Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

48576567 .. 48577494

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG288900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGGTCTGTGAGGGCTCTATTTGTTCCTAAGTTGAAGAATTTTAGGACTTCGGAGCCGACTCCGGCCATCAAATTCAACCCCGCGATGGAGGTGATGCCATCGGAGGTGGAGAAAAGAGAGGCGAAGTCGTCGTTATCGTCAACGACGTCGTTTTGGGGAGAGGAGAACAGATGGAAGCGCTTTACTCAGAGCAATGCTAAGATAAGCAAGGAGACTGGAGGAGAGTTTAACATTTGTGATGGGTCGGTGATGGGTAAGAATTTGGAGTTGCATTGTACAGAATTGGAGATTTGGAAGTTGGTGCTTACTCTTGAGGAGCCTGAACATGGTCTTACCATCATCAAGCTAACACATGTGGATGTTCCTGAAGAAGGCAGATCAATGCTGGGCAATAGGACATGCCGAGTGCCTAGAAGCCATCTACAAGCTCTACACTGGGGAGACGGTGGTTGTATCACCACAGCATATACAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008047 GO:0008150 GO:0030234 GO:0031072 GO:0032781 GO:0043085 GO:0043462 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0050790 GO:0051087 GO:0051336 GO:0051345 GO:0051879 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AHSA1 Aha1_N

Protein Analysis

159

Amino Acids

17.91

Weight (kDa)

