Rroxscaffold_6G00411400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0004835
Physical Location & Seq
Reverse (-)
33899587 .. 33903786
4200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00411400.1

Sequence Viewer

Length: 315 bp
ATGGAAGGGACAGCTCACCCTACCTGGAATTGGAGTGCTCATCCACATTCGGGTTCGTTCCCGACTTTCGATCATTTTTTCGAATCCAAACTAAGCGAGCAATCACCGGGAAGTTGGGAGAAGCACGGGGTTTTGCTAAAGCGTGACTTTAGTTTCGCCGGGTTGCAAGGGCGTTACCCTTGCTTCGCTGGTAGTATCGATGGCGGTAGCACTAGCGGTCGGCTCTTGGAGAGACTAGGACCGGAAGCACGGTCGCCCGGTTTCAACGAGGTTGAAGGTTTGCTCCGGGGGAGTCTTTGTAATCGCCGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

6.96

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 204, 216
AfiI CCNNNNNNNGG 2 cut(s) 30, 50
AgsI TTSAA 2 cut(s) 265, 275
AjnI CCWGG 1 cut(s) 23
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 226
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspS9I GGNCC 1 cut(s) 239
AsuC2I CCSGG 4 cut(s) 108, 160, 258, 287
AsuHPI GGTGA 2 cut(s) 8, 96
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 4 cut(s) 108, 160, 258, 287
BcoDI GTCTC 1 cut(s) 226
BfaI CTAG 2 cut(s) 213, 236
Bme1390I CCNGG 5 cut(s) 25, 108, 160, 258, 287
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 239
BmrFI CCNGG 5 cut(s) 25, 108, 160, 258, 287
Bpu14I TTCGAA 1 cut(s) 81
BpuMI CCSGG 4 cut(s) 108, 160, 258, 287
Bsa29I ATCGAT 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 283, 313
Bsc4I CCNNNNNNNGG 2 cut(s) 30, 50
BseBI CCWGG 1 cut(s) 25
BseCI ATCGAT 1 cut(s) 198
BseDI CCNNGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 40
BseLI CCNNNNNNNGG 2 cut(s) 30, 50
Bsh1285I CGRYCG 2 cut(s) 220, 254
BshVI ATCGAT 1 cut(s) 198
BsiEI CGRYCG 2 cut(s) 220, 254
BsiHKAI GWGCWC 1 cut(s) 40
BsiSI CCGG 6 cut(s) 107, 159, 242, 258, 286, 307
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 2 cut(s) 30, 50
BsmAI GTCTC 1 cut(s) 226
BsmFI GGGAC 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 1 cut(s) 70
BspACI CCGC 2 cut(s) 204, 216
BspDI ATCGAT 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 81
BssECI CCNNGG 1 cut(s) 286
BssMI GATC 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 252
BstBI TTCGAA 1 cut(s) 81
BstC8I GCNNGC 1 cut(s) 98
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 1 cut(s) 70
BstMCI CGRYCG 2 cut(s) 220, 254
BstNI CCWGG 1 cut(s) 25
BstSCI CCNGG 5 cut(s) 23, 106, 158, 256, 285
Bsu15I ATCGAT 1 cut(s) 198
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 239
ClaI ATCGAT 1 cut(s) 198
CviJI RGCY 2 cut(s) 14, 223
CviKI_1 RGCY 2 cut(s) 14, 223
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 23
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 22
FokI GGATG 1 cut(s) 27
FspBI CTAG 2 cut(s) 213, 236
HapII CCGG 6 cut(s) 107, 159, 242, 258, 286, 307
HinfI GANTC 2 cut(s) 83, 292
HpaII CCGG 6 cut(s) 107, 159, 242, 258, 286, 307
HphI GGTGA 2 cut(s) 8, 96
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 269
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 92
Kzo9I GATC 1 cut(s) 70
LmnI GCTCC 1 cut(s) 288
LpnPI CCDG 8 cut(s) 10, 37, 120, 172, 174, 255, 271, 299
MaeI CTAG 2 cut(s) 213, 236
MaeIII GTNAC 2 cut(s) 143, 173
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 28, 310
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 1 cut(s) 262
MspI CCGG 6 cut(s) 107, 159, 242, 258, 286, 307
MspR9I CCNGG 5 cut(s) 25, 108, 160, 258, 287
MvaI CCWGG 1 cut(s) 25
NciI CCSGG 4 cut(s) 108, 160, 258, 287
NdeII GATC 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 143
NspV TTCGAA 1 cut(s) 81
PfeI GAWTC 1 cut(s) 83
PleI GAGTC 1 cut(s) 300
PpsI GAGTC 1 cut(s) 300
Psp6I CCWGG 1 cut(s) 23
PspGI CCWGG 1 cut(s) 23
PspPI GGNCC 1 cut(s) 239
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 239
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 5 cut(s) 25, 108, 160, 258, 287
SduI GDGCHC 1 cut(s) 40
SetI ASST 4 cut(s) 16, 26, 273, 280
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 1 cut(s) 239
Sse9I AATT 2 cut(s) 28, 310
SsiI CCGC 2 cut(s) 204, 216
SspMI CTAG 2 cut(s) 213, 236
StyD4I CCNGG 5 cut(s) 23, 106, 158, 256, 285
TaaI ACNGT 1 cut(s) 252
TaqI TCGA 3 cut(s) 69, 81, 198
TasI AATT 2 cut(s) 28, 310
TfiI GAWTC 1 cut(s) 83
TseFI GTSAC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 143
VpaK11BI GGWCC 1 cut(s) 239
XspI CTAG 2 cut(s) 213, 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.