Rorug01G0125100

BRCA1-associated protein 2

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
21441170 .. 21445370
4201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0125100.1

Sequence Viewer

Length: 1398 bp
ATGAAGCTGGATGTGGATGTGTTGAGATACCTCACTAAAGAGGATTTCAGGGTTTTAACCGCTGTCGAAATGGGAATGCGAAATCATGAAATCGTACCCGCTGAACTGGTGGAGCGTATAGCTGCTCTCAAGCATGGTGGCACTTACAAAGTTATGAAAAATCTGCTCAAGCATAAGCTCTTGCACCACGACGCCTCTAAATATGATGGGTTTCGGCTAACGTACCTCGGTTATGATTTTCTTGCAATTAAGACTTTGGTCAACCGTGGAGTCTTTTCAGCCGTTGGTCGCCAACTTGGTGTTGGAAAAGAGTCTGATATTTTTGAGGTGGCCACCGAAGATGGTACGGTGATGGCAATGAAATTGCACAGGCTTGGTAGAACTTCTTTCAGGGCTGTCAAGTCTAAGCGTGATTACTTAAAACATCGTAGCAGTTTCAATTGGCTATACTTGTCCCGTCTTGCTGCACTCAGAGAATTTTCTTTTATGAAGGCTTTAGAAGAGCATGGTTTTCCTGTTCCAAATGCAGTAGATTGTAACAGGCATTGTGTGATTATGTCACTAGTACCAGGCTACCCCCTTGTGCAGGTGAAGCAATTGGAAAATCCTGAGACAGTTTTCAATACTATCATTGGGCTCGTTGTTCGTCTGGCAGAGCATGGTTTGATTCATTGTGACTTCAATGAATTTAACATTATGATTGATGATGACGAGAAGGTCACCATGATTGATTTTCCCCAAATGGTCTCTGTATCCCATCGTAATGCACAAATGTACTTTGATCGTGATGTGGAATGTGTCTTTAAGTTTTTCAGCAAGAGATTCAACATGTCTTTCCATGAATGCACAGCTGATATTGATGGAACAGCGGTGGACACAGATGATAGTGGCAGGCCTTCGTTTACTTCAATAGCGAAAGATACTGGTTTTCTAGACAAGGAACTTTCTGCTAGTGGGTTTACTAGGAAGGATCAGGAAGAAATTGCTAAGTTTATTGAAGGAGGGATCAGGCAGGATTCTAGTTCTGATGATGAAGATACTGAAGATGACGAGCACATCTCTGTGTTAAATGAAGCAAACACAATGGGTGTTGATTCACTGCATGTGGCAGATCAGCATGATGAGCAAGTTGAACCAGAGGGCAATGTAAGAACATGTGAAGCAGGTCCCAGCAGTGAACCCGAAAATGAAGATGGGAGTAATGAGGAGGGAGATAATGAGACAGTTAATAATGACAATGATGCTGAGCTGGAAAAACGCTTGAACAAGGTGAGGCGACGTGCTGTAACAGCAGCCCGTGGAGGACGAAAAACTTTTGCATCCAGAAATACCTACAAAGACAAGGGTGGTAAATCCTCTAACAGTTCCAAAATCCAGAGACAATTAAGTAGCTGGTAG

Protein Analysis

465

Amino Acids

52.59

Weight (kDa)

