Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

62796466 .. 62797097

Gene Structure 632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAAACTACAGACGAGCCAAGCTCGCAGTCGACGCCTTTCGTGGCTTTACGCCAAGAATGGTAACTAGACCAGAGCCCGTCTCCGGAGTCTTCTCCACCAAGTCTTCATCTTTGGCCTCAGAACCAGCCAAGATTTCTGGGTTTTCTCCTTCCCATTCTATTTTACACAAACCAATTCCACACACACAGTTGAGATATTATCATGTGGATCGGCGGCATTTTGATCCTCGCCGATGGGCTGACCGGTTCAAGAGATATTTGATTTACCCCGGAATTTTATTCCTGTTGTTACTATTGTGGAGGGTGGTGGGGTTTTTTACCACCAATTATGAGACACTGCCATACACTAAACGTCGGCTTTTTATAATTCTGTCAACTGATTTGGAGAGGAAGCTGGGAGAGTCGCAATTTGAGGAAATGAAAGCTTCACAATTTGAGGGGAAGATTTTGCTGGCTATACACCCGGAAAGAGTGAGGATTAGGGTGATTGCCAAGGATATAATTGATGCGTTGAAGAGAGGGTTGAGCCATGATCAGGACATGGGGAATGCCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

186

Amino Acids

21.67

Weight (kDa)

10.26

Isoelectric Point (pI)

