Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Reverse (-)

15788276 .. 15793265

Gene Structure 4990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTTGGCTCCAAAACCACTGGTGTGCAAACGGTCTCTTTTGGGCGAGTGGTTGCGCGGGCGTGCCGGCACCGCGGGATTTGCTCCAAGATTGCTTGGCCTCCAAGTAGGCTTTATTTAGCCTCTAAACAATATATTCCGAGCTTATCGCAAATATATAGCTTGGGCCACCGATATTGGCCCGGTCTTCTTCGAGTCCCCCTTATCGGGAAAAAATGTTATTTTGGGTTCAAACAGGATCTACCGAGTTCTGCAAGCATCACTCCATTCTCACATAAAGCACTGATGGAATATAAACTCACAAGGGGAATACAAAAGACAATTAAATCAAGAAGCTCAGATGGGGTCGCCAAAAGATTGCAATCACTCAACAGCAAGTCACCTTCTCAAAAGGTTGTGCAAGGAGTCTTGAAGAAGGCTAGTGAGCTATGGCAAGTCACCTTCTCAAAAGGTTGTGCAAGGAGTCTTGAAGAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.68

Weight (kDa)

10.41

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	69
AccII	CGCG	2 cut(s)	58, 75
AciI	CCGC	3 cut(s)	58, 73, 75
AclWI	GGATC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	206, 207
AgsI	TTSAA	3 cut(s)	232, 412, 470
AleI	CACNNNNGTG	1 cut(s)	23
AluBI	AGCT	4 cut(s)	144, 162, 336, 427
AluI	AGCT	4 cut(s)	144, 162, 336, 427
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	3 cut(s)	98, 166, 179
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	2 cut(s)	166, 180
AsuC2I	CCSGG	1 cut(s)	183
AsuHPI	GGTGA	2 cut(s)	372, 430
BanI	GGYRCC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	179
BccI	CCATC	2 cut(s)	280, 335
BcnI	CCSGG	1 cut(s)	183
BcoDI	GTCTC	1 cut(s)	40
BfaI	CTAG	2 cut(s)	420, 478
Bme1390I	CCNGG	1 cut(s)	183
BmgT120I	GGNCC	2 cut(s)	166, 180
BmiI	GGNNCC	2 cut(s)	10, 71
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	1 cut(s)	267
BpiI	GAAGAC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	183
BsaBI	GATNNNNATC	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 207
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	1 cut(s)	25
Bse8I	GATNNNNATC	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	73
BseJI	GATNNNNATC	1 cut(s)	361
BseLI	CCNNNNNNNGG	2 cut(s)	206, 207
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	1 cut(s)	25
Bsh1236I	CGCG	2 cut(s)	58, 75
BshFI	GGCC	3 cut(s)	100, 168, 181
BshNI	GGYRCC	1 cut(s)	69
BsiSI	CCGG	2 cut(s)	67, 183
BslFI	GGGAC	1 cut(s)	182
BslI	CCNNNNNNNGG	2 cut(s)	206, 207
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	182
BsnI	GGCC	3 cut(s)	100, 168, 181
Bso31I	GGTCTC	1 cut(s)	40
Bsp143I	GATC	1 cut(s)	238
BspACI	CCGC	3 cut(s)	58, 73, 75
BspANI	GGCC	3 cut(s)	100, 168, 181
BspCNI	CTCAG	1 cut(s)	350
BspFNI	CGCG	2 cut(s)	58, 75
BspLI	GGNNCC	2 cut(s)	10, 71
BspPI	GGATC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	34
BstC8I	GCNNGC	4 cut(s)	60, 64, 68, 256
BstDEI	CTNAG	1 cut(s)	337
BstDSI	CCRYGG	1 cut(s)	73
BstFNI	CGCG	2 cut(s)	58, 75
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	72, 81
BstSCI	CCNGG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	58, 75
