, 82, 411
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	212
NciI	CCSGG	3 cut(s)	81, 82, 411
NdeII	GATC	3 cut(s)	140, 167, 367
NlaIII	CATG	2 cut(s)	71, 187
NmuCI	GTSAC	1 cut(s)	134
NsbI	TGCGCA	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	399
PkrI	GCNGC	2 cut(s)	262, 265
PleI	GAGTC	2 cut(s)	304, 354
PpsI	GAGTC	2 cut(s)	304, 354
PsuI	RGATCY	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	72
SaqAI	TTAA	2 cut(s)	128, 430
SatI	GCNGC	2 cut(s)	261, 264
Sau3AI	GATC	3 cut(s)	140, 167, 367
SchI	GAGTC	2 cut(s)	305, 354
ScrFI	CCNGG	3 cut(s)	81, 82, 411
SduI	GDGCHC	2 cut(s)	79, 410
SetI	ASST	7 cut(s)	36, 226, 245, 305, 311, 381, 430
SfaNI	GCATC	2 cut(s)	93, 183
SfcI	CTRYAG	1 cut(s)	39
SmaI	CCCGGG	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	72
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	1 cut(s)	53
SsiI	CCGC	2 cut(s)	261, 264
StyD4I	CCNGG	3 cut(s)	79, 80, 409
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	3 cut(s)	294, 393, 424
TaqII	GACCGA	1 cut(s)	153
TasI	AATT	1 cut(s)	53
TauI	GCSGC	2 cut(s)	263, 266
Tru1I	TTAA	2 cut(s)	128, 430
Tru9I	TTAA	2 cut(s)	128, 430
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	4
TspGWI	ACGGA	1 cut(s)	332
TspMI	CCCGGG	1 cut(s)	80
TspRI	CASTG	1 cut(s)	139
VneI	GTGCAC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	53
XmaI	CCCGGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.