5.53

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rio2_N PF09202 8 - 89 6.4e-34 Rio2, N-terminal
RIO1 PF01163 106 - 280 5.3e-55 RIO domain
ABC1 PF03109 170 - 260 2.7e-07 ABC1 atypical kinase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 577
AasI GACNNNNNNGTC 1 cut(s) 716
Acc36I ACCTGC 2 cut(s) 577, 1154
AciI CCGC 3 cut(s) 60, 99, 869
AclWI GGATC 2 cut(s) 978, 1013
AcoI YGGCCR 1 cut(s) 330
AcsI RAATTY 2 cut(s) 476, 686
AcuI CTGAAG 1 cut(s) 1062
AcyI GRCGYC 1 cut(s) 192
AfaI GTAC 5 cut(s) 96, 224, 346, 567, 776
AfiI CCNNNNNNNGG 1 cut(s) 586
AflIII ACRYGT 2 cut(s) 828, 1154
AgsI TTSAA 8 cut(s) 439, 622, 682, 826, 909, 998, 1133, 1264
AhlI ACTAGT 1 cut(s) 562
AjiI CACGTC 1 cut(s) 1280
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 6 cut(s) 7, 122, 178, 851, 1249, 1392
AluI AGCT 6 cut(s) 7, 122, 178, 851, 1249, 1392
Alw21I GWGCWC 1 cut(s) 1056
Alw26I GTCTC 4 cut(s) 605, 751, 1214, 1372
AlwI GGATC 2 cut(s) 978, 1013
AoxI GGCC 2 cut(s) 330, 893
ApeKI GCWGC 3 cut(s) 122, 464, 1292
ApoI RAATTY 2 cut(s) 476, 686
AspS9I GGNCC 1 cut(s) 1166
AsuHPI GGTGA 4 cut(s) 361, 601, 712, 1282
AvaII GGWCC 1 cut(s) 1166
BalI TGGCCA 1 cut(s) 332
BanII GRGCYC 1 cut(s) 639
Bbv12I GWGCWC 1 cut(s) 1056
BbvI GCAGC 3 cut(s) 109, 451, 1304
BccI CCATC 6 cut(s) 200, 335, 346, 765, 854, 1187
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 763
BcoDI GTCTC 4 cut(s) 605, 751, 1214, 1372
BcuI ACTAGT 1 cut(s) 562
BfaI CTAG 5 cut(s) 563, 932, 951, 963, 1020
BfuAI ACCTGC 2 cut(s) 577, 1154
BfuI GTATCC 1 cut(s) 763
BisI GCNGC 3 cut(s) 123, 465, 1293
BlpI GCTNAGC 1 cut(s) 1245
BlsI GCNGC 3 cut(s) 124, 466, 1294
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 1 cut(s) 1166
BmgBI CACGTC 1 cut(s) 1280
BmgT120I GGNCC 1 cut(s) 1166
BmiI GGNNCC 1 cut(s) 1168
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 1231, 1328
BoxI GACNNNNGTC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 1043, 1075
Bpu1102I GCTNAGC 1 cut(s) 1245
BpuEI CTTGAG 2 cut(s) 113, 152
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 751
BsaJI CCNNGG 3 cut(s) 226, 265, 1297
Bsc4I CCNNNNNNNGG 1 cut(s) 586
Bse1I ACTGG 2 cut(s) 111, 928
Bse3DI GCAATG 2 cut(s) 363, 1150
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 3 cut(s) 226, 265, 1297
BseGI GGATG 3 cut(s) 16, 22, 1319
BseLI CCNNNNNNNGG 1 cut(s) 586
BseMI GCAATG 2 cut(s) 363, 1150
BseMII CTCAG 3 cut(s) 484, 600, 1236
BseNI ACTGG 2 cut(s) 111, 928
BseRI GAGGAG 1 cut(s) 1220
BseXI GCAGC 3 cut(s) 109, 451, 1304
BseYI CCCAGC 1 cut(s) 1169
BsgI GTGCAG 2 cut(s) 450, 605
BshFI GGCC 2 cut(s) 332, 895
BsiHKAI GWGCWC 1 cut(s) 1056
BslFI GGGAC 2 cut(s) 439, 1152
BslI CCNNNNNNNGG 1 cut(s) 586
BsmAI GTCTC 4 cut(s) 605, 751, 1214, 1372
BsmFI GGGAC 2 cut(s) 439, 1152
BsmI GAATGC 2 cut(s) 81, 848
BsnI GGCC 2 cut(s) 332, 895
Bso31I GGTCTC 1 cut(s) 751
Bsp1286I GDGCHC 2 cut(s) 639, 1056
Bsp143I GATC 4 cut(s) 781, 970, 1005, 1111
Bsp1720I GCTNAGC 1 cut(s) 1245
BspACI CCGC 3 cut(s) 60, 99, 869
BspANI GGCC 2 cut(s) 332, 895
BspCNI CTCAG 3 cut(s) 483, 601, 1237
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 1168
BspMI ACCTGC 2 cut(s) 577, 1154
BspPI GGATC 2 cut(s) 978, 1013
BspQI GCTCTTC 1 cut(s) 495
BspTNI GGTCTC 1 cut(s) 751
BsrDI GCAATG 2 cut(s) 363, 1150
