Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

21423344 .. 21424165

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATTCTAGGGTTTTGGTGTTGATGAGCATGCTTGTTCTTGCTCTGGCTAAAGAATATCCATACGGGCTTGAATATCCAGTATTCGATGATGAGTTTCAGAATAATGTCAATAACCAGTTTCAGTTTAACTATGATATTCCCACAACCCCATTCCCAAAATCTCCCCCTCCTTCTCCACTTATCATTTCTCCCTCGGCTTCCTCTCCCTCTCCTATGACGTCTCCTCCGATTCCTAGCAGCTCCCCCTCACCCATCATTTCTCCCTTGGCTTCCTCTCCCTCTCCTATGACGTCTCCTTCGATTCCTAGCAGCTCCCCCTCACCCTCCGCCTCACAACAGAACTCCTACCGACGACCAAAACTACAAAGTGGTATCATGAAATGTAGTAAAAAATGTGTTAATGCATGTTCACCCTCCAAAAGCATTCTTCCTCCTCTTGTTTCCCCTCCTATATTGTACCCTTCTTGCCTCACCGGCTGTGTTTCTCATTGCACTCGGGCCACTCAGCTTCCGGAGACACCCCTTGTCCCCACTACTAAGGTTGTTGATGGTTGCACTCGTTACTGTGCCACCTCCATTGTTGCCAAATTCATCGCCGCTAAGCCTGATGAACGACCACATCGCGTTAATGTTCAAGACGACGTGCCTAAGTGCTTTGAGATCTGCTTTTACGAGAAGATGTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005048 GO:0005488 GO:0005515 GO:0006464 GO:0006807 GO:0008139 GO:0008150 GO:0008152 GO:0008270 GO:0009636 GO:0009987 GO:0010033 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0023051 GO:0032182 GO:0032446 GO:0033218 GO:0036211 GO:0042221 GO:0042277 GO:0042493 GO:0043130 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045471 GO:0046677 GO:0046872 GO:0046914 GO:0050789 GO:0050896 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0097305 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko02020 ko04014 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map02020 map04014 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

BRAP2 zf-RING_2 zf-UBP

Protein Analysis

230

Amino Acids

25.0

Weight (kDa)

8.5

Isoelectric Point (pI)

