Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004250

Physical Location & Seq

Genomic Coordinates Reverse (-)

46705784 .. 46708161

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G022050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGGTTTGAGAAGGCTAATTAACCATCAAAAGTGGAGGCAGTCATATATCTTTCTTGCATCTTTGGTTGTTGGATTTGCCTGTGTAATTCATCAAGTGCAAGAGGCCTCCAAGTACAAGGTGTTAAGAAGCTTCACATCTCAGGCATTGAAAACTTCCAGAATGCACAGTATTAGTTGTGTCACCTATGAAGCCAGATTCCTCTGCTTCAACAATTCTGTAGACATGAGGAAGGCGAATATGGATTTTTTGCATCCAGGTACTGCTAATAGAGTAACTGAGCTTCCCGGGTTTAAAGATGAAGTTCTTATCAACTTCATTCATGGTCTTTTGGATGTAAAGGTGCTTACTCTTGAGGAGCCTGAACGTGGTCTTACCATCGTCAAGCTAACGCATGTTGATGTTGCTGAAGAAGACAGTGGCAGTCCATCACATCCAACAGCAAATGAAGCTTCCACTAACACAAAAGAGAACTTCCAAGCAGATGAACTAATGGATGACATGATGAAATCCCATGTAATGATTGGTTCGAACTTTGAATGTATAATATTTTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko03015 map03013 map03015

Pfam Domains

Protein Families

PWI

Protein Analysis

185

Amino Acids

20.97

Weight (kDa)

6.23

Isoelectric Point (pI)

