Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

49499833 .. 49561963

Gene Structure 62131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTGTCAAATCACGCTGCTAGTTCTATTAATCTTTGTAATTTCTGGCATGCTGAGTGGACAAGGTTTGTATTGTATCTTGCTGCAGCTACTAACAATTTTGAGAGGAGAAGTTTGGTTACGGAGGGTGGTGCCATTCCAGATGCAGAGTGTTTGGCGGGTTGCATAGAGAGATATAACACACAACATCAGAAATGCTTTGTGGGAGATTGGGCATGCTGGTCCTATATGGGTTTGAGAAAGCTAATTAACCATCAAAAGTGGAGGCAGTCATATTTCTTTCTTGCATCTTTGGTTCTTGGATTTTCCTGTGTAATTCATCAAGTGCAAGAGGCCTCCAAGTGCAAGGTAGACATGAGGAAGGGGAATATGGATTTTTTGCATCCATGTACTGCTAATAGAGTAACTGAGCGTCCCGGGTTTAAAGATGAAGTTCTTATCAACTTCATTCATGGTCTTTTGGATGTAAAGGTGCTTACTCTTGAGGAGCCTGAACGTGGTCTTACCATCGTCAAGCTAACGCATGTGGATGTTCCTGAAGAAGACAGGTTATTTCTCTGCTTTTGTTTTGTAGTTTTTGGTATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

PWI

Protein Analysis

196

Amino Acids

22.51

Weight (kDa)