7.72

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
AccII	CGCG	1 cut(s)	86
AciI	CCGC	1 cut(s)	84
AcoI	YGGCCR	1 cut(s)	66
AcsI	RAATTY	3 cut(s)	40, 74, 262
AcuI	CTGAAG	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	149
AfaI	GTAC	1 cut(s)	280
AfeI	AGCGCT	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	88, 329, 374
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	2 cut(s)	37, 79
AluBI	AGCT	2 cut(s)	349, 431
AluI	AGCT	2 cut(s)	349, 431
Alw26I	GTCTC	2 cut(s)	209, 438
Aor51HI	AGCGCT	1 cut(s)	182
AoxI	GGCC	1 cut(s)	66
ApoI	RAATTY	3 cut(s)	40, 74, 262
AspLEI	GCGC	1 cut(s)	183
AsuHPI	GGTGA	3 cut(s)	106, 262, 451
BanII	GRGCYC	1 cut(s)	19
BccI	CCATC	8 cut(s)	77, 82, 109, 168, 236, 247, 347, 429
BcoDI	GTCTC	2 cut(s)	209, 438
BfaI	CTAG	1 cut(s)	414
BfoI	RGCGCY	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	57, 321
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	1 cut(s)	87
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 329, 374
Bse1I	ACTGG	2 cut(s)	223, 443
Bse3DI	GCAATG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	3 cut(s)	88, 329, 374
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	2 cut(s)	223, 443
BseRI	GAGGAG	3 cut(s)	179, 237, 332
BseYI	CCCAGC	1 cut(s)	388
Bsh1236I	CGCG	1 cut(s)	86
BshFI	GGCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	88, 329, 374
BsmAI	GTCTC	2 cut(s)	209, 438
BsmBI	CGTCTC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	19
Bsp1407I	TGTACA	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	380
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	57, 321
BsrDI	GCAATG	1 cut(s)	202
BsrGI	TGTACA	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	223, 443
BssMI	GATC	1 cut(s)	380
BssNI	GRCGYC	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	449
BstACI	GRCGYC	1 cut(s)	149
BstAUI	TGTACA	1 cut(s)	278
BstDEI	CTNAG	3 cut(s)	30, 189, 201
BstENI	CCTNNNNNAGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	86
BstH2I	RGCGCY	1 cut(s)	184
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	1 cut(s)	383
BstMAI	GTCTC	2 cut(s)	209, 438
BstMBI	GATC	1 cut(s)	380
BstNSI	RCATGY	2 cut(s)	359, 405
BstUI	CGCG	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	68
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	367
BtsIMutI	CAGTG	1 cut(s)	436
CfoI	GCGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	279
CviAII	CATG	3 cut(s)	329, 356, 402
CviJI	RGCY	7 cut(s)	17, 58, 68, 322, 349, 420, 431
CviKI_1	RGCY	7 cut(s)	17, 58, 68, 322, 349, 420, 431
CviQI	GTAC	1 cut(s)	279
DdeI	CTNAG	3 cut(s)	30, 189, 201
DpnI	GATC	1 cut(s)	382
DpnII	GATC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	19
Eco47III	AGCGCT	1 cut(s)	182
Eco57I	CTGAAG	1 cut(s)	390
EcoNI	CCTNNNNNAGG	1 cut(s)	372
EcoT38I	GRGCYC	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	438
FaeI	CATG	3 cut(s)	332, 359, 405
FaiI	YATR	5 cut(s)	330, 357, 403, 469, 471
FatI	CATG	3 cut(s)	328, 355, 401
FauI	CCCGC	1 cut(s)	91
FokI	GGATG	1 cut(s)	374
FriOI	GRGCYC	1 cut(s)	19
FspBI	CTAG	1 cut(s)	414
GlaI	GCGC	1 cut(s)	182
GsaI	CCCAGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	184
HaeIII	GGCC	1 cut(s)	68
HapII	CCGG	1 cut(s)	65
HhaI	GCGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	332, 359, 405
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	61
HpaII	CCGG	1 cut(s)	65
HphI	GGTGA	3 cut(s)	106, 262, 451
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	3 cut(s)	55, 106, 192
Hpy188III	TCNNGA	2 cut(s)	314, 368
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	3 cut(s)	136, 151, 154
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4IV	ACGT	1 cut(s)	149
HpyCH4V	TGCA	1 cut(s)	274
HpyF3I	CTNAG	3 cut(s)	30, 189, 201
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	1 cut(s)	149
Hsp92II	CATG	3 cut(s)	332, 359, 405
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	1 cut(s)	380
LmnI	GCTCC	2 cut(s)	55, 319
LpnPI	CCDG	6 cut(s)	78, 204, 336, 374, 381, 424
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	414
MaeII	ACGT	1 cut(s)	149
MalI	GATC	1 cut(s)	382
MboI	GATC	1 cut(s)	380
MboII	GAAGA	2 cut(s)	49, 383
MhlI	GDGCHC	1 cut(s)	19
MluCI	AATT	4 cut(s)	40, 74, 262, 284
MlyI	GAGTC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	6, 85, 100, 115, 157, 215, 310
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	360
MspI	CCGG	1 cut(s)	65
MvnI	CGCG	1 cut(s)	86
NdeII	GATC	1 cut(s)	380
NlaIII	CATG	3 cut(s)	332, 359, 405
NlaIV	GGNNCC	2 cut(s)	57, 321
NmeAIII	GCCGAG	1 cut(s)	431
NspI	RCATGY	2 cut(s)	359, 405
PciI	ACATGT	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	2 cut(s)	137, 146
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PscI	ACATGT	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	388
PspN4I	GGNNCC	2 cut(s)	57, 321
RsaI	GTAC	1 cut(s)	280
RsaNI	GTAC	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	231
Sau3AI	GATC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	55
SduI	GDGCHC	1 cut(s)	19
SetI	ASST	5 cut(s)	96, 111, 152, 351, 433
SfaNI	GCATC	1 cut(s)	87
SmiMI	CAYNNNNRTG	1 cut(s)	360
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	4 cut(s)	40, 74, 262, 284
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	1 cut(s)	414
TaaI	ACNGT	1 cut(s)	449
TaiI	ACGT	1 cut(s)	152
TasI	AATT	4 cut(s)	40, 74, 262, 284
TatI	WGTACW	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	1 cut(s)	443
TspRI	CASTG	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	372
XapI	RAATTY	3 cut(s)	40, 74, 262
XceI	RCATGY	2 cut(s)	359, 405
XspI	CTAG	1 cut(s)	414
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.