Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003133.1

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

152519 .. 154088

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003133.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgattgatatctgtgtgatgaccggcgaaatctgtgtgatgattagttggacaattgatatctgtgtgatgacccgcagaatctgtgtgatgatcagtaggatgaaggatctatctctctctctcgacacctccctcacgctcctcgctgccaccaactcctccgacccctccccttccttcgagtccacctccgccttcctctcctgcttctccatctccaagtcctccgtcaactcccaactcgcccagtgccgactcaccgatcccactcacctcaaacccttcctcgaccaaatctccgcctccatctccgacctcgagaagctcgtcaccaagaactcctacttcttaccctcgtacaaagtccaatcgtcgctgaaaacgatctccgatctgagctctgtctccttcgttcttgtgattatgactattttttttttggacttcggaaccgactccggccatcaaattcaacccctcgacggaggtgatgccatcggaggtggagaaaggagaggcgaagtcatcgtcatcgtcatcgtcaacgacgtcgttttagggagaggagcacaggttgccttgggcatcatcttggtcgagggccatggtggtggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

206

Amino Acids

22.09

Weight (kDa)

4.92

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	555
AciI	CCGC	3 cut(s)	76, 195, 303
AclWI	GGATC	2 cut(s)	117, 260
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	471
AcyI	GRCGYC	1 cut(s)	552
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	1 cut(s)	485
AgsI	TTSAA	1 cut(s)	476
AluBI	AGCT	2 cut(s)	328, 402
AluI	AGCT	2 cut(s)	328, 402
Alw21I	GWGCWC	2 cut(s)	404, 574
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	2 cut(s)	117, 260
AlwNI	CAGNNNCTG	1 cut(s)	84
Ama87I	CYCGRG	1 cut(s)	320
AoxI	GGCC	2 cut(s)	463, 604
ApeKI	GCWGC	1 cut(s)	149
ApoI	RAATTY	1 cut(s)	471
ArsI	GACNNNNNNTTYG	2 cut(s)	516, 548
AspS9I	GGNCC	1 cut(s)	604
AsuHPI	GGTGA	4 cut(s)	253, 266, 325, 503
AvaI	CYCGRG	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	404
Bbv12I	GWGCWC	2 cut(s)	404, 574
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	4 cut(s)	224, 317, 474, 506
BclI	TGATCA	1 cut(s)	93
BcoDI	GTCTC	1 cut(s)	412
BisI	GCNGC	1 cut(s)	150
BlsI	GCNGC	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	604
BmiI	GGNNCC	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	244
BmsI	GCATC	2 cut(s)	484, 597
BmuI	ACTGGG	1 cut(s)	244
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	1 cut(s)	552
BsaJI	CCNNGG	2 cut(s)	582, 607
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 561, 591
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	1 cut(s)	250
Bse8I	GATNNNNATC	1 cut(s)	8
BseDI	CCNNGG	2 cut(s)	582, 607
BseGI	GGATG	1 cut(s)	108
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseMII	CTCAG	1 cut(s)	389
BseNI	ACTGG	1 cut(s)	250
BseRI	GAGGAG	3 cut(s)	134, 151, 582
BseXI	GCAGC	1 cut(s)	136
BshFI	GGCC	2 cut(s)	465, 606
BsiHKAI	GWGCWC	2 cut(s)	404, 574
BsiHKCI	CYCGRG	1 cut(s)	320
BsiSI	CCGG	2 cut(s)	24, 462
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	465, 606
BsoBI	CYCGRG	1 cut(s)	320
Bsp1286I	GDGCHC	2 cut(s)	404, 574
Bsp143I	GATC	5 cut(s)	93, 109, 265, 387, 394
Bsp19I	CCATGG	1 cut(s)	607
BspACI	CCGC	3 cut(s)	76, 195, 303
BspANI	GGCC	2 cut(s)	465, 606
BspCNI	CTCAG	1 cut(s)	390
BspLI	GGNNCC	1 cut(s)	454
BspPI	GGATC	2 cut(s)	117, 260
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	250
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	582, 607
BssMI	GATC	5 cut(s)	93, 109, 265, 387, 394
BssNI	GRCGYC	1 cut(s)	552
BssT1I	CCWWGG	2 cut(s)	582, 607
BstACI	GRCGYC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstDEI	CTNAG	1 cut(s)	398
BstDSI	CCRYGG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	5 cut(s)	96, 112, 268, 390, 397
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	5 cut(s)	93, 109, 265, 387, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	578
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	109
BstXI	CCANNNNNNTGG	1 cut(s)	614
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	465, 606
BtgI	CCRYGG	1 cut(s)	607
BtsCI	GGATG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	257
CaiI	CAGNNNCTG	1 cut(s)	84