6.69

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	1 cut(s)	158
AcuI	CTGAAG	1 cut(s)	558
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	497
AluBI	AGCT	3 cut(s)	89, 244, 517
AluI	AGCT	3 cut(s)	89, 244, 517
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	17, 83, 86
AseI	ATTAAT	1 cut(s)	30
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	2 cut(s)	417, 418
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	222
BanI	GGYRCC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BbsI	GAAGAC	1 cut(s)	549
BbvI	GCAGC	3 cut(s)	4, 70, 98
BccI	CCATC	2 cut(s)	261, 515
BcnI	CCSGG	2 cut(s)	417, 418
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	3 cut(s)	18, 84, 87
BlsI	GCNGC	3 cut(s)	19, 85, 88
Bme1390I	CCNGG	2 cut(s)	417, 418
Bme18I	GGWCC	1 cut(s)	222
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	2 cut(s)	133, 489
BmrFI	CCNGG	2 cut(s)	417, 418
BmsI	GCATC	3 cut(s)	133, 296, 391
BpiI	GAAGAC	1 cut(s)	549
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	2 cut(s)	417, 418
BsaJI	CCNNGG	1 cut(s)	416
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	416
BseGI	GGATG	3 cut(s)	382, 469, 535
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	45, 399
BseRI	GAGGAG	2 cut(s)	121, 500
BseXI	GCAGC	3 cut(s)	4, 70, 98
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	416
BspACI	CCGC	1 cut(s)	158
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	2 cut(s)	46, 400
BspLI	GGNNCC	2 cut(s)	133, 489
BspMAI	CTGCAG	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	51, 217
BstDEI	CTNAG	2 cut(s)	54, 408
BstF5I	GGATG	3 cut(s)	382, 469, 535
BstNSI	RCATGY	3 cut(s)	53, 219, 527
BstSCI	CCNGG	2 cut(s)	415, 416
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	4, 70, 98
BstV2I	GAAGAC	1 cut(s)	549
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	382, 469, 535
Cac8I	GCNNGC	2 cut(s)	51, 217
Cfr13I	GGNCC	1 cut(s)	222
Cfr9I	CCCGGG	1 cut(s)	416
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	6 cut(s)	50, 216, 355, 387, 452, 524
CviJI	RGCY	5 cut(s)	89, 244, 335, 490, 517
CviKI_1	RGCY	5 cut(s)	89, 244, 335, 490, 517
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	2 cut(s)	54, 408
DraI	TTTAAA	1 cut(s)	424
Eco147I	AGGCCT	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	222
Eco57I	CTGAAG	1 cut(s)	558
Eco88I	CYCGRG	1 cut(s)	416
FaeI	CATG	6 cut(s)	53, 219, 358, 390, 455, 527
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	6 cut(s)	49, 215, 354, 386, 451, 523
FauI	CCCGC	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	3 cut(s)	18, 84, 87
FokI	GGATG	3 cut(s)	369, 476, 542
Fsp4HI	GCNGC	3 cut(s)	18, 84, 87
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	3 cut(s)	18, 84, 87
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	417
HgaI	GACGC	1 cut(s)	401
Hin1II	CATG	6 cut(s)	53, 219, 358, 390, 455, 527
HpaII	CCGG	1 cut(s)	417
Hpy166II	GTNNAC	2 cut(s)	60, 352
Hpy188I	TCNGA	1 cut(s)	192
Hpy188III	TCNNGA	3 cut(s)	140, 482, 536
Hpy8I	GTNNAC	2 cut(s)	60, 352
HpyAV	CCTTC	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	86, 146, 165, 287, 328, 345, 382
HpyF3I	CTNAG	2 cut(s)	54, 408
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	6 cut(s)	53, 219, 358, 390, 455, 527
LmnI	GCTCC	1 cut(s)	487
LpnPI	CCDG	8 cut(s)	31, 153, 205, 322, 430, 504, 532, 549
Lsp1109I	GCAGC	3 cut(s)	4, 70, 98
LweI	GCATC	3 cut(s)	133, 296, 391
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	2 cut(s)	118, 403
MboII	GAAGA	2 cut(s)	551, 554
MluCI	AATT	4 cut(s)	40, 97, 246, 315
MnlI	CCTC	7 cut(s)	99, 118, 258, 325, 346, 351, 478
MseI	TTAA	4 cut(s)	30, 249, 423, 589
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	417, 418
NciI	CCSGG	2 cut(s)	417, 418
NlaIII	CATG	6 cut(s)	53, 219, 358, 390, 455, 527
NlaIV	GGNNCC	2 cut(s)	133, 489
NspI	RCATGY	3 cut(s)	53, 219, 527
PaeI	GCATGC	2 cut(s)	53, 219
PceI	AGGCCT	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	19, 85, 88
PshBI	ATTAAT	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	133, 489
PspPI	GGNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	88
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	30, 249, 423, 589
SatI	GCNGC	3 cut(s)	18, 84, 87
Sau96I	GGNCC	1 cut(s)	222
ScrFI	CCNGG	2 cut(s)	417, 418
SetI	ASST	8 cut(s)	68, 91, 246, 351, 474, 499, 519, 551
SfaNI	GCATC	3 cut(s)	133, 296, 391
SfcI	CTRYAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	222
SmaI	CCCGGG	1 cut(s)	418
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
SphI	GCATGC	2 cut(s)	53, 219
Sse9I	AATT	4 cut(s)	40, 97, 246, 315
SseBI	AGGCCT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	158
SspMI	CTAG	1 cut(s)	21
StuI	AGGCCT	1 cut(s)	335
StyD4I	CCNGG	2 cut(s)	415, 416
TaiI	ACGT	1 cut(s)	499
TasI	AATT	4 cut(s)	40, 97, 246, 315
TatI	WGTACW	1 cut(s)	389
Tru1I	TTAA	4 cut(s)	30, 249, 423, 589
Tru9I	TTAA	4 cut(s)	30, 249, 423, 589
TseI	GCWGC	3 cut(s)	17, 83, 86
TspDTI	ATGAA	4 cut(s)	308, 436, 440, 444
TspGWI	ACGGA	1 cut(s)	137
TspMI	CCCGGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	30
XceI	RCATGY	3 cut(s)	53, 219, 527
XmaI	CCCGGG	1 cut(s)	416
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.