Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

18182040 .. 18193899

Gene Structure 11860 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGTCGAGGCTGAGCTCCCTGAAAAACAGCTCGGGAAACTCCTCCCCTCAGAGTCCGAATCTGATTGATGGAGAGGGAATCAAGAAATTAGCAACTATCATCAATCAGCATGGATTACGGACCAATCGATCTGCATCTCCAAATCTATCTCTCTCTCTCGACACCTCCCTCACGCGCCTCGCCGCCGCCAACTCCTCCGACCCCTCCCCTTCCTTCGAGTCCACCTCTGCCTTCCTCTCTTGGTTCCCCATCTCCAAGTCCTCCGTCAACTCCCAAGTGGACTCACCGATCCCACTCACCTCAAACCCTTCCTCGACCAAATCTCTCGCCTTAATCTCTCGACCTCGAGAAGGTAGTCGCCGAGAACTCCTACTCCCCTCATACAAAGTCCGATCGTCGCTAAAAATGGACGACCCACGAAGCCGAAGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

144

Amino Acids

15.58

Weight (kDa)

11.13

Isoelectric Point (pI)

74.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	175
AciI	CCGC	2 cut(s)	183, 186
AclWI	GGATC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	350
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	2 cut(s)	15, 30
AluI	AGCT	2 cut(s)	15, 30
Alw21I	GWGCWC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	283
Ama87I	CYCGRG	2 cut(s)	31, 345
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	120
AsuHPI	GGTGA	2 cut(s)	276, 289
AvaI	CYCGRG	2 cut(s)	31, 345
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	17
Bbv12I	GWGCWC	1 cut(s)	17
BccI	CCATC	2 cut(s)	62, 257
BisI	GCNGC	2 cut(s)	183, 186
BlpI	GCTNAGC	1 cut(s)	11
BlsI	GCNGC	2 cut(s)	184, 187
Bme18I	GGWCC	1 cut(s)	120
BmeT110I	CYCGRG	2 cut(s)	31, 345
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	245
BmsI	GCATC	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu1102I	GCTNAGC	1 cut(s)	11
Bsa29I	ATCGAT	1 cut(s)	127
BsaBI	GATNNNNATC	1 cut(s)	133
BsaXI	ACNNNNNCTCC	2 cut(s)	357, 387
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	133
BseCI	ATCGAT	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	133
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	1 cut(s)	62
BseRI	GAGGAG	2 cut(s)	31, 184
Bsh1236I	CGCG	1 cut(s)	175
Bsh1285I	CGRYCG	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	127
BsiEI	CGRYCG	1 cut(s)	395
BsiHKAI	GWGCWC	1 cut(s)	17
BsiHKCI	CYCGRG	2 cut(s)	31, 345
BslI	CCNNNNNNNGG	1 cut(s)	350
BsoBI	CYCGRG	2 cut(s)	31, 345
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	3 cut(s)	128, 288, 392
Bsp1720I	GCTNAGC	1 cut(s)	11
BspACI	CCGC	2 cut(s)	183, 186
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	1 cut(s)	127
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	283
BssMI	GATC	3 cut(s)	128, 288, 392
BstDEI	CTNAG	2 cut(s)	11, 48
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstFNI	CGCG	1 cut(s)	175
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	3 cut(s)	131, 291, 395
BstMBI	GATC	3 cut(s)	128, 288, 392
BstMCI	CGRYCG	1 cut(s)	395
BstUI	CGCG	1 cut(s)	175
Bsu15I	ATCGAT	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	127
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	127
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	4 cut(s)	10, 15, 30, 423
CviKI_1	RGCY	4 cut(s)	10, 15, 30, 423
DdeI	CTNAG	2 cut(s)	11, 48
DpnI	GATC	3 cut(s)	130, 290, 394
DpnII	GATC	3 cut(s)	128, 288, 392
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	15
Eco88I	CYCGRG	2 cut(s)	31, 345
EcoICRI	GAGCTC	1 cut(s)	15
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	1 cut(s)	113
FaiI	YATR	2 cut(s)	111, 382
FatI	CATG	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	183, 186
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	183, 186
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	2 cut(s)	183, 186
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	52, 58, 78, 218, 281
HphI	GGTGA	2 cut(s)	276, 289
Hpy166II	GTNNAC	3 cut(s)	222, 268, 280
Hpy188I	TCNGA	5 cut(s)	51, 57, 63, 199, 392
Hpy188III	TCNNGA	5 cut(s)	33, 82, 158, 339, 347
Hpy8I	GTNNAC	3 cut(s)	222, 268, 280
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	5 cut(s)	219, 223, 241, 318, 344
HpyCH4V	TGCA	1 cut(s)	134
HpyF3I	CTNAG	2 cut(s)	11, 48
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	3 cut(s)	128, 288, 392
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	1 cut(s)	32
LweI	GCATC	1 cut(s)	143
MalI	GATC	3 cut(s)	130, 290, 394
MboI	GATC	3 cut(s)	128, 288, 392
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	3 cut(s)	61, 227, 275
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	1 cut(s)	332
MvnI	CGCG	1 cut(s)	175
NdeII	GATC	3 cut(s)	128, 288, 392
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	245
NmeAIII	GCCGAG	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	345
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	58, 78
PkrI	GCNGC	2 cut(s)	184, 187
Ple19I	CGATCG	1 cut(s)	395
PleI	GAGTC	3 cut(s)	60, 226, 275
PpsI	GAGTC	3 cut(s)	60, 226, 275
Psp124BI	GAGCTC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	120
PvuI	CGATCG	1 cut(s)	395
SacI	GAGCTC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	332
SatI	GCNGC	2 cut(s)	183, 186
Sau3AI	GATC	3 cut(s)	128, 288, 392
Sau96I	GGNCC	1 cut(s)	120
SchI	GAGTC	3 cut(s)	61, 227, 275
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	7 cut(s)	17, 32, 167, 227, 302, 346, 355
SfaNI	GCATC	1 cut(s)	143
Sfr274I	CTCGAG	1 cut(s)	345
SinI	GGWCC	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	345
SmoI	CTYRAG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	183, 186
SstI	GAGCTC	1 cut(s)	17
TaqI	TCGA	7 cut(s)	5, 127, 159, 216, 314, 340, 346
TasI	AATT	1 cut(s)	86
TauI	GCSGC	2 cut(s)	185, 188
TfiI	GAWTC	2 cut(s)	58, 78
Tru1I	TTAA	1 cut(s)	332
Tru9I	TTAA	1 cut(s)	332
TspGWI	ACGGA	2 cut(s)	133, 253
VpaK11BI	GGWCC	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	348
XhoI	CTCGAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.