88.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	224, 296
AccII	CGCG	1 cut(s)	627
AccIII	TCCGGA	1 cut(s)	514
AciI	CCGC	2 cut(s)	330, 600
AcsI	RAATTY	1 cut(s)	590
AcyI	GRCGYC	2 cut(s)	221, 293
AfaI	GTAC	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	74, 638
AjiI	CACGTC	1 cut(s)	646
AluBI	AGCT	3 cut(s)	243, 315, 511
AluI	AGCT	3 cut(s)	243, 315, 511
Alw26I	GTCTC	3 cut(s)	228, 300, 512
Ama87I	CYCGRG	1 cut(s)	498
Aor13HI	TCCGGA	1 cut(s)	514
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	2 cut(s)	240, 312
ApoI	RAATTY	1 cut(s)	590
ArsI	GACNNNNNNTTYG	2 cut(s)	283, 315
AspS9I	GGNCC	1 cut(s)	501
AsuHPI	GGTGA	4 cut(s)	243, 315, 405, 466
AvaI	CYCGRG	1 cut(s)	498
BbvI	GCAGC	2 cut(s)	252, 324
BccI	CCATC	2 cut(s)	263, 545
BcoDI	GTCTC	3 cut(s)	228, 300, 512
BfaI	CTAG	3 cut(s)	9, 237, 309
BglI	GCCNNNNNGGC	1 cut(s)	477
BglII	AGATCT	1 cut(s)	663
BisI	GCNGC	3 cut(s)	241, 313, 600
BlpI	GCTNAGC	1 cut(s)	603
BlsI	GCNGC	3 cut(s)	242, 314, 601
BmeT110I	CYCGRG	1 cut(s)	498
BmgBI	CACGTC	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	501
Bpu1102I	GCTNAGC	1 cut(s)	603
BsaHI	GRCGYC	2 cut(s)	221, 293
BsaJI	CCNNGG	2 cut(s)	195, 267
BsaWI	WCCGGW	1 cut(s)	514
BsaXI	ACNNNNNCTCC	2 cut(s)	211, 241
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	2 cut(s)	80, 118
Bse3DI	GCAATG	1 cut(s)	490
BseAI	TCCGGA	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	195, 267
BseMI	GCAATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	80, 118
BseRI	GAGGAG	2 cut(s)	216, 426
BseXI	GCAGC	2 cut(s)	252, 324
Bsh1236I	CGCG	1 cut(s)	627
BshFI	GGCC	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	477, 515
BslFI	GGGAC	1 cut(s)	515
BsmAI	GTCTC	3 cut(s)	228, 300, 512
BsmBI	CGTCTC	2 cut(s)	228, 300
BsmFI	GGGAC	1 cut(s)	515
BsmI	GAATGC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	503
BsoBI	CYCGRG	1 cut(s)	498
Bsp13I	TCCGGA	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	663
Bsp1720I	GCTNAGC	1 cut(s)	603
BspACI	CCGC	2 cut(s)	330, 600
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	520
BspEI	TCCGGA	1 cut(s)	514
BspFNI	CGCG	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	378
BsrDI	GCAATG	1 cut(s)	490
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	80, 118
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	2 cut(s)	195, 267
BssMI	GATC	1 cut(s)	663
BssNI	GRCGYC	2 cut(s)	221, 293
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	569
BstACI	GRCGYC	2 cut(s)	221, 293
BstC8I	GCNNGC	1 cut(s)	32
BstDEI	CTNAG	4 cut(s)	507, 540, 603, 651
BstFNI	CGCG	1 cut(s)	627
BstKTI	GATC	1 cut(s)	666
BstMAI	GTCTC	3 cut(s)	228, 300, 512
BstMBI	GATC	1 cut(s)	663
BstMWI	GCNNNNNNNGC	1 cut(s)	477
BstNSI	RCATGY	2 cut(s)	34, 411
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	252, 324
BstX2I	RGATCY	1 cut(s)	663
BstYI	RGATCY	1 cut(s)	663
BsuRI	GGCC	1 cut(s)	503
BtgZI	GCGATG	2 cut(s)	580, 608
BtrI	CACGTC	1 cut(s)	646
Cac8I	GCNNGC	1 cut(s)	32
CciI	TCATGA	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	1 cut(s)	501
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	3 cut(s)	31, 379, 408
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	4 cut(s)	507, 540, 603, 651
