Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

46813932 .. 46818102

Gene Structure 4171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG252600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTGCATGAGCCGTAGAAACAAGATCTGGAGGAACCACGGTATCCTTCCAAGGTCCAATGCCTACCACATAATCCTCAATGAAGCTAAGGCAACAGATCGAAGGGATTCCGCTGCGAAAAGAAGAGTAGACATGAGGAAGGGGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCGTCCCGGGTTTAAAGATGAAGTTCTTATCAACTTCATTCATGGTCTTTTGGATGTAAAGGTGCTTACTCTTGAGGAGCCTGAATGTGGTCTTACCATCGTCAAGCTAACGCATGTGGATTTTCCTGAAGAAGACAGGTTTAGAAGACCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

PWI

Protein Analysis

114

Amino Acids

13.34

Weight (kDa)

9.45

Isoelectric Point (pI)

71.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	129
AciI	CCGC	1 cut(s)	111
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	86, 295
AluI	AGCT	2 cut(s)	86, 295
Ama87I	CYCGRG	1 cut(s)	194
ApeKI	GCWGC	1 cut(s)	113
Asp700I	GAANNNNTTC	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	2 cut(s)	195, 196
AvaI	CYCGRG	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	54
BaeI	ACNNNNGTAYC	2 cut(s)	25, 58
BbsI	GAAGAC	2 cut(s)	327, 340
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	293
BciVI	GTATCC	1 cut(s)	53
BcnI	CCSGG	2 cut(s)	195, 196
BfuI	GTATCC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	24
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	195, 196
Bme18I	GGWCC	1 cut(s)	54
BmeT110I	CYCGRG	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	35, 267
BmrFI	CCNGG	2 cut(s)	195, 196
BmsI	GCATC	1 cut(s)	169
BpiI	GAAGAC	2 cut(s)	327, 340
BpmI	CTGGAG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	195, 196
BsaJI	CCNNGG	3 cut(s)	37, 50, 194
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
BseDI	CCNNGG	3 cut(s)	37, 50, 194
BseGI	GGATG	2 cut(s)	160, 247
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMII	CTCAG	1 cut(s)	177
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	100
BsiHKCI	CYCGRG	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	24, 97
BspACI	CCGC	1 cut(s)	111
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	35, 267
BssECI	CCNNGG	3 cut(s)	37, 50, 194
BssMI	GATC	2 cut(s)	24, 97
BssT1I	CCWWGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	87, 186
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	160, 247
BstKTI	GATC	2 cut(s)	27, 100
BstMBI	GATC	2 cut(s)	24, 97
BstNSI	RCATGY	1 cut(s)	305
BstSCI	CCNGG	2 cut(s)	193, 194
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	2 cut(s)	327, 340
BstX2I	RGATCY	1 cut(s)	24
BstYI	RGATCY	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	53
BtgI	CCRYGG	1 cut(s)	37
BtsCI	GGATG	2 cut(s)	160, 247
Cfr13I	GGNCC	1 cut(s)	54
Cfr9I	CCCGGG	1 cut(s)	194
CseI	GACGC	1 cut(s)	179
Csp6I	GTAC	1 cut(s)	168
CviAII	CATG	5 cut(s)	7, 133, 165, 230, 302
CviJI	RGCY	4 cut(s)	12, 86, 268, 295
CviKI_1	RGCY	4 cut(s)	12, 86, 268, 295
CviQI	GTAC	1 cut(s)	168
DdeI	CTNAG	2 cut(s)	87, 186
DpnI	GATC	2 cut(s)	26, 99
DpnII	GATC	2 cut(s)	24, 97
DraI	TTTAAA	1 cut(s)	202
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	336
Eco88I	CYCGRG	1 cut(s)	194
EcoT14I	CCWWGG	1 cut(s)	50
ErhI	CCWWGG	1 cut(s)	50
FaeI	CATG	5 cut(s)	10, 136, 168, 233, 305
FaiI	YATR	8 cut(s)	8, 71, 134, 149, 166, 231, 303, 343
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	5 cut(s)	6, 132, 164, 229, 301
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	2 cut(s)	147, 254
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
GsuI	CTGGAG	1 cut(s)	49
HapII	CCGG	1 cut(s)	195
HgaI	GACGC	1 cut(s)	179
Hin1II	CATG	5 cut(s)	10, 136, 168, 233, 305
HinfI	GANTC	1 cut(s)	107
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188III	TCNNGA	3 cut(s)	28, 260, 314
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	3 cut(s)	56, 96, 133
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4V	TGCA	2 cut(s)	6, 160
HpyF3I	CTNAG	2 cut(s)	87, 186
Hsp92II	CATG	5 cut(s)	10, 136, 168, 233, 305
Kzo9I	GATC	2 cut(s)	24, 97
LmnI	GCTCC	1 cut(s)	265
LpnPI	CCDG	5 cut(s)	13, 208, 282, 310, 327
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	169
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	26, 99
MboI	GATC	2 cut(s)	24, 97
MboII	GAAGA	4 cut(s)	135, 329, 332, 345
MflI	RGATCY	1 cut(s)	24
MnlI	CCTC	4 cut(s)	24, 86, 129, 256
MroXI	GAANNNNTTC	1 cut(s)	106
MseI	TTAA	1 cut(s)	201
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	195, 196
NciI	CCSGG	2 cut(s)	195, 196
NdeII	GATC	2 cut(s)	24, 97
NlaIII	CATG	5 cut(s)	10, 136, 168, 233, 305
NlaIV	GGNNCC	2 cut(s)	35, 267
NspI	RCATGY	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	106
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	1 cut(s)	115
PspN4I	GGNNCC	2 cut(s)	35, 267
PspPI	GGNCC	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	24
RsaI	GTAC	1 cut(s)	169
RsaNI	GTAC	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	24, 97
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	2 cut(s)	195, 196
SetI	ASST	6 cut(s)	56, 88, 252, 297, 329, 340
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	54
SmaI	CCCGGG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SsiI	CCGC	1 cut(s)	111
StyD4I	CCNGG	2 cut(s)	193, 194
StyI	CCWWGG	1 cut(s)	50
TaaI	ACNGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	100
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	107
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	96, 214, 218, 222
TspMI	CCCGGG	1 cut(s)	194
VpaK11BI	GGWCC	1 cut(s)	54
XceI	RCATGY	1 cut(s)	305
XmaI	CCCGGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	129
XmnI	GAANNNNTTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.