Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007814.1

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

34236 .. 35447

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007814.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgcgcctcgccgccgccaactcctccgacccctccccttcattcgagtccacctccaccttcctctcctgcttctccatttccaagtcctccatcaactcccagctcgcccagtgccgactcaccaatcccactcacctcaaacccttcctcgaccaaatctctgcctccatctccgacctcgagaagctcgtcgccgagaactcctacttcttcccctcgtacaaagtccgatcgtcgctgaaaatgatctctaatctgagggtttataccggccctgtgaccaacttcggagccgactacggccatcaaattcaaccccgcgatggaggtgatgccatcggaggtggagaaaagaaaggcgaagtcgtcgtcatcgtcaacgacgtcgttttggggagaggaggacaggttgccttcgacattgtcttgagcaatgctaagataagcaaggagactggaggagagtttaacatttttgatgggttggtgatgggtaagaatttggagttgcattgtacagaattggagatttggaagttggccagatgggattcagtcaacagtatagtgcttactcttgaggagcctgaacgtggtcttaccatcatcaagctaacacatgtggatgttcctgaagaagacaggacctgccgagtgcctagaagccatctacaagctctacactggggagacggtggttgtatcaccacaacatatacaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0003674 GO:0003824 GO:0003924 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005929 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0008150 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0022607 GO:0032391 GO:0034622 GO:0035869 GO:0042995 GO:0043005 GO:0043226 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044441 GO:0044444 GO:0044463 GO:0044464 GO:0065003 GO:0071840 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TBCC TBCC_N

Protein Analysis

242

Amino Acids

26.55

Weight (kDa)

