Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012562.1

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

30014 .. 31696

Gene Structure 1683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012562.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgcacagtattagttgtgtcacctatgaagccagattcctctgcttcaacaattctgtagacatgaggaaggggaatatggattttttgcatccatgtactgctaatagagtaactgagcgtcccgggtttaaagatgaagttcttatcaacttcattcatggtcttttggatgtaaagcgctttactcagagcaatgctaagataagcaaggaggctggaggagagtttaatatttttgatgggtcagtgatgggtaagaatttggagttgcattgtacagaattggagatttggaagttggccagatgggattctgtcaaccagtattcaaccagtatggtgcttactcttgaggagcctgaacgtggtcttaccatcgtcaagctaacgcatgtggattttcctgaagaagacagtgcccaatatttcagtggcagtccatcacatccaacagcaaatgaagcttccaccaacacaaaagagacttccaagcagattaaccaatggatgacactgatgaagatctcatgtaatgattggttcgaactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

5.36

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	60
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	262
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	100, 280
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	2 cut(s)	49, 333
AluBI	AGCT	2 cut(s)	388, 467
AluI	AGCT	2 cut(s)	388, 467
Alw26I	GTCTC	1 cut(s)	479
Ama87I	CYCGRG	1 cut(s)	125
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	303
ApoI	RAATTY	1 cut(s)	262
AspLEI	GCGC	1 cut(s)	183
AsuC2I	CCSGG	2 cut(s)	126, 127
AsuHPI	GGTGA	1 cut(s)	13
AsuII	TTCGAA	1 cut(s)	546
AvaI	CYCGRG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	305
BbsI	GAAGAC	1 cut(s)	420
BccI	CCATC	5 cut(s)	236, 247, 303, 386, 451
BcnI	CCSGG	2 cut(s)	126, 127
BcoDI	GTCTC	1 cut(s)	479
BfmI	CTRYAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	184
BglII	AGATCT	1 cut(s)	525
Bme1390I	CCNGG	2 cut(s)	126, 127
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	2 cut(s)	126, 127
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	240
Bpu14I	TTCGAA	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	126, 127
BsaBI	GATNNNNATC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
Bse1I	ACTGG	2 cut(s)	325, 336
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	4 cut(s)	91, 178, 448, 516
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	2 cut(s)	108, 203
BseNI	ACTGG	2 cut(s)	325, 336
BseRI	GAGGAG	2 cut(s)	237, 371
BseSI	GKGCMC	1 cut(s)	424
BshFI	GGCC	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	108
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmAI	GTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	305
BsoBI	CYCGRG	1 cut(s)	125
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp1407I	TGTACA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	525
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	2 cut(s)	109, 202
BspLI	GGNNCC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	325, 336
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	1 cut(s)	525
Bst4CI	ACNGT	2 cut(s)	8, 419
BstAUI	TGTACA	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	546
BstDEI	CTNAG	3 cut(s)	117, 189, 201
BstF5I	GGATG	4 cut(s)	91, 178, 448, 516
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	528
BstMAI	GTCTC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	525
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	124, 125
BstSFI	CTRYAG	1 cut(s)	57
BstSLI	GKGCMC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	4 cut(s)	91, 178, 448, 516
BtsIMutI	CAGTG	4 cut(s)	255, 424, 439, 515
CfoI	GCGC	1 cut(s)	183
Cfr9I	CCCGGG	1 cut(s)	125
CseI	GACGC	1 cut(s)	110
Csp6I	GTAC	2 cut(s)	99, 279
CviAII	CATG	5 cut(s)	64, 96, 161, 395, 531
CviJI	RGCY	6 cut(s)	32, 218, 305, 361, 388, 467
CviKI_1	RGCY	6 cut(s)	32, 218, 305, 361, 388, 467
CviQI	GTAC	2 cut(s)	99, 279
DdeI	CTNAG	3 cut(s)	117, 189, 201
DpnI	GATC	1 cut(s)	527
DpnII	GATC	1 cut(s)	525
DraI	TTTAAA	1 cut(s)	133
EaeI	YGGCCR	1 cut(s)	303
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	125
FaeI	CATG	5 cut(s)	67, 99, 164, 398, 534
FaiI	YATR	8 cut(s)	27, 65, 80, 97, 162, 341, 396, 532
FaqI	GGGAC	1 cut(s)	108
FatI	CATG	5 cut(s)	63, 95, 160, 394, 530
FblI	GTMKAC	1 cut(s)	60
FokI	GGATG	4 cut(s)	78, 185, 435, 523
GlaI	GCGC	1 cut(s)	182
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	305
HapII	CCGG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	110
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	5 cut(s)	67, 99, 164, 398, 534
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	1 cut(s)	465
HinfI	GANTC	2 cut(s)	36, 314
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	13
Hpy166II	GTNNAC	2 cut(s)	61, 322
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	2 cut(s)	353, 407
Hpy8I	GTNNAC	2 cut(s)	61, 322
HpyAV	CCTTC	1 cut(s)	64
HpyCH4III	ACNGT	2 cut(s)	8, 419
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	3 cut(s)	4, 91, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	3 cut(s)	117, 189, 201
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	67, 99, 164, 398, 534
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	525
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	46, 139, 204, 319, 338, 349, 375, 420
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	19, 112
MalI	GATC	1 cut(s)	527
MboI	GATC	1 cut(s)	525
MboII	GAAGA	3 cut(s)	422, 425, 535
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	1 cut(s)	424
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	3 cut(s)	52, 262, 284
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	5 cut(s)	50, 60, 208, 215, 349
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	3 cut(s)	132, 231, 501
Msp20I	TGGCCA	1 cut(s)	305
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	126, 127
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	2 cut(s)	126, 127
NdeII	GATC	1 cut(s)	525
NlaIII	CATG	5 cut(s)	67, 99, 164, 398, 534
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	36, 314
PspN4I	GGNNCC	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	525
RsaI	GTAC	2 cut(s)	100, 280
RsaNI	GTAC	2 cut(s)	99, 279
SaqAI	TTAA	3 cut(s)	132, 231, 501
Sau3AI	GATC	1 cut(s)	525
ScrFI	CCNGG	2 cut(s)	126, 127
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	4 cut(s)	26, 370, 390, 469
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	57
SfuI	TTCGAA	1 cut(s)	546
SmaI	CCCGGG	1 cut(s)	127
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	52, 262, 284
SspI	AATATT	2 cut(s)	235, 428
StyD4I	CCNGG	2 cut(s)	124, 125
TaaI	ACNGT	2 cut(s)	8, 419
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	546
TasI	AATT	3 cut(s)	52, 262, 284
TatI	WGTACW	2 cut(s)	98, 278
TfiI	GAWTC	2 cut(s)	36, 314
Tru1I	TTAA	3 cut(s)	132, 231, 501
Tru9I	TTAA	3 cut(s)	132, 231, 501
TscAI	CASTG	4 cut(s)	255, 424, 439, 522
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	6 cut(s)	42, 145, 149, 153, 477, 536
TspMI	CCCGGG	1 cut(s)	125
TspRI	CASTG	4 cut(s)	255, 424, 439, 522
XapI	RAATTY	1 cut(s)	262
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	431
XmaI	CCCGGG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.