BsrI ACTGG 2 cut(s) 111, 928
BssECI CCNNGG 3 cut(s) 226, 265, 1297
BssMI GATC 4 cut(s) 781, 970, 1005, 1111
BssNI GRCGYC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 5 cut(s) 266, 349, 616, 1225, 1364
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 5 cut(s) 405, 470, 609, 987, 1245
BstDSI CCRYGG 2 cut(s) 265, 1297
BstEII GGTNACC 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 584
BstF5I GGATG 3 cut(s) 16, 22, 1319
BstKTI GATC 4 cut(s) 784, 973, 1008, 1114
BstMAI GTCTC 4 cut(s) 605, 751, 1214, 1372
BstMBI GATC 4 cut(s) 781, 970, 1005, 1111
BstMWI GCNNNNNNNGC 3 cut(s) 592, 1123, 1289
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 3 cut(s) 832, 1106, 1158
BstPAI GACNNNNGTC 1 cut(s) 257
BstPI GGTNACC 1 cut(s) 718
BstSCI CCNGG 1 cut(s) 568
BstV1I GCAGC 3 cut(s) 109, 451, 1304
BsuI GTATCC 1 cut(s) 763
BsuRI GGCC 2 cut(s) 332, 895
BtgI CCRYGG 2 cut(s) 265, 1297
BtrI CACGTC 1 cut(s) 1280
BtsCI GGATG 3 cut(s) 16, 22, 1319
BtsI GCAGTG 2 cut(s) 1097, 1180
BtsIMutI CAGTG 2 cut(s) 1097, 1180
BveI ACCTGC 2 cut(s) 577, 1154
Cac8I GCNNGC 1 cut(s) 893
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 1 cut(s) 1166
CseI GACGC 1 cut(s) 200
Csp6I GTAC 5 cut(s) 95, 223, 345, 566, 775
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviQI GTAC 5 cut(s) 95, 223, 345, 566, 775
DdeI CTNAG 5 cut(s) 405, 470, 609, 987, 1245
DpnI GATC 4 cut(s) 783, 972, 1007, 1113
DpnII GATC 4 cut(s) 781, 970, 1005, 1111
DrdI GACNNNNNNGTC 1 cut(s) 716
DseDI GACNNNNNNGTC 1 cut(s) 716
EaeI YGGCCR 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco147I AGGCCT 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 639
Eco31I GGTCTC 1 cut(s) 751
Eco47I GGWCC 1 cut(s) 1166
Eco57I CTGAAG 1 cut(s) 1062
Eco91I GGTNACC 1 cut(s) 718
EcoNI CCTNNNNNAGG 1 cut(s) 584
EcoO109I RGGNCCY 1 cut(s) 1166
EcoO65I GGTNACC 1 cut(s) 718
EcoRII CCWGG 1 cut(s) 568
EcoT38I GRGCYC 1 cut(s) 639
FaqI GGGAC 2 cut(s) 439, 1152
FauI CCCGC 1 cut(s) 106
Fnu4HI GCNGC 3 cut(s) 123, 465, 1293
FokI GGATG 3 cut(s) 23, 29, 1306
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 3 cut(s) 123, 465, 1293
FspBI CTAG 5 cut(s) 563, 932, 951, 963, 1020
GluI GCNGC 3 cut(s) 123, 465, 1293
GsaI CCCAGC 1 cut(s) 1173
HaeIII GGCC 2 cut(s) 332, 895
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 192
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 6 cut(s) 270, 311, 667, 822, 1016, 1094
HphI GGTGA 4 cut(s) 361, 601, 712, 1282
Hpy166II GTNNAC 5 cut(s) 262, 874, 903, 960, 1178
Hpy188I TCNGA 3 cut(s) 316, 473, 1027
Hpy188III TCNNGA 7 cut(s) 86, 608, 785, 932, 974, 1323, 1375
Hpy8I GTNNAC 5 cut(s) 262, 874, 903, 960, 1178
Hpy99I CGWCG 2 cut(s) 194, 1281
HpyAV CCTTC 5 cut(s) 484, 709, 906, 961, 992
HpyCH4III ACNGT 5 cut(s) 266, 349, 616, 1225, 1364
HpyCH4IV ACGT 2 cut(s) 221, 1279
HpyF10VI GCNNNNNNNGC 3 cut(s) 592, 1123, 1289
HpyF3I CTNAG 5 cut(s) 405, 470, 609, 987, 1245
HpySE526I ACGT 2 cut(s) 221, 1279
Hsp92I GRCGYC 1 cut(s) 192
Kzo9I GATC 4 cut(s) 781, 970, 1005, 1111
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 1 cut(s) 112
Lsp1109I GCAGC 3 cut(s) 109, 451, 1304
LweI GCATC 2 cut(s) 1231, 1328
MaeI CTAG 5 cut(s) 563, 932, 951, 963, 1020
MaeII ACGT 2 cut(s) 221, 1279