DpnI	GATC	1 cut(s)	665
DpnII	GATC	1 cut(s)	663
EciI	GGCGGA	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	267
Eco88I	CYCGRG	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	409
ErhI	CCWWGG	1 cut(s)	267
Esp3I	CGTCTC	2 cut(s)	228, 300
FaeI	CATG	3 cut(s)	34, 382, 411
FaiI	YATR	9 cut(s)	32, 64, 135, 218, 290, 380, 409, 455, 687
FaqI	GGGAC	1 cut(s)	515
FatI	CATG	3 cut(s)	30, 378, 407
Fnu4HI	GCNGC	3 cut(s)	241, 313, 600
Fsp4HI	GCNGC	3 cut(s)	241, 313, 600
FspBI	CTAG	3 cut(s)	9, 237, 309
GluI	GCNGC	3 cut(s)	241, 313, 600
HaeIII	GGCC	1 cut(s)	503
HapII	CCGG	2 cut(s)	477, 515
Hin1I	GRCGYC	2 cut(s)	221, 293
Hin1II	CATG	3 cut(s)	34, 382, 411
HinfI	GANTC	3 cut(s)	5, 232, 304
HpaII	CCGG	2 cut(s)	477, 515
HphI	GGTGA	4 cut(s)	243, 315, 405, 466
Hpy166II	GTNNAC	1 cut(s)	413
Hpy188I	TCNGA	2 cut(s)	102, 231
Hpy188III	TCNNGA	3 cut(s)	379, 515, 638
Hpy8I	GTNNAC	1 cut(s)	413
Hpy99I	CGWCG	2 cut(s)	357, 647
HpyAV	CCTTC	3 cut(s)	183, 309, 474
HpyCH4III	ACNGT	1 cut(s)	569
HpyCH4IV	ACGT	3 cut(s)	221, 293, 645
HpyCH4V	TGCA	3 cut(s)	407, 495, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	477
HpyF3I	CTNAG	4 cut(s)	507, 540, 603, 651
HpySE526I	ACGT	3 cut(s)	221, 293, 645
Hsp92I	GRCGYC	2 cut(s)	221, 293
Hsp92II	CATG	3 cut(s)	34, 382, 411
Kpn2I	TCCGGA	1 cut(s)	514
Kzo9I	GATC	1 cut(s)	663
LmnI	GCTCC	2 cut(s)	248, 320
LpnPI	CCDG	6 cut(s)	32, 93, 131, 490, 528, 621
Lsp1109I	GCAGC	2 cut(s)	252, 324
MaeI	CTAG	3 cut(s)	9, 237, 309
MaeII	ACGT	3 cut(s)	221, 293, 645
MaeIII	GTNAC	1 cut(s)	563
MalI	GATC	1 cut(s)	665
MboI	GATC	1 cut(s)	663
MboII	GAAGA	2 cut(s)	422, 691
MflI	RGATCY	1 cut(s)	663
MluCI	AATT	2 cut(s)	590, 688
Mph1103I	ATGCAT	1 cut(s)	409
MroI	TCCGGA	1 cut(s)	514
MseI	TTAA	4 cut(s)	129, 402, 630, 691
MspI	CCGG	2 cut(s)	477, 515
Mva1269I	GAATGC	1 cut(s)	426
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	1 cut(s)	477
NdeII	GATC	1 cut(s)	663
NlaIII	CATG	3 cut(s)	34, 382, 411
NmeAIII	GCCGAG	1 cut(s)	176
NsiI	ATGCAT	1 cut(s)	409
NspI	RCATGY	2 cut(s)	34, 411
PaeI	GCATGC	1 cut(s)	34
PagI	TCATGA	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	2 cut(s)	227, 299
PctI	GAATGC	1 cut(s)	426
PfeI	GAWTC	3 cut(s)	5, 232, 304
PkrI	GCNGC	3 cut(s)	242, 314, 601
PspPI	GGNCC	1 cut(s)	501
PsuI	RGATCY	1 cut(s)	663
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	4 cut(s)	129, 402, 630, 691
SatI	GCNGC	3 cut(s)	241, 313, 600
Sau3AI	GATC	1 cut(s)	663
Sau96I	GGNCC	1 cut(s)	501
SetI	ASST	8 cut(s)	224, 245, 296, 317, 513, 546, 578, 648
SphI	GCATGC	1 cut(s)	34
Sse9I	AATT	2 cut(s)	590, 688
SsiI	CCGC	2 cut(s)	330, 600
SspMI	CTAG	3 cut(s)	9, 237, 309
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	569
TaiI	ACGT	3 cut(s)	224, 296, 648
TaqI	TCGA	2 cut(s)	87, 302
TasI	AATT	2 cut(s)	590, 688
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	3 cut(s)	5, 232, 304
Tru1I	TTAA	4 cut(s)	129, 402, 630, 691
Tru9I	TTAA	4 cut(s)	129, 402, 630, 691
TseI	GCWGC	2 cut(s)	240, 312
TspDTI	ATGAA	3 cut(s)	395, 583, 627
XapI	RAATTY	1 cut(s)	590
XceI	RCATGY	2 cut(s)	34, 411
XspI	CTAG	3 cut(s)	9, 237, 309
ZraI	GACGTC	2 cut(s)	222, 294
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.