Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

17824430 .. 17827418

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0203700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGTTGAAGTCGCGGGTCGGATGGGTGCTAGTGAACCAGATTGGTGCTGATGGTATAGTTCCCGCATCCATTCTGAAAAGAGTGGCCGATAAAGCTTGGCCTTGCGACAATTGGGTTGGAGGAGTGCTGGTAGTGTTGACCGTATGCAGGGGGAGGTTCGATGCAATTGGGGGTGATATGAGGCAGGCTGTGAAGTTCCGATGTAGGTGGGGCTCCGGTATAGGTGGTGGCGACCCGAGGCAGGAGATGTGGCAAAATTGGGTTGGGCTTGGCTGGTTGCATGTGGTCTCATTACTACCTGAGCTTGGGCTCACTTCCTGGGCCCTACCCAGCCCCGCTGCCGTAGCTTGTGCGCCGCACCTCATTTCTGCAACCATGGGAGCTTACAAGTATGTGTCGGAGCTATGGCGGAAGAAGCAATCTGATGTGATGGGATTCGTCCAGAGGGTTCGCTGCTGGGACTACCGTCAGCATCCTTCGATTGTCCGAGTCACAAGGCCCACCCGCCCTGACAAGGCTCGCCGTCTCGGCTACAAGGCCAAGCAGGGATATGTTATCTACCGTGTCCGTGTGAGGCGTGGTGGTCGCAAGAGGCCAGTTGCCAAGGGTATCGTGTATGGTAAGCCCACCAACCAGGGAGTTACTCAACTAAAGTTCCAACGCAGCAAGAGGTCTGTTGCTGAGGAGCGTGCTGGGCGTAAGTTGGGTGGCCTTAGGGTTCTCAATTCCTACTGGATCAATGAGGATTCTACCTACAAGTACTTCGAGGTTATTCTCGTTGATGTTGCTCACACAGTTATCAAGAAAGACCCAAGAATCAACTGGATTGTCAATCCTGTTCACAAGCACAGAGAGCTTCGTGGTCTCACATCTGCTGGGAAGAAATACAGGGGACTGCGTGGAAAGGGCCACAATTACCACAAGAATCGTCCTTCTCGCAGGGCAACCTGGAAGAGAAACAACACCCTCTCCCTTCGTCGCTACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0008139 GO:0008150 GO:0008152 GO:0008270 GO:0009636 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032182 GO:0032446 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0042493 GO:0043130 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045471 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04014 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04014 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

BRAP2 zf-RING_2 zf-UBP

Protein Analysis

329

Amino Acids

37.62

Weight (kDa)

11.06

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L15e	PF00827	127 - 315	1.2e-88	Ribosomal L15