46.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	33
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	219, 221
AcsI	RAATTY	1 cut(s)	276
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	86, 538
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	253, 517
AluBI	AGCT	3 cut(s)	25, 397, 428
AluI	AGCT	3 cut(s)	25, 397, 428
Alw26I	GTCTC	2 cut(s)	88, 329
AlwI	GGATC	2 cut(s)	219, 221
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	1 cut(s)	117
ApoI	RAATTY	1 cut(s)	276
AsiGI	ACCGGT	1 cut(s)	246
AsuC2I	CCSGG	2 cut(s)	273, 467
AsuHPI	GGTGA	1 cut(s)	499
BanII	GRGCYC	1 cut(s)	81
BbsI	GAAGAC	2 cut(s)	85, 99
BccI	CCATC	1 cut(s)	231
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	273, 467
BcoDI	GTCTC	2 cut(s)	88, 329
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	10
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme1390I	CCNGG	2 cut(s)	273, 467
BmrFI	CCNGG	2 cut(s)	273, 467
BmsI	GCATC	1 cut(s)	499
BpiI	GAAGAC	2 cut(s)	85, 99
BplI	GAGNNNNNCTC	4 cut(s)	9, 41, 68, 100
BpuMI	CCSGG	2 cut(s)	273, 467
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	271, 495
BsaWI	WCCGGW	2 cut(s)	86, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 538
Bse118I	RCCGGY	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	2 cut(s)	271, 495
BseLI	CCNNNNNNNGG	2 cut(s)	86, 538
BseMII	CTCAG	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	397
BshFI	GGCC	1 cut(s)	119
BshTI	ACCGGT	1 cut(s)	246
BsiSI	CCGG	4 cut(s)	87, 247, 273, 467
BslI	CCNNNNNNNGG	2 cut(s)	86, 538
BsmAI	GTCTC	2 cut(s)	88, 329
BsmBI	CGTCTC	1 cut(s)	88
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	1 cut(s)	119
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	211, 226, 535
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	134
BspEI	TCCGGA	1 cut(s)	86
BspPI	GGATC	2 cut(s)	219, 221
BsrFI	RCCGGY	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	246
BssECI	CCNNGG	2 cut(s)	271, 495
BssMI	GATC	3 cut(s)	211, 226, 535
BssNI	GRCGYC	1 cut(s)	36
BssT1I	CCWWGG	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	192
Bst6I	CTCTTC	1 cut(s)	512
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	2 cut(s)	27, 456
BstDEI	CTNAG	1 cut(s)	121
BstKTI	GATC	3 cut(s)	214, 229, 538
BstMAI	GTCTC	2 cut(s)	88, 329
BstMBI	GATC	3 cut(s)	211, 226, 535
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 35
BstSCI	CCNGG	2 cut(s)	271, 465
BstSFI	CTRYAG	1 cut(s)	10
BstV2I	GAAGAC	2 cut(s)	85, 99
BsuRI	GGCC	1 cut(s)	119
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	1 cut(s)	338
Cac8I	GCNNGC	2 cut(s)	27, 456
Cfr10I	RCCGGY	1 cut(s)	246
CseI	GACGC	1 cut(s)	44
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	3 cut(s)	206, 533, 544
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	3 cut(s)	213, 228, 537
DpnII	GATC	3 cut(s)	211, 226, 535
Eam1104I	CTCTTC	1 cut(s)	512
EarI	CTCTTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	495
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	3 cut(s)	209, 536, 547
FaiI	YATR	8 cut(s)	207, 333, 346, 368, 461, 503, 534, 545
FatI	CATG	3 cut(s)	205, 532, 543
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	218
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	1 cut(s)	119
HapII	CCGG	4 cut(s)	87, 247, 273, 467
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	3 cut(s)	209, 536, 547
HincII	GTYRAC	2 cut(s)	34, 378
HindII	GTYRAC	2 cut(s)	34, 378
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	90, 404
HpaII	CCGG	4 cut(s)	87, 247, 273, 467
HphI	GGTGA	1 cut(s)	499
Hpy166II	GTNNAC	2 cut(s)	34, 378
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	3 cut(s)	87, 253, 539
Hpy8I	GTNNAC	2 cut(s)	34, 378
Hpy99I	CGWCG	2 cut(s)	38, 360
HpyAV	CCTTC	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 35
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	3 cut(s)	209, 536, 547
Kpn2I	TCCGGA	1 cut(s)	86
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	3 cut(s)	211, 226, 535
LweI	GCATC	1 cut(s)	499
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	2 cut(s)	64, 291
MalI	GATC	3 cut(s)	213, 228, 537
MboI	GATC	3 cut(s)	211, 226, 535
MboII	GAAGA	4 cut(s)	85, 99, 457, 529
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	7 cut(s)	177, 276, 328, 369, 410, 434, 504
MlyI	GAGTC	2 cut(s)	99, 413
MnlI	CCTC	8 cut(s)	130, 240, 297, 384, 409, 433, 471, 515
MroI	TCCGGA	1 cut(s)	86
MspI	CCGG	4 cut(s)	87, 247, 273, 467
MspR9I	CCNGG	2 cut(s)	273, 467
Mva1269I	GAATGC	1 cut(s)	556
MwoI	GCNNNNNNNGC	2 cut(s)	26, 35
NciI	CCSGG	2 cut(s)	273, 467
NdeII	GATC	3 cut(s)	211, 226, 535
NlaIII	CATG	3 cut(s)	209, 536, 547
PctI	GAATGC	1 cut(s)	556
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	219
PleI	GAGTC	2 cut(s)	98, 412
PpsI	GAGTC	2 cut(s)	98, 412
PsiI	TTATAA	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	397
SalI	GTCGAC	1 cut(s)	32
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	3 cut(s)	211, 226, 535
SchI	GAGTC	2 cut(s)	99, 413
ScrFI	CCNGG	2 cut(s)	273, 467
SduI	GDGCHC	1 cut(s)	81
SetI	ASST	4 cut(s)	27, 358, 399, 430
SfaNI	GCATC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	10
Sse9I	AATT	7 cut(s)	177, 276, 328, 369, 410, 434, 504
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	271, 465
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	192
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	33
TasI	AATT	7 cut(s)	177, 276, 328, 369, 410, 434, 504
TauI	GCSGC	1 cut(s)	220
TscAI	CASTG	1 cut(s)	345
TspDTI	ATGAA	2 cut(s)	99, 437
TspRI	CASTG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	276
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.