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	100, 168, 181
BtgI	CCRYGG	1 cut(s)	73
BtsIMutI	CAGTG	2 cut(s)	18, 281
Cac8I	GCNNGC	4 cut(s)	60, 64, 68, 256
CfoI	GCGC	1 cut(s)	58
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	2 cut(s)	166, 180
Cfr42I	CCGCGG	1 cut(s)	76
CspCI	CAANNNNNGTGG	2 cut(s)	158, 193
DdeI	CTNAG	1 cut(s)	337
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco31I	GGTCTC	1 cut(s)	40
FaiI	YATR	6 cut(s)	135, 157, 159, 276, 294, 430
FaqI	GGGAC	1 cut(s)	182
FauI	CCCGC	2 cut(s)	51, 68
FspBI	CTAG	2 cut(s)	420, 478
GlaI	GCGC	1 cut(s)	57
HaeIII	GGCC	3 cut(s)	100, 168, 181
HapII	CCGG	2 cut(s)	67, 183
HhaI	GCGC	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	3 cut(s)	195, 405, 463
HpaII	CCGG	2 cut(s)	67, 183
HphI	GGTGA	2 cut(s)	372, 430
Hpy188I	TCNGA	2 cut(s)	141, 340
Hpy188III	TCNNGA	4 cut(s)	208, 330, 409, 467
HpyAV	CCTTC	4 cut(s)	393, 409, 451, 467
HpyCH4III	ACNGT	1 cut(s)	34
HpyCH4V	TGCA	5 cut(s)	28, 254, 361, 400, 458
HpyF10VI	GCNNNNNNNGC	2 cut(s)	72, 81
HpyF3I	CTNAG	1 cut(s)	337
HspAI	GCGC	1 cut(s)	56
KroI	GCCGGC	1 cut(s)	66
KroNI	GCCGGC	1 cut(s)	68
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	238
LmnI	GCTCC	2 cut(s)	14, 89
LpnPI	CCDG	4 cut(s)	6, 80, 196, 221
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	420, 478
MaeIII	GTNAC	2 cut(s)	378, 436
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	179, 182, 424
MflI	RGATCY	1 cut(s)	238
MluCI	AATT	1 cut(s)	321
MlyI	GAGTC	3 cut(s)	204, 414, 472
MnlI	CCTC	2 cut(s)	111, 133
MroNI	GCCGGC	1 cut(s)	66
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	1 cut(s)	23
MspA1I	CMGCKG	1 cut(s)	75
MspI	CCGG	2 cut(s)	67, 183
MspR9I	CCNGG	1 cut(s)	183
MvnI	CGCG	2 cut(s)	58, 75
MwoI	GCNNNNNNNGC	2 cut(s)	72, 81
NaeI	GCCGGC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	183
NdeII	GATC	1 cut(s)	238
NgoMIV	GCCGGC	1 cut(s)	66
NlaIV	GGNNCC	2 cut(s)	10, 71
NmuCI	GTSAC	2 cut(s)	378, 436
OliI	CACNNNNGTG	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	68
PleI	GAGTC	3 cut(s)	203, 413, 471
PpsI	GAGTC	3 cut(s)	203, 413, 471
PspN4I	GGNNCC	2 cut(s)	10, 71
PspPI	GGNCC	2 cut(s)	166, 180
PsuI	RGATCY	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	324
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	2 cut(s)	166, 180
SchI	GAGTC	3 cut(s)	204, 414, 472
ScrFI	CCNGG	1 cut(s)	183
SetI	ASST	8 cut(s)	146, 164, 338, 385, 396, 429, 443, 454
SfaNI	GCATC	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	23
Sse9I	AATT	1 cut(s)	321
SsiI	CCGC	3 cut(s)	58, 73, 75
SspMI	CTAG	2 cut(s)	420, 478
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	321
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	2 cut(s)	25, 288
TseFI	GTSAC	2 cut(s)	378, 436
Tsp45I	GTSAC	2 cut(s)	378, 436
TspRI	CASTG	2 cut(s)	25, 288
XspI	CTAG	2 cut(s)	420, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.