5.88

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
Acc36I	ACCTGC	1 cut(s)	659
AccII	CGCG	1 cut(s)	324
AciI	CCGC	3 cut(s)	12, 15, 322
AcoI	YGGCCR	2 cut(s)	304, 543
AcsI	RAATTY	2 cut(s)	312, 502
AcuI	CTGAAG	1 cut(s)	657
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	224, 520
AfiI	CCNNNNNNNGG	2 cut(s)	326, 596
AflIII	ACRYGT	1 cut(s)	622
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	4 cut(s)	106, 190, 616, 680
AluI	AGCT	4 cut(s)	106, 190, 616, 680
Alw26I	GTCTC	2 cut(s)	449, 687
AlwNI	CAGNNNCTG	1 cut(s)	651
Ama87I	CYCGRG	1 cut(s)	182
AoxI	GGCC	3 cut(s)	274, 304, 543
ApoI	RAATTY	2 cut(s)	312, 502
ArsI	GACNNNNNNTTYG	2 cut(s)	357, 389
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	275, 648
AsuHPI	GGTGA	5 cut(s)	115, 128, 344, 502, 700
AvaI	CYCGRG	1 cut(s)	182
AvaII	GGWCC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	545
BbsI	GAAGAC	1 cut(s)	648
BceAI	ACGGC	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	449, 687
BfaI	CTAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	659
BisI	GCNGC	2 cut(s)	12, 15
BlsI	GCNGC	2 cut(s)	13, 16
Bme18I	GGWCC	1 cut(s)	648
BmeT110I	CYCGRG	1 cut(s)	182
BmgT120I	GGNCC	2 cut(s)	275, 648
BmiI	GGNNCC	2 cut(s)	295, 588
BmrI	ACTGGG	2 cut(s)	106, 697
BmsI	GCATC	1 cut(s)	325
BmuI	ACTGGG	2 cut(s)	106, 697
BpiI	GAAGAC	1 cut(s)	648
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
BpmI	CTGGAG	1 cut(s)	480
BpuEI	CTTGAG	2 cut(s)	451, 602
BsaHI	GRCGYC	1 cut(s)	387
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 596
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	3 cut(s)	112, 463, 692
Bse3DI	GCAATG	1 cut(s)	442
BseGI	GGATG	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	326, 596
BseMI	GCAATG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	251
BseNI	ACTGG	3 cut(s)	112, 463, 692
BseRI	GAGGAG	4 cut(s)	13, 417, 477, 599
BseYI	CCCAGC	1 cut(s)	102
Bsh1236I	CGCG	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	236
BshFI	GGCC	3 cut(s)	276, 306, 545
BsiEI	CGRYCG	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	2 cut(s)	326, 596
BsmAI	GTCTC	2 cut(s)	449, 687
BsmBI	CGTCTC	1 cut(s)	687
BsnI	GGCC	3 cut(s)	276, 306, 545
BsoBI	CYCGRG	1 cut(s)	182
Bsp1407I	TGTACA	1 cut(s)	518
Bsp143I	GATC	2 cut(s)	233, 249
BspACI	CCGC	3 cut(s)	12, 15, 322
BspANI	GGCC	3 cut(s)	276, 306, 545
BspCNI	CTCAG	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	324
BspLI	GGNNCC	2 cut(s)	295, 588
BspMI	ACCTGC	1 cut(s)	659
BsrDI	GCAATG	1 cut(s)	442
BsrFI	RCCGGY	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	112, 463, 692
BssAI	RCCGGY	1 cut(s)	272
BssMI	GATC	2 cut(s)	233, 249
BssNI	GRCGYC	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	566, 698
BstACI	GRCGYC	1 cut(s)	387
BstAUI	TGTACA	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	260, 441
BstF5I	GGATG	1 cut(s)	634
BstFNI	CGCG	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	236, 252
BstMAI	GTCTC	2 cut(s)	449, 687
BstMBI	GATC	2 cut(s)	233, 249
BstMCI	CGRYCG	1 cut(s)	236
BstNSI	RCATGY	1 cut(s)	626
BstUI	CGCG	1 cut(s)	324
BstV2I	GAAGAC	1 cut(s)	648
BsuRI	GGCC	3 cut(s)	276, 306, 545
BtgZI	GCGATG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	634
BtsIMutI	CAGTG	2 cut(s)	119, 685
BveI	ACCTGC	1 cut(s)	659
Cac8I	GCNNGC	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	651
CfoI	GCGC	1 cut(s)	6
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	2 cut(s)	275, 648
Csp6I	GTAC	2 cut(s)	223, 519
CviAII	CATG	1 cut(s)	623
CviQI	GTAC	2 cut(s)	223, 519
DdeI	CTNAG	2 cut(s)	260, 441
DpnI	GATC	2 cut(s)	235, 251
DpnII	GATC	2 cut(s)	233, 249
EaeI	YGGCCR	2 cut(s)	304, 543
Eco47I	GGWCC	1 cut(s)	648
Eco57I	CTGAAG	1 cut(s)	657
Eco88I	CYCGRG	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	648
Esp3I	CGTCTC	1 cut(s)	687
FaeI	CATG	1 cut(s)	626
FaiI	YATR	5 cut(s)	270, 569, 624, 718, 720
FatI	CATG	1 cut(s)	622
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	2 cut(s)	12, 15
FokI	GGATG	1 cut(s)	641
Fsp4HI	GCNGC	2 cut(s)	12, 15
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	12, 15
GsaI	CCCAGC	1 cut(s)	106
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	276, 306, 545
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	626
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	2 cut(s)	382, 562
HindII	GTYRAC	2 cut(s)	382, 562
HinfI	GANTC	3 cut(s)	47, 120, 554
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	5 cut(s)	115, 128, 344, 502, 700
Hpy166II	GTNNAC	3 cut(s)	51, 382, 562
Hpy188I	TCNGA	6 cut(s)	28, 178, 233, 261, 293, 344
Hpy188III	TCNNGA	4 cut(s)	184, 430, 581, 635
Hpy8I	GTNNAC	3 cut(s)	51, 382, 562
Hpy99I	CGWCG	5 cut(s)	197, 241, 374, 389, 392
HpyAV	CCTTC	4 cut(s)	48, 70, 157, 427
HpyCH4III	ACNGT	2 cut(s)	566, 698
HpyCH4IV	ACGT	2 cut(s)	387, 595
HpyCH4V	TGCA	1 cut(s)	514
HpyF3I	CTNAG	2 cut(s)	260, 441
HpySE526I	ACGT	2 cut(s)	387, 595
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	626
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	233, 249
LmnI	GCTCC	2 cut(s)	293, 586
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	2 cut(s)	387, 595
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	2 cut(s)	235, 251
MboI	GATC	2 cut(s)	233, 249
MboII	GAAGA	3 cut(s)	205, 650, 653
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	3 cut(s)	312, 502, 524
MluNI	TGGCCA	1 cut(s)	545
MlyI	GAGTC	2 cut(s)	56, 114
MmeI	TCCRAC	2 cut(s)	51, 201
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
MseI	TTAA	1 cut(s)	471
MslI	CAYNNNNRTG	1 cut(s)	627
Msp20I	TGGCCA	1 cut(s)	545
MspI	CCGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	324
NdeII	GATC	2 cut(s)	233, 249
NlaIII	CATG	1 cut(s)	626
NlaIV	GGNNCC	2 cut(s)	295, 588
NmeAIII	GCCGAG	2 cut(s)	223, 680
NmuCI	GTSAC	1 cut(s)	280
NspI	RCATGY	1 cut(s)	626
PaeR7I	CTCGAG	1 cut(s)	182
PciI	ACATGT	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	3 cut(s)	189, 375, 384
PfeI	GAWTC	1 cut(s)	554
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	13, 16
Ple19I	CGATCG	1 cut(s)	236
PleI	GAGTC	2 cut(s)	55, 114
PpsI	GAGTC	2 cut(s)	55, 114
PpuMI	RGGWCCY	1 cut(s)	648
PscI	ACATGT	1 cut(s)	622
Psp5II	RGGWCCY	1 cut(s)	648
PspFI	CCCAGC	1 cut(s)	102
PspN4I	GGNNCC	2 cut(s)	295, 588
PspPI	GGNCC	2 cut(s)	275, 648
PspPPI	RGGWCCY	1 cut(s)	648
PstNI	CAGNNNCTG	1 cut(s)	651
PsyI	GACNNNGTC	1 cut(s)	425
PvuI	CGATCG	1 cut(s)	236
RsaI	GTAC	2 cut(s)	224, 520
RsaNI	GTAC	2 cut(s)	223, 519
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	12, 15
Sau3AI	GATC	2 cut(s)	233, 249
Sau96I	GGNCC	2 cut(s)	275, 648
SchI	GAGTC	2 cut(s)	56, 114
SfaNI	GCATC	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	648
SlaI	CTCGAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	3 cut(s)	182, 430, 581
SmoI	CTYRAG	3 cut(s)	182, 430, 581
Sse9I	AATT	3 cut(s)	312, 502, 524
SsiI	CCGC	3 cut(s)	12, 15, 322
SspMI	CTAG	1 cut(s)	663
TaaI	ACNGT	2 cut(s)	566, 698
TaiI	ACGT	2 cut(s)	390, 598
TaqI	TCGA	4 cut(s)	45, 153, 183, 420
TasI	AATT	3 cut(s)	312, 502, 524
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	2 cut(s)	14, 17
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	2 cut(s)	119, 692
TseFI	GTSAC	1 cut(s)	280
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	119, 692
Tth111I	GACNNNGTC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	648
XapI	RAATTY	2 cut(s)	312, 502
XceI	RCATGY	1 cut(s)	626
XhoI	CTCGAG	1 cut(s)	182
XspI	CTAG	1 cut(s)	663
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.