MaeIII GTNAC 5 cut(s) 536, 558, 674, 718, 1285
MalI GATC 4 cut(s) 783, 972, 1007, 1113
MboI GATC 4 cut(s) 781, 970, 1005, 1111
MboII GAAGA 6 cut(s) 350, 512, 989, 1046, 1055, 1202
MfeI CAATTG 2 cut(s) 439, 596
MhlI GDGCHC 2 cut(s) 639, 1056
MlsI TGGCCA 1 cut(s) 332
MluCI AATT 8 cut(s) 246, 362, 439, 476, 596, 686, 981, 1382
MluNI TGGCCA 1 cut(s) 332
MlyI GAGTC 2 cut(s) 279, 320
MmeI TCCRAC 1 cut(s) 283
Mox20I TGGCCA 1 cut(s) 332
MscI TGGCCA 1 cut(s) 332
MseI TTAA 8 cut(s) 56, 249, 419, 690, 804, 1067, 1227, 1385
MslI CAYNNNNRTG 2 cut(s) 762, 1061
Msp20I TGGCCA 1 cut(s) 332
MspA1I CMGCKG 4 cut(s) 62, 101, 851, 869
MspR9I CCNGG 1 cut(s) 570
MunI CAATTG 2 cut(s) 439, 596
Mva1269I GAATGC 2 cut(s) 81, 848
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 592, 1123, 1289
NdeII GATC 4 cut(s) 781, 970, 1005, 1111
NlaIV GGNNCC 1 cut(s) 1168
NmuCI GTSAC 3 cut(s) 558, 674, 718
NspI RCATGY 3 cut(s) 832, 1106, 1158
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 577
PceI AGGCCT 1 cut(s) 895
PciI ACATGT 2 cut(s) 828, 1154
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 2 cut(s) 81, 848
PfeI GAWTC 4 cut(s) 667, 822, 1016, 1094
PkrI GCNGC 3 cut(s) 124, 466, 1294
PleI GAGTC 2 cut(s) 278, 319
PpsI GAGTC 2 cut(s) 278, 319
PpuMI RGGWCCY 1 cut(s) 1166
PscI ACATGT 2 cut(s) 828, 1154
PshAI GACNNNNGTC 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 1166
Psp6I CCWGG 1 cut(s) 568
PspEI GGTNACC 1 cut(s) 718
PspFI CCCAGC 1 cut(s) 1169
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 1 cut(s) 1168
PspPI GGNCC 1 cut(s) 1166
PspPPI RGGWCCY 1 cut(s) 1166
PvuII CAGCTG 1 cut(s) 851
RsaI GTAC 5 cut(s) 96, 224, 346, 567, 776
RsaNI GTAC 5 cut(s) 95, 223, 345, 566, 775
RseI CAYNNNNRTG 2 cut(s) 762, 1061
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 8 cut(s) 56, 249, 419, 690, 804, 1067, 1227, 1385
SatI GCNGC 3 cut(s) 123, 465, 1293
Sau3AI GATC 4 cut(s) 781, 970, 1005, 1111
Sau96I GGNCC 1 cut(s) 1166
SchI GAGTC 2 cut(s) 279, 320
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 2 cut(s) 639, 1056
SfaNI GCATC 2 cut(s) 1231, 1328
SinI GGWCC 1 cut(s) 1166
SmiMI CAYNNNNRTG 2 cut(s) 762, 1061
SmlI CTYRAG 2 cut(s) 128, 167
SmoI CTYRAG 2 cut(s) 128, 167
SpeI ACTAGT 1 cut(s) 562
Sse9I AATT 8 cut(s) 246, 362, 439, 476, 596, 686, 981, 1382
SseBI AGGCCT 1 cut(s) 895
SsiI CCGC 3 cut(s) 60, 99, 869
SspMI CTAG 5 cut(s) 563, 932, 951, 963, 1020
StuI AGGCCT 1 cut(s) 895
StyD4I CCNGG 1 cut(s) 568
TaaI ACNGT 5 cut(s) 266, 349, 616, 1225, 1364
TaiI ACGT 2 cut(s) 224, 1282
TaqI TCGA 1 cut(s) 66
TasI AATT 8 cut(s) 246, 362, 439, 476, 596, 686, 981, 1382
TatI WGTACW 1 cut(s) 774
TfiI GAWTC 4 cut(s) 667, 822, 1016, 1094
Tru1I TTAA 8 cut(s) 56, 249, 419, 690, 804, 1067, 1227, 1385
Tru9I TTAA 8 cut(s) 56, 249, 419, 690, 804, 1067, 1227, 1385
TscAI CASTG 2 cut(s) 1104, 1180
TseFI GTSAC 3 cut(s) 558, 674, 718
TseI GCWGC 3 cut(s) 122, 464, 1292
Tsp45I GTSAC 3 cut(s) 558, 674, 718
TspRI CASTG 2 cut(s) 1104, 1180
VpaK11BI GGWCC 1 cut(s) 1166
XagI CCTNNNNNAGG 1 cut(s) 584
XapI RAATTY 2 cut(s) 476, 686
XbaI TCTAGA 1 cut(s) 931
XceI RCATGY 3 cut(s) 832, 1106, 1158
XcmI CCANNNNNNNNNTGG 1 cut(s) 299
XspI CTAG 5 cut(s) 563, 932, 951, 963, 1020
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.