Rroxscaffold_165G00436950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000165
OG0004835
Physical Location & Seq
Reverse (-)
50133 .. 62572
12440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_165G00436950.1

Sequence Viewer

Length: 360 bp
ATGTCATCCTCTAAGAGATTTAATCTTCCGGATGGAAGAAAAGATAAGGAAGGAAGGATTGAAGTGGTGAAGAAGGAATTGAGTTTCGAAAGAGAGGTGAAGGAGTCTGGACCCTTTTCCCAGAACTACCGTAGAGTTTTGTGTAGCCTGAAATTGAAGTCTTCGGCATCAGACTTCAATTTGAAGCCTTTGGAGTTGAGCAACACTTCTTCTCCATTGTCGGAAGGAAGCGAAGGCAAGACACGGCGGAAGCACATACGATGTGTTTGGCTCCAAAACCAGCTGGTGTGCAAACAAGTCTCTTTTGAGCGAGTAGTTGCGCGGGCGTGCCGGCACCGCGGGTGCGCGTCGTTGGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.54

Weight (kDa)

9.98

Isoelectric Point (pI)

52.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 333
AccII CGCG 3 cut(s) 322, 339, 347
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 4 cut(s) 247, 322, 337, 339
AgsI TTSAA 4 cut(s) 62, 157, 178, 184
AluBI AGCT 1 cut(s) 283
AluI AGCT 1 cut(s) 283
Alw26I GTCTC 1 cut(s) 304
Aor13HI TCCGGA 1 cut(s) 28
AspLEI GCGC 2 cut(s) 322, 347
AspS9I GGNCC 1 cut(s) 110
AsuHPI GGTGA 2 cut(s) 79, 109
AsuII TTCGAA 1 cut(s) 87
AvaII GGWCC 1 cut(s) 110
BanI GGYRCC 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 153
BccI CCATC 1 cut(s) 26
BceAI ACGGC 1 cut(s) 260
BcoDI GTCTC 1 cut(s) 304
Bme18I GGWCC 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 110
BmiI GGNNCC 3 cut(s) 112, 272, 335
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 1 cut(s) 153
Bpu14I TTCGAA 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 337
BsaWI WCCGGW 1 cut(s) 28
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bse118I RCCGGY 1 cut(s) 330
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 5, 37
Bsh1236I CGCG 3 cut(s) 322, 339, 347
BshNI GGYRCC 1 cut(s) 333
BsiSI CCGG 2 cut(s) 29, 331
BsmAI GTCTC 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 87
Bsp13I TCCGGA 1 cut(s) 28
BspACI CCGC 4 cut(s) 247, 322, 337, 339
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 3 cut(s) 322, 339, 347
BspLI GGNNCC 3 cut(s) 112, 272, 335
BspT104I TTCGAA 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 333
BsrFI RCCGGY 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 131
BstBI TTCGAA 1 cut(s) 87
BstC8I GCNNGC 3 cut(s) 324, 328, 332
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 337
BstF5I GGATG 2 cut(s) 5, 37
BstFNI CGCG 3 cut(s) 322, 339, 347
BstHHI GCGC 2 cut(s) 322, 347
BstMAI GTCTC 1 cut(s) 304
BstMWI GCNNNNNNNGC 1 cut(s) 336
BstUI CGCG 3 cut(s) 322, 339, 347
BstV2I GAAGAC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 337
BtsCI GGATG 2 cut(s) 5, 37
Cac8I GCNNGC 3 cut(s) 324, 328, 332
CfoI GCGC 2 cut(s) 322, 347
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 110
Cfr42I CCGCGG 1 cut(s) 340
CseI GACGC 1 cut(s) 336
CviJI RGCY 4 cut(s) 147, 187, 271, 283
CviKI_1 RGCY 4 cut(s) 147, 187, 271, 283
DdeI CTNAG 1 cut(s) 12
EciI GGCGGA 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 110
FaiI YATR 1 cut(s) 257
FauI CCCGC 2 cut(s) 315, 332
FokI GGATG 1 cut(s) 44
GlaI GCGC 2 cut(s) 321, 346
HapII CCGG 2 cut(s) 29, 331
HgaI GACGC 1 cut(s) 336
HhaI GCGC 2 cut(s) 322, 347
Hin6I GCGC 2 cut(s) 320, 345
HinP1I GCGC 2 cut(s) 320, 345
HinfI GANTC 1 cut(s) 104
HpaII CCGG 2 cut(s) 29, 331
HphI GGTGA 2 cut(s) 79, 109
Hpy188I TCNGA 2 cut(s) 172, 223
Hpy188III TCNNGA 2 cut(s) 29, 108
Hpy99I CGWCG 1 cut(s) 352
HpyAV CCTTC 6 cut(s) 44, 48, 67, 94, 218, 227
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 291
HpyF10VI GCNNNNNNNGC 1 cut(s) 336
HpyF3I CTNAG 1 cut(s) 12
HspAI GCGC 2 cut(s) 320, 345
Kpn2I TCCGGA 1 cut(s) 28
KroI GCCGGC 1 cut(s) 330
KroNI GCCGGC 1 cut(s) 332
KspI CCGCGG 1 cut(s) 340
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 7 cut(s) 42, 93, 134, 161, 269, 293, 344
LweI GCATC 1 cut(s) 176
MboII GAAGA 5 cut(s) 17, 48, 82, 153, 201
MluCI AATT 3 cut(s) 77, 152, 178
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 2 cut(s) 19, 88
MroI TCCGGA 1 cut(s) 28
MroNI GCCGGC 1 cut(s) 330
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 2 cut(s) 283, 339
MspI CCGG 2 cut(s) 29, 331
MvnI CGCG 3 cut(s) 322, 339, 347
MwoI GCNNNNNNNGC 1 cut(s) 336
NaeI GCCGGC 1 cut(s) 332
NgoMIV GCCGGC 1 cut(s) 330
NlaIV GGNNCC 3 cut(s) 112, 272, 335
NspV TTCGAA 1 cut(s) 87
PdiI GCCGGC 1 cut(s) 332
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 112, 272, 335
PspPI GGNCC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 283
SacII CCGCGG 1 cut(s) 340
SaqAI TTAA 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 110
SchI GAGTC 1 cut(s) 113
SetI ASST 2 cut(s) 99, 285
SfaNI GCATC 1 cut(s) 176
Sfr303I CCGCGG 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 87
SgrBI CCGCGG 1 cut(s) 340
SinI GGWCC 1 cut(s) 110
Sse9I AATT 3 cut(s) 77, 152, 178
SsiI CCGC 4 cut(s) 247, 322, 337, 339
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 77, 152, 178
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
VpaK11BI GGWCC 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.