Rh1BG224700

Serine arginine repetitive matrix protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0004250
Physical Location & Seq
Reverse (-)
34435269 .. 34445377
10109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG224700.1

Sequence Viewer

Length: 489 bp
ATGGGTTTGAGAAAGCTAATTAACCATCAAAAGTGCAGGCAGTCATATATCTTTCTTGCATCTTTGGTTCTCGGATTTGCCTGTGTAATTCATCAAGTGCAAGAGGCCTCCAAGTACAAGGCCCTTCACTGTCATCAAAAACAGGAAGTGTTAAGAAGCTTCACATCTCAGGCATTGAAAACTTCCAGAATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGCGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCTTCCCGGGTTTAAAGATGAAGTTCATATCAACTTCATTCATGGTCTTTTGGATGTAAAGGAAGTGAATGGAAAAGAAATTCAAATTTCTTTTGACACAAATACTGTGCTGAACATCCCTGAGAATTCCATTAGAATTTATCTTAGTAATCCAATAGATGAAATAGCAATCTTTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko03015 map03013 map03015
Pfam Domains
Protein Families
PWI

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

8.55

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 249
AcsI RAATTY 4 cut(s) 387, 393, 433, 444
AfaI GTAC 2 cut(s) 116, 289
AgsI TTSAA 3 cut(s) 178, 238, 392
AluBI AGCT 3 cut(s) 16, 159, 310
AluI AGCT 3 cut(s) 16, 159, 310
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 105, 120
ApoI RAATTY 4 cut(s) 387, 393, 433, 444
AspS9I GGNCC 1 cut(s) 121
AsuC2I CCSGG 2 cut(s) 315, 316
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 314
BarI GAAGNNNNNNTAC 2 cut(s) 294, 326
BccI CCATC 1 cut(s) 33
BcnI CCSGG 2 cut(s) 315, 316
BfmI CTRYAG 1 cut(s) 246
Bme1390I CCNGG 2 cut(s) 315, 316
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 121
BmrFI CCNGG 2 cut(s) 315, 316
BmsI GCATC 2 cut(s) 68, 289
BpuMI CCSGG 2 cut(s) 315, 316
BsaJI CCNNGG 1 cut(s) 314
BseDI CCNNGG 1 cut(s) 314
BseGI GGATG 3 cut(s) 280, 367, 423
BseMII CTCAG 3 cut(s) 182, 297, 420
BsgI GTGCAG 1 cut(s) 55
BshFI GGCC 2 cut(s) 107, 122
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 1 cut(s) 315
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 107, 122
BsoBI CYCGRG 1 cut(s) 314
BspANI GGCC 2 cut(s) 107, 122
BspCNI CTCAG 3 cut(s) 181, 298, 421
BssECI CCNNGG 1 cut(s) 314
Bst4CI ACNGT 3 cut(s) 131, 197, 415
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 38
BstDEI CTNAG 4 cut(s) 168, 306, 429, 452
BstF5I GGATG 3 cut(s) 280, 367, 423
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstSCI CCNGG 2 cut(s) 313, 314
BstSFI CTRYAG 1 cut(s) 246
BsuRI GGCC 2 cut(s) 107, 122
BtsCI GGATG 3 cut(s) 280, 367, 423
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 38
Cfr13I GGNCC 1 cut(s) 121
Cfr9I CCCGGG 1 cut(s) 314
Csp6I GTAC 2 cut(s) 115, 288
CviAII CATG 3 cut(s) 253, 285, 350
CviJI RGCY 6 cut(s) 16, 107, 122, 159, 221, 310
CviKI_1 RGCY 6 cut(s) 16, 107, 122, 159, 221, 310
CviQI GTAC 2 cut(s) 115, 288
DdeI CTNAG 4 cut(s) 168, 306, 429, 452
DraI TTTAAA 1 cut(s) 322
Eco147I AGGCCT 1 cut(s) 107
Eco88I CYCGRG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 121
EcoRI GAATTC 1 cut(s) 433
FaeI CATG 3 cut(s) 256, 288, 353
FaiI YATR 8 cut(s) 46, 48, 216, 254, 269, 286, 336, 351
FatI CATG 3 cut(s) 252, 284, 349
FblI GTMKAC 1 cut(s) 249
FokI GGATG 3 cut(s) 267, 374, 410
HaeIII GGCC 2 cut(s) 107, 122
HapII CCGG 1 cut(s) 315
Hin1II CATG 3 cut(s) 256, 288, 353
HindIII AAGCTT 1 cut(s) 157
HinfI GANTC 1 cut(s) 225
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 186
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 134, 253
HpyCH4III ACNGT 3 cut(s) 131, 197, 415
HpyCH4V TGCA 5 cut(s) 36, 59, 100, 193, 280
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 4 cut(s) 168, 306, 429, 452
Hsp92II CATG 3 cut(s) 256, 288, 353
LpnPI CCDG 8 cut(s) 22, 94, 128, 155, 199, 235, 328, 441
LweI GCATC 2 cut(s) 68, 289
MaeIII GTNAC 2 cut(s) 208, 301
MluCI AATT 7 cut(s) 18, 87, 241, 387, 393, 433, 444
MnlI CCTC 4 cut(s) 97, 118, 239, 249
MseI TTAA 4 cut(s) 21, 152, 321, 487
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 2 cut(s) 315, 316
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 482
NciI CCSGG 2 cut(s) 315, 316
NlaIII CATG 3 cut(s) 256, 288, 353
NmuCI GTSAC 1 cut(s) 208
PceI AGGCCT 1 cut(s) 107
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 225
PspPI GGNCC 1 cut(s) 121
RsaI GTAC 2 cut(s) 116, 289
RsaNI GTAC 2 cut(s) 115, 288
SaqAI TTAA 4 cut(s) 21, 152, 321, 487
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 315, 316
SetI ASST 4 cut(s) 18, 161, 215, 312
SfaNI GCATC 2 cut(s) 68, 289
SfcI CTRYAG 1 cut(s) 246
SmaI CCCGGG 1 cut(s) 316
Sse9I AATT 7 cut(s) 18, 87, 241, 387, 393, 433, 444
SseBI AGGCCT 1 cut(s) 107
StuI AGGCCT 1 cut(s) 107
StyD4I CCNGG 2 cut(s) 313, 314
TaaI ACNGT 3 cut(s) 131, 197, 415
TasI AATT 7 cut(s) 18, 87, 241, 387, 393, 433, 444
TatI WGTACW 2 cut(s) 114, 287
TfiI GAWTC 1 cut(s) 225
Tru1I TTAA 4 cut(s) 21, 152, 321, 487
Tru9I TTAA 4 cut(s) 21, 152, 321, 487
TscAI CASTG 1 cut(s) 134
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 7 cut(s) 80, 231, 323, 334, 338, 342, 483
TspMI CCCGGG 1 cut(s) 314
TspRI CASTG 1 cut(s) 134
XapI RAATTY 4 cut(s) 387, 393, 433, 444
XmaI CCCGGG 1 cut(s) 314
XmiI GTMKAC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.