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	1 cut(s)	604
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	608
CviJI	RGCY	4 cut(s)	328, 402, 465, 606
CviKI_1	RGCY	4 cut(s)	328, 402, 465, 606
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	1 cut(s)	398
DpnI	GATC	5 cut(s)	95, 111, 267, 389, 396
DpnII	GATC	5 cut(s)	93, 109, 265, 387, 394
EaeI	YGGCCR	1 cut(s)	463
EciI	GGCGGA	2 cut(s)	184, 292
Ecl136II	GAGCTC	1 cut(s)	402
Eco130I	CCWWGG	2 cut(s)	582, 607
Eco24I	GRGCYC	1 cut(s)	404
Eco32I	GATATC	2 cut(s)	10, 61
Eco53kI	GAGCTC	1 cut(s)	402
Eco88I	CYCGRG	1 cut(s)	320
EcoICRI	GAGCTC	1 cut(s)	402
EcoRV	GATATC	2 cut(s)	10, 61
EcoT14I	CCWWGG	2 cut(s)	582, 607
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	2 cut(s)	582, 607
FaeI	CATG	1 cut(s)	611
FaiI	YATR	2 cut(s)	428, 609
FatI	CATG	1 cut(s)	607
FauI	CCCGC	1 cut(s)	83
FbaI	TGATCA	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	150
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	1 cut(s)	150
GluI	GCNGC	1 cut(s)	150
HaeIII	GGCC	2 cut(s)	465, 606
HapII	CCGG	2 cut(s)	24, 462
Hin1I	GRCGYC	1 cut(s)	552
Hin1II	CATG	1 cut(s)	611
HincII	GTYRAC	2 cut(s)	235, 547
HindII	GTYRAC	2 cut(s)	235, 547
HinfI	GANTC	4 cut(s)	81, 185, 258, 458
HpaII	CCGG	2 cut(s)	24, 462
HphI	GGTGA	4 cut(s)	253, 266, 325, 503
Hpy166II	GTNNAC	3 cut(s)	189, 235, 547
Hpy188I	TCNGA	6 cut(s)	166, 316, 394, 399, 452, 503
Hpy188III	TCNNGA	2 cut(s)	125, 322
Hpy8I	GTNNAC	3 cut(s)	189, 235, 547
Hpy99I	CGWCG	4 cut(s)	379, 488, 554, 557
HpyAV	CCTTC	6 cut(s)	100, 186, 190, 208, 295, 421
HpyCH4IV	ACGT	1 cut(s)	552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	578
HpyF3I	CTNAG	1 cut(s)	398
HpySE526I	ACGT	1 cut(s)	552
Hsp92I	GRCGYC	1 cut(s)	552
Hsp92II	CATG	1 cut(s)	611
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	93, 109, 265, 387, 394
LmnI	GCTCC	2 cut(s)	147, 569
LpnPI	CCDG	5 cut(s)	37, 220, 263, 475, 560
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	484, 597
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	5 cut(s)	95, 111, 267, 389, 396
MboI	GATC	5 cut(s)	93, 109, 265, 387, 394
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	404, 574
MluCI	AATT	2 cut(s)	54, 471
MlyI	GAGTC	3 cut(s)	194, 252, 452
MmeI	TCCRAC	3 cut(s)	29, 189, 339
MslI	CAYNNNNRTG	1 cut(s)	612
MspI	CCGG	2 cut(s)	24, 462
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	578
NcoI	CCATGG	1 cut(s)	607
NdeII	GATC	5 cut(s)	93, 109, 265, 387, 394
NlaIII	CATG	1 cut(s)	611
NlaIV	GGNNCC	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	331
PaeR7I	CTCGAG	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	3 cut(s)	327, 383, 549
PfeI	GAWTC	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	151
PleI	GAGTC	3 cut(s)	193, 252, 452
PpsI	GAGTC	3 cut(s)	193, 252, 452
Psp124BI	GAGCTC	1 cut(s)	404
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	604
PstNI	CAGNNNCTG	1 cut(s)	84
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
RseI	CAYNNNNRTG	1 cut(s)	612
SacI	GAGCTC	1 cut(s)	404
SatI	GCNGC	1 cut(s)	150
Sau3AI	GATC	5 cut(s)	93, 109, 265, 387, 394
Sau96I	GGNCC	1 cut(s)	604
SchI	GAGTC	3 cut(s)	194, 252, 452
SduI	GDGCHC	2 cut(s)	404, 574
SfaNI	GCATC	2 cut(s)	484, 597
Sfr274I	CTCGAG	1 cut(s)	320
SlaI	CTCGAG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	612
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	2 cut(s)	54, 471
SsiI	CCGC	3 cut(s)	76, 195, 303
SstI	GAGCTC	1 cut(s)	404
StyI	CCWWGG	2 cut(s)	582, 607
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	6 cut(s)	126, 183, 291, 321, 483, 600
TasI	AATT	2 cut(s)	54, 471
TfiI	GAWTC	1 cut(s)	81
TscAI	CASTG	1 cut(s)	257
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	149
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	119
TspGWI	ACGGA	2 cut(s)	220, 501
TspRI	CASTG	1 cut(s)	257
XapI	RAATTY	1 cut(s)	471
XhoI	CTCGAG	1 cut(s)	320
ZraI	GACGTC	1 cut(s)	553

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.