33.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004250)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0354331 RchiOBHm_Chr1g0354381 RchiOBHm_Chr1g0354421 RchiOBHm_Chr1g0354471 RchiOBHm_Chr1g0367371 RchiOBHm_Chr2g0122681
rosa_laevigata	RLG00000029825 RLG00000031606
rosa_multiflora	Rmu_sc0003133.1_g000028 Rmu_sc0007814.1_g000008 Rmu_sc0012562.1_g000010
rosa_roxburghii	Rroxscaffold_1G00020570 Rroxscaffold_4G00298310 Rroxscaffold_4G00301030 Rroxscaffold_6G00399340 Rroxscaffold_6G00418790
rosa_rugosa	Rorug01G0124900 Rorug01G0125000 Rorug01G0125100 Rorug01G0125100 Rorug03G0104000.1 Rorug04G0448100 Rorug05G0112400 Rorug07G0203700
rosa_samantha	Rh1AG252500 Rh1AG252600 Rh1AG252800 Rh1AG253300 Rh1BG224700 Rh1CG237100 Rh1DG252300 Rh6AG288900
rosa_wichuraiana	Rw1G022050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	222
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	2 cut(s)	116, 262
AfiI	CCNNNNNNNGG	1 cut(s)	368
AgsI	TTSAA	3 cut(s)	151, 211, 539
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	132, 283, 388, 452
AluI	AGCT	4 cut(s)	132, 283, 388, 452
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	105
AsuC2I	CCSGG	2 cut(s)	288, 289
AsuHPI	GGTGA	1 cut(s)	175
AsuII	TTCGAA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	287
BarI	GAAGNNNNNNTAC	2 cut(s)	267, 299
BbsI	GAAGAC	1 cut(s)	420
BccI	CCATC	3 cut(s)	33, 386, 436
BciT130I	CCWGG	1 cut(s)	258
BcnI	CCSGG	2 cut(s)	288, 289
BfmI	CTRYAG	1 cut(s)	219
Bme1390I	CCNGG	3 cut(s)	258, 288, 289
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	360
BmrFI	CCNGG	3 cut(s)	258, 288, 289
BmsI	GCATC	2 cut(s)	68, 262
BpiI	GAAGAC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	2 cut(s)	288, 289
BsaJI	CCNNGG	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	287
BseGI	GGATG	4 cut(s)	253, 340, 433, 502
BseLI	CCNNNNNNNGG	1 cut(s)	368
BseMII	CTCAG	2 cut(s)	155, 270
BseRI	GAGGAG	1 cut(s)	371
BshFI	GGCC	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	368
BsmI	GAATGC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	530
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	154, 271
BspLI	GGNNCC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	530
BssECI	CCNNGG	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	2 cut(s)	170, 419
BstBI	TTCGAA	1 cut(s)	530
BstDEI	CTNAG	2 cut(s)	141, 279
BstF5I	GGATG	4 cut(s)	253, 340, 433, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	449
BstNI	CCWGG	1 cut(s)	258
BstNSI	RCATGY	1 cut(s)	398
BstSCI	CCNGG	3 cut(s)	256, 286, 287
BstSFI	CTRYAG	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	420
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	4 cut(s)	253, 340, 433, 502
BtsIMutI	CAGTG	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	263
Cfr9I	CCCGGG	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	115, 261
CviAII	CATG	5 cut(s)	226, 323, 395, 502, 515
CviJI	RGCY	8 cut(s)	16, 107, 132, 194, 283, 361, 388, 452
CviKI_1	RGCY	8 cut(s)	16, 107, 132, 194, 283, 361, 388, 452
CviQI	GTAC	2 cut(s)	115, 261
DdeI	CTNAG	2 cut(s)	141, 279
DraI	TTTAAA	1 cut(s)	295
Eco147I	AGGCCT	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	287
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	5 cut(s)	229, 326, 398, 505, 518
FatI	CATG	5 cut(s)	225, 322, 394, 501, 514
FblI	GTMKAC	1 cut(s)	222
FokI	GGATG	4 cut(s)	240, 347, 420, 509
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	5 cut(s)	229, 326, 398, 505, 518
HindIII	AAGCTT	2 cut(s)	130, 450
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	1 cut(s)	175
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	159, 353
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	2 cut(s)	6, 226
HpyCH4III	ACNGT	2 cut(s)	170, 419
HpyCH4IV	ACGT	1 cut(s)	367
HpyCH4V	TGCA	4 cut(s)	59, 100, 166, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	449
HpyF3I	CTNAG	2 cut(s)	141, 279
HpySE526I	ACGT	1 cut(s)	367
Hsp92II	CATG	5 cut(s)	229, 326, 398, 505, 518
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	8 cut(s)	94, 128, 172, 208, 243, 270, 301, 375
LweI	GCATC	2 cut(s)	68, 262
MaeII	ACGT	1 cut(s)	367
MaeIII	GTNAC	2 cut(s)	181, 274
MboII	GAAGA	2 cut(s)	422, 425
MluCI	AATT	3 cut(s)	18, 87, 214
MmeI	TCCRAC	2 cut(s)	52, 461
MnlI	CCTC	6 cut(s)	30, 97, 118, 212, 222, 349
MseI	TTAA	3 cut(s)	21, 125, 294
MslI	CAYNNNNRTG	1 cut(s)	399
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	3 cut(s)	258, 288, 289
Mva1269I	GAATGC	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	449
NciI	CCSGG	2 cut(s)	288, 289
NlaIII	CATG	5 cut(s)	229, 326, 398, 505, 518
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	181
NspI	RCATGY	1 cut(s)	398
NspV	TTCGAA	1 cut(s)	530
PceI	AGGCCT	1 cut(s)	107
PctI	GAATGC	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	360
PstNI	CAGNNNCTG	1 cut(s)	263
RsaI	GTAC	2 cut(s)	116, 262
RsaNI	GTAC	2 cut(s)	115, 261
RseI	CAYNNNNRTG	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	21, 125, 294
ScrFI	CCNGG	3 cut(s)	258, 288, 289
SetI	ASST	9 cut(s)	123, 134, 188, 262, 285, 345, 370, 390, 454
SfaNI	GCATC	2 cut(s)	68, 262
SfcI	CTRYAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	530
SmaI	CCCGGG	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	399
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	3 cut(s)	18, 87, 214
SseBI	AGGCCT	1 cut(s)	107
SspI	AATATT	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	256, 286, 287
TaaI	ACNGT	2 cut(s)	170, 419
TaiI	ACGT	1 cut(s)	370
TaqI	TCGA	1 cut(s)	530
TasI	AATT	3 cut(s)	18, 87, 214
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	3 cut(s)	21, 125, 294
Tru9I	TTAA	3 cut(s)	21, 125, 294
TscAI	CASTG	1 cut(s)	424
TseFI	GTSAC	1 cut(s)	181
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	8 cut(s)	80, 204, 307, 311, 315, 462, 501, 521
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	1 cut(s)	424
XceI	RCATGY	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	521
XmaI	CCCGGG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.