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	6 cut(s)	13, 63, 336, 356, 409, 505
AclWI	GGATC	1 cut(s)	743
AcoI	YGGCCR	1 cut(s)	84
AfaI	GTAC	1 cut(s)	761
AfiI	CCNNNNNNNGG	4 cut(s)	147, 241, 305, 514
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	3 cut(s)	317, 633, 947
AluBI	AGCT	6 cut(s)	95, 304, 347, 383, 403, 856
AluI	AGCT	6 cut(s)	95, 304, 347, 383, 403, 856
Alw26I	GTCTC	3 cut(s)	292, 530, 869
AlwI	GGATC	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	235
AoxI	GGCC	8 cut(s)	84, 98, 321, 497, 537, 593, 709, 907
ApaI	GGGCCC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	338, 453, 663
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	4 cut(s)	321, 322, 498, 907
AsuHPI	GGTGA	1 cut(s)	185
AvaI	CYCGRG	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	713
BaeGI	GKGCMC	1 cut(s)	325
BanII	GRGCYC	3 cut(s)	215, 312, 325
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	3 cut(s)	325, 440, 675
BccI	CCATC	3 cut(s)	15, 44, 424
BceAI	ACGGC	2 cut(s)	326, 507
BciT130I	CCWGG	3 cut(s)	319, 635, 949
BcoDI	GTCTC	3 cut(s)	292, 530, 869
BfaI	CTAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	528
BisI	GCNGC	4 cut(s)	339, 356, 454, 664
BlsI	GCNGC	4 cut(s)	340, 357, 455, 665
BmcAI	AGTACT	1 cut(s)	761
Bme1390I	CCNGG	3 cut(s)	319, 635, 949
BmeT110I	CYCGRG	1 cut(s)	235
BmgT120I	GGNCC	4 cut(s)	321, 322, 498, 907
BmiI	GGNNCC	2 cut(s)	214, 323
BmrFI	CCNGG	3 cut(s)	319, 635, 949
BmsI	GCATC	3 cut(s)	74, 151, 481
BoxI	GACNNNNGTC	1 cut(s)	465
Bpu10I	CCTNAGC	2 cut(s)	300, 681
BsaI	GGTCTC	2 cut(s)	292, 869
BsaJI	CCNNGG	5 cut(s)	236, 318, 375, 603, 634
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	114, 144, 953, 983
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 241, 305, 514
Bse1I	ACTGG	3 cut(s)	596, 737, 827
Bse21I	CCTNAGG	1 cut(s)	713
BseBI	CCWGG	3 cut(s)	319, 635, 949
BseDI	CCNNGG	5 cut(s)	236, 318, 375, 603, 634
BseGI	GGATG	3 cut(s)	26, 65, 472
BseLI	CCNNNNNNNGG	4 cut(s)	147, 241, 305, 514
BseMII	CTCAG	2 cut(s)	291, 672
BseNI	ACTGG	3 cut(s)	596, 737, 827
BseRI	GAGGAG	2 cut(s)	135, 698
BseSI	GKGCMC	1 cut(s)	325
BseXI	GCAGC	3 cut(s)	325, 440, 675
BseYI	CCCAGC	4 cut(s)	329, 456, 692, 875
Bsh1236I	CGCG	1 cut(s)	13
BshFI	GGCC	8 cut(s)	86, 100, 323, 499, 539, 595, 711, 909
BsiHKCI	CYCGRG	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	2 cut(s)	473, 906
BslI	CCNNNNNNNGG	4 cut(s)	147, 241, 305, 514
BsmAI	GTCTC	3 cut(s)	292, 530, 869
BsmBI	CGTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	473, 906
BsnI	GGCC	8 cut(s)	86, 100, 323, 499, 539, 595, 711, 909
Bso31I	GGTCTC	2 cut(s)	292, 869
BsoBI	CYCGRG	1 cut(s)	235
Bsp120I	GGGCCC	1 cut(s)	321
Bsp1286I	GDGCHC	3 cut(s)	215, 312, 325
Bsp143I	GATC	1 cut(s)	735
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	6 cut(s)	13, 63, 336, 356, 409, 505
BspANI	GGCC	8 cut(s)	86, 100, 323, 499, 539, 595, 711, 909
BspCNI	CTCAG	2 cut(s)	292, 673
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	214, 323
BspPI	GGATC	1 cut(s)	743
BspTNI	GGTCTC	2 cut(s)	292, 869
BsrI	ACTGG	3 cut(s)	596, 737, 827
BssECI	CCNNGG	5 cut(s)	236, 318, 375, 603, 634
BssMI	GATC	1 cut(s)	735
BssT1I	CCWWGG	2 cut(s)	375, 603
Bst2UI	CCWGG	3 cut(s)	319, 635, 949
Bst4CI	ACNGT	5 cut(s)	142, 467, 563, 796, 986
Bst6I	CTCTTC	1 cut(s)	947
BstC8I	GCNNGC	3 cut(s)	186, 520, 690
BstDEI	CTNAG	3 cut(s)	300, 681, 713
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	3 cut(s)	26, 65, 472
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	1 cut(s)	738
BstMAI	GTCTC	3 cut(s)	292, 530, 869
BstMBI	GATC	1 cut(s)	735
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 344, 415, 528, 694, 853
BstNI	CCWGG	3 cut(s)	319, 635, 949
BstNSI	RCATGY	1 cut(s)	284
BstPAI	GACNNNNGTC	1 cut(s)	465
BstSCI	CCNGG	3 cut(s)	317, 633, 947
BstSLI	GKGCMC	1 cut(s)	325
BstUI	CGCG	1 cut(s)	13
BstV1I	GCAGC	3 cut(s)	325, 440, 675
Bsu36I	CCTNAGG	1 cut(s)	713
BsuRI	GGCC	8 cut(s)	86, 100, 323, 499, 539, 595, 711, 909
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	3 cut(s)	26, 65, 472
Cac8I	GCNNGC	3 cut(s)	186, 520, 690
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	4 cut(s)	321, 322, 498, 907
