Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Forward (+)

60363151 .. 60363525

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0448100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGAGGCTGAGAGGAATGCTCTTATAGAGAAGTTGTACCGAGAGGCACCCAAGGGTACTCCACATGATTCTATCAAACTGAATTTGGAAGCAGAGTTTCCAATAATGGCTAAGGAGCTCGGGAGGAAGGGTAGGATGATCCATGGCATTGGTAACGTCCCTTACATACATTCTAATACACACAGAGTATCTGCATGTGCTAGCACCAATTCTAAGGTACTTGAATTACGTGCTCTTATCAACCAACTTAACTTCAACATGCTCAGTATGAAGGAACAAAATGGACACTTAAAGTCTCAAGGGGAAAGTTTATTAAGGCAATCTCCTGGACAGATGAGTGAGGATGACTTCCCCCACCCTAGCACCAACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

124

Amino Acids

13.94

Weight (kDa)

7.95

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	46
AclWI	GGATC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	82
AfaI	GTAC	3 cut(s)	38, 58, 219
AgsI	TTSAA	2 cut(s)	224, 256
AjnI	CCWGG	1 cut(s)	325
AluBI	AGCT	1 cut(s)	118
AluI	AGCT	1 cut(s)	118
Alw21I	GWGCWC	2 cut(s)	120, 235
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	82
AsuNHI	GCTAGC	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	46
BanII	GRGCYC	1 cut(s)	120
Bbv12I	GWGCWC	2 cut(s)	120, 235
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	201, 360
Bme1390I	CCNGG	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	119
BmiI	GGNNCC	1 cut(s)	48
BmrFI	CCNGG	1 cut(s)	327
BmtI	GCTAGC	1 cut(s)	204
BplI	GAGNNNNNCTC	1 cut(s)	36
Bpu10I	CCTNAGC	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	230
BsaJI	CCNNGG	2 cut(s)	51, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	51, 142
BseGI	GGATG	2 cut(s)	141, 349
BseMII	CTCAG	1 cut(s)	277
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	2 cut(s)	120, 235
BsiHKCI	CYCGRG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	300
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	22
BsoBI	CYCGRG	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	120, 235
Bsp143I	GATC	1 cut(s)	138
Bsp19I	CCATGG	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	204
BspPI	GGATC	1 cut(s)	133
BspT107I	GGYRCC	1 cut(s)	46
BssECI	CCNNGG	2 cut(s)	51, 142
BssMI	GATC	1 cut(s)	138
BssT1I	CCWWGG	2 cut(s)	51, 142
Bst2UI	CCWGG	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	230
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	4 cut(s)	9, 111, 213, 263
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	141, 349
BstKTI	GATC	1 cut(s)	141
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	327
BstNSI	RCATGY	2 cut(s)	198, 262
BstSCI	CCNGG	1 cut(s)	325
BstXI	CCANNNNNNTGG	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	142
BtsCI	GGATG	2 cut(s)	141, 349
Cac8I	GCNNGC	1 cut(s)	202
Csp6I	GTAC	3 cut(s)	37, 57, 218
CviAII	CATG	4 cut(s)	65, 143, 195, 259
CviJI	RGCY	3 cut(s)	8, 110, 118
CviKI_1	RGCY	3 cut(s)	8, 110, 118
CviQI	GTAC	3 cut(s)	37, 57, 218
DdeI	CTNAG	4 cut(s)	9, 111, 213, 263
DpnI	GATC	1 cut(s)	140
DpnII	GATC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	118
Eco130I	CCWWGG	2 cut(s)	51, 142
Eco24I	GRGCYC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	118
Eco88I	CYCGRG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	51, 142
EcoT38I	GRGCYC	1 cut(s)	120
ErhI	CCWWGG	2 cut(s)	51, 142
FaeI	CATG	4 cut(s)	68, 146, 198, 262
FaiI	YATR	7 cut(s)	26, 66, 144, 167, 196, 260, 269
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	64, 142, 194, 258
FokI	GGATG	2 cut(s)	148, 356
FriOI	GRGCYC	1 cut(s)	120
FspBI	CTAG	2 cut(s)	201, 360
Hin1II	CATG	4 cut(s)	68, 146, 198, 262
HinfI	GANTC	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	121
HpyAV	CCTTC	2 cut(s)	121, 265
HpyCH4IV	ACGT	2 cut(s)	156, 229
HpyCH4V	TGCA	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	9, 111, 213, 263
HpySE526I	ACGT	2 cut(s)	156, 229
Hsp92II	CATG	4 cut(s)	68, 146, 198, 262
Kzo9I	GATC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	115
LpnPI	CCDG	2 cut(s)	312, 339
MaeI	CTAG	2 cut(s)	201, 360
MaeII	ACGT	2 cut(s)	156, 229
MaeIII	GTNAC	1 cut(s)	152
MalI	GATC	1 cut(s)	140
MboI	GATC	1 cut(s)	138
MhlI	GDGCHC	2 cut(s)	120, 235
MluCI	AATT	3 cut(s)	82, 208, 224
MnlI	CCTC	4 cut(s)	6, 37, 117, 334
MseI	TTAA	3 cut(s)	249, 290, 314
MspR9I	CCNGG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	327
NcoI	CCATGG	1 cut(s)	142
NdeII	GATC	1 cut(s)	138
NheI	GCTAGC	1 cut(s)	200
NlaIII	CATG	4 cut(s)	68, 146, 198, 262
NlaIV	GGNNCC	1 cut(s)	48
NspI	RCATGY	2 cut(s)	198, 262
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	68
PfoI	TCCNGGA	1 cut(s)	325
Ppu21I	YACGTR	1 cut(s)	230
Psp124BI	GAGCTC	1 cut(s)	120
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	48
RsaI	GTAC	3 cut(s)	38, 58, 219
RsaNI	GTAC	3 cut(s)	37, 57, 218
SacI	GAGCTC	1 cut(s)	120
SaqAI	TTAA	3 cut(s)	249, 290, 314
Sau3AI	GATC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	120, 235
SetI	ASST	4 cut(s)	120, 159, 219, 232
SmlI	CTYRAG	1 cut(s)	297
SmoI	CTYRAG	1 cut(s)	297
Sse9I	AATT	3 cut(s)	82, 208, 224
SspMI	CTAG	2 cut(s)	201, 360
SstI	GAGCTC	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	2 cut(s)	51, 142
TaiI	ACGT	2 cut(s)	159, 232
TasI	AATT	3 cut(s)	82, 208, 224
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	3 cut(s)	249, 290, 314
Tru9I	TTAA	3 cut(s)	249, 290, 314
TspDTI	ATGAA	1 cut(s)	284
XapI	RAATTY	1 cut(s)	82
XceI	RCATGY	2 cut(s)	198, 262
XspI	CTAG	2 cut(s)	201, 360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.