RchiOBHm_Chr2g0122681

Activator of 90 kDa heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
35701470 .. 35701792
323 bp
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UTR
Exon/CDS
Intron
PRQ49505

Sequence Viewer

Length: 279 bp
ATGGGTAAAAATTTGGGGTTGCATTGTACAGAATTGGAGATTTGGAAGTTGGCCAGATGGGATTTAGTCAACAGTATAGTTATATTGTTGTGTTGTTGGTTGGTGCTTACTCTTGAGGAGCCTGAACGTGGTATTATCATCATCAAGCTAACGCATGTGGATGTTCCTGAAGACAGGTTATTTCTCAGCTTTTGTTTTGTAGTTTTTGGTATTCCCACCATTTACTATTCACATATTTTATCAAATATAAAAACTCGTAAATATTTTTTTTATCAATAG

Protein Analysis

92

Amino Acids

10.89

Weight (kDa)

6.81

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 51
AcsI RAATTY 1 cut(s) 10
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 128
AluBI AGCT 2 cut(s) 148, 189
AluI AGCT 2 cut(s) 148, 189
AoxI GGCC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 10
BalI TGGCCA 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 177
BccI CCATC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 120
BpiI GAAGAC 1 cut(s) 177
BpuEI CTTGAG 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 128
BseMII CTCAG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 131
BshFI GGCC 1 cut(s) 53
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 1 cut(s) 53
Bsp1407I TGTACA 1 cut(s) 26
BspANI GGCC 1 cut(s) 53
BspCNI CTCAG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 74
BstAUI TGTACA 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 158
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 53
BtsCI GGATG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 27
CviAII CATG 1 cut(s) 155
CviJI RGCY 4 cut(s) 53, 121, 148, 189
CviKI_1 RGCY 4 cut(s) 53, 121, 148, 189
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 189
FaeI CATG 1 cut(s) 158
FaiI YATR 5 cut(s) 77, 83, 156, 234, 248
FatI CATG 1 cut(s) 154
FokI GGATG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 53
Hin1II CATG 1 cut(s) 158
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 2 cut(s) 113, 167
Hpy8I GTNNAC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 74
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 185
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 158
LmnI GCTCC 1 cut(s) 118
LpnPI CCDG 4 cut(s) 67, 135, 160, 180
MaeII ACGT 1 cut(s) 127
MboII GAAGA 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 2 cut(s) 10, 32
MluNI TGGCCA 1 cut(s) 53
MnlI CCTC 1 cut(s) 109
Mox20I TGGCCA 1 cut(s) 53
MscI TGGCCA 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 53
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 120
NspI RCATGY 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 120
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
RseI CAYNNNNRTG 1 cut(s) 159
SetI ASST 4 cut(s) 130, 150, 179, 191
SgeI CNNG 9 cut(s) 66, 125, 134, 140, 157, 167, 179, 187, 267
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 10, 32
SspI AATATT 1 cut(s) 263
TaaI ACNGT 1 cut(s) 74
TaiI ACGT 1 cut(s) 130
TasI AATT 2 cut(s) 10, 32
TatI WGTACW 1 cut(s) 26
XapI RAATTY 1 cut(s) 10
XceI RCATGY 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.