Csp6I	GTAC	1 cut(s)	760
CviAII	CATG	2 cut(s)	281, 376
CviQI	GTAC	1 cut(s)	760
DdeI	CTNAG	3 cut(s)	300, 681, 713
DpnI	GATC	1 cut(s)	737
DpnII	GATC	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	947
EarI	CTCTTC	1 cut(s)	947
EciI	GGCGGA	1 cut(s)	424
Eco130I	CCWWGG	2 cut(s)	375, 603
Eco24I	GRGCYC	3 cut(s)	215, 312, 325
Eco31I	GGTCTC	2 cut(s)	292, 869
Eco81I	CCTNAGG	1 cut(s)	713
Eco88I	CYCGRG	1 cut(s)	235
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRII	CCWGG	3 cut(s)	317, 633, 947
EcoT14I	CCWWGG	2 cut(s)	375, 603
EcoT38I	GRGCYC	3 cut(s)	215, 312, 325
ErhI	CCWWGG	2 cut(s)	375, 603
Esp3I	CGTCTC	1 cut(s)	530
FaeI	CATG	2 cut(s)	284, 379
FaqI	GGGAC	2 cut(s)	473, 906
FatI	CATG	2 cut(s)	280, 375
FauI	CCCGC	4 cut(s)	6, 70, 343, 512
Fnu4HI	GCNGC	4 cut(s)	339, 356, 454, 664
FokI	GGATG	3 cut(s)	33, 52, 459
FriOI	GRGCYC	3 cut(s)	215, 312, 325
Fsp4HI	GCNGC	4 cut(s)	339, 356, 454, 664
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	4 cut(s)	339, 356, 454, 664
GsaI	CCCAGC	4 cut(s)	333, 460, 696, 879
HaeIII	GGCC	8 cut(s)	86, 100, 323, 499, 539, 595, 711, 909
HapII	CCGG	1 cut(s)	216
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	284, 379
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HindIII	AAGCTT	1 cut(s)	93
HinfI	GANTC	5 cut(s)	435, 489, 746, 816, 925
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	3 cut(s)	34, 138, 841
Hpy188I	TCNGA	6 cut(s)	20, 75, 200, 400, 424, 488
Hpy188III	TCNNGA	2 cut(s)	442, 802
Hpy8I	GTNNAC	3 cut(s)	34, 138, 841
Hpy99I	CGWCG	1 cut(s)	981
HpyAV	CCTTC	3 cut(s)	486, 942, 983
HpyCH4III	ACNGT	5 cut(s)	142, 467, 563, 796, 986
HpyCH4V	TGCA	4 cut(s)	147, 164, 280, 371
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 344, 415, 528, 694, 853
HpyF3I	CTNAG	3 cut(s)	300, 681, 713
Hsp92II	CATG	2 cut(s)	284, 379
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	1 cut(s)	735
LmnI	GCTCC	4 cut(s)	218, 380, 400, 685
Lsp1109I	GCAGC	3 cut(s)	325, 440, 675
LweI	GCATC	3 cut(s)	74, 151, 481
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	490, 640
MalI	GATC	1 cut(s)	737
MboI	GATC	1 cut(s)	735
MboII	GAAGA	3 cut(s)	424, 892, 964
MfeI	CAATTG	2 cut(s)	109, 165
MhlI	GDGCHC	3 cut(s)	215, 312, 325
MluCI	AATT	5 cut(s)	109, 165, 256, 724, 913
MlyI	GAGTC	1 cut(s)	498
MmeI	TCCRAC	3 cut(s)	97, 378, 682
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	3 cut(s)	319, 635, 949
MunI	CAATTG	2 cut(s)	109, 165
MvaI	CCWGG	3 cut(s)	319, 635, 949
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	6 cut(s)	92, 344, 415, 528, 694, 853
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	1 cut(s)	735
NlaIII	CATG	2 cut(s)	284, 379
NlaIV	GGNNCC	2 cut(s)	214, 323
NmeAIII	GCCGAG	1 cut(s)	507
NmuCI	GTSAC	1 cut(s)	490
NspI	RCATGY	1 cut(s)	284
PcsI	WCGNNNNNNNCGW	1 cut(s)	982
PfeI	GAWTC	4 cut(s)	435, 746, 816, 925
PkrI	GCNGC	4 cut(s)	340, 357, 455, 665
PleI	GAGTC	1 cut(s)	497
PpsI	GAGTC	1 cut(s)	497
PshAI	GACNNNNGTC	1 cut(s)	465
Psp6I	CCWGG	3 cut(s)	317, 633, 947
PspFI	CCCAGC	4 cut(s)	329, 456, 692, 875
PspGI	CCWGG	3 cut(s)	317, 633, 947
PspN4I	GGNNCC	2 cut(s)	214, 323
PspOMI	GGGCCC	1 cut(s)	321
PspPI	GGNCC	4 cut(s)	321, 322, 498, 907
RsaI	GTAC	1 cut(s)	761
RsaNI	GTAC	1 cut(s)	760
SatI	GCNGC	4 cut(s)	339, 356, 454, 664
Sau3AI	GATC	1 cut(s)	735
Sau96I	GGNCC	4 cut(s)	321, 322, 498, 907
ScaI	AGTACT	1 cut(s)	761
SchI	GAGTC	1 cut(s)	498
ScrFI	CCNGG	3 cut(s)	319, 635, 949
SduI	GDGCHC	3 cut(s)	215, 312, 325
SfaNI	GCATC	3 cut(s)	74, 151, 481
Sse9I	AATT	5 cut(s)	109, 165, 256, 724, 913
SsiI	CCGC	6 cut(s)	13, 63, 336, 356, 409, 505
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	317, 633, 947
StyI	CCWWGG	2 cut(s)	375, 603
TaaI	ACNGT	5 cut(s)	142, 467, 563, 796, 986
TaqI	TCGA	3 cut(s)	159, 479, 765
TasI	AATT	5 cut(s)	109, 165, 256, 724, 913
TatI	WGTACW	1 cut(s)	759
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	4 cut(s)	435, 746, 816, 925
TseFI	GTSAC	1 cut(s)	490
TseI	GCWGC	3 cut(s)	338, 453, 663
Tsp45I	GTSAC	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	557
XceI	RCATGY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	819
XspI	CTAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.