Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

32008330 .. 32016442

Gene Structure 8113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00409490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCGGTTGTTGGCCGGTTGAGCAAGAAGAGCAATGGCAACTTGCTGCCCTGGTTGAGCAACGGCGGGAATGTGGTCGTTCGATCAAAGTTGAGCAGAAGCACCAATGCGGTGTTGACCTGGTTGAGCCGTACAATGTTGCGCGAGCGTGCAAAGCACCGCGGGGTGCGTCGTTGGGGTAGTCCCGTGACCGACTTCTTCTTCAAGCGGCGTGGACGAGGAGAGCACCAACCTCGTCACGGGGTTGAGCGAGCAATCACCGGGAAGTTCGAGAAAGCACGGGTTTTGCTAAAGCGTATCTTTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGCCGGAAGTAACGGTGGCGGTTGTGCTTGCGGTCGGCTCCCGGGGAGACCGGGACCGGAAGTACGGTCGCCGGTTGATCCGGTGAGGGCGACGGTCGGCTCGCGAGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

150

Amino Acids

16.51

Weight (kDa)

11.9

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	144, 162, 442
AciI	CCGC	8 cut(s)	5, 66, 110, 160, 162, 208, 357, 369
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	13
AfaI	GTAC	2 cut(s)	133, 402
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	50, 119
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	379, 441
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	379
AoxI	GGCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	5 cut(s)	262, 313, 380, 381, 390
AsuHPI	GGTGA	2 cut(s)	250, 433
AvaI	CYCGRG	1 cut(s)	379
AvaII	GGWCC	1 cut(s)	392
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	1 cut(s)	33
BceAI	ACGGC	2 cut(s)	79, 114
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BciT130I	CCWGG	2 cut(s)	52, 121
BcnI	CCSGG	5 cut(s)	262, 313, 380, 381, 390
BcoDI	GTCTC	2 cut(s)	379, 441
BfaI	CTAG	1 cut(s)	451
BisI	GCNGC	2 cut(s)	47, 209
BlsI	GCNGC	2 cut(s)	48, 210
Bme1390I	CCNGG	7 cut(s)	52, 121, 262, 313, 380, 381, 390
Bme18I	GGWCC	1 cut(s)	392
BmeT110I	CYCGRG	1 cut(s)	379
BmgT120I	GGNCC	1 cut(s)	392
BmiI	GGNNCC	2 cut(s)	377, 393
BmrFI	CCNGG	7 cut(s)	52, 121, 262, 313, 380, 381, 390
BpuMI	CCSGG	5 cut(s)	262, 313, 380, 381, 390
BsaI	GGTCTC	1 cut(s)	379
BsaJI	CCNNGG	4 cut(s)	50, 160, 379, 380
BsaWI	WCCGGW	2 cut(s)	394, 418
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse118I	RCCGGY	2 cut(s)	15, 409
Bse3DI	GCAATG	1 cut(s)	40
BseBI	CCWGG	2 cut(s)	52, 121
BseDI	CCNNGG	4 cut(s)	50, 160, 379, 380
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMI	GCAATG	1 cut(s)	40
BseRI	GAGGAG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	33
Bsh1236I	CGCG	3 cut(s)	144, 162, 442
Bsh1285I	CGRYCG	3 cut(s)	373, 407, 435
BshFI	GGCC	1 cut(s)	15
BsiEI	CGRYCG	3 cut(s)	373, 407, 435
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	379
BsiSI	CCGG	9 cut(s)	16, 261, 312, 342, 380, 389, 395, 410, 419
BslFI	GGGAC	2 cut(s)	168, 405
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	2 cut(s)	379, 441
BsmFI	GGGAC	2 cut(s)	168, 405
BsnI	GGCC	1 cut(s)	15
Bso31I	GGTCTC	1 cut(s)	379
BsoBI	CYCGRG	1 cut(s)	379
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	83, 415
Bsp68I	TCGCGA	1 cut(s)	442
BspACI	CCGC	8 cut(s)	5, 66, 110, 160, 162, 208, 357, 369
BspANI	GGCC	1 cut(s)	15
BspFNI	CGCG	3 cut(s)	144, 162, 442
BspLI	GGNNCC	2 cut(s)	377, 393
BspPI	GGATC	1 cut(s)	410
BspQI	GCTCTTC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	379
BsrDI	GCAATG	1 cut(s)	40
BsrFI	RCCGGY	2 cut(s)	15, 409
BssAI	RCCGGY	2 cut(s)	15, 409
BssECI	CCNNGG	4 cut(s)	50, 160, 379, 380
BssMI	GATC	2 cut(s)	83, 415
Bst2UI	CCWGG	2 cut(s)	52, 121
Bst4CI	ACNGT	3 cut(s)	353, 405, 433
Bst6I	CTCTTC	1 cut(s)	23
BstC8I	GCNNGC	5 cut(s)	146, 150, 252, 367, 440
BstDSI	CCRYGG	1 cut(s)	160
BstFNI	CGCG	3 cut(s)	144, 162, 442
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	2 cut(s)	86, 418
BstMAI	GTCTC	2 cut(s)	379, 441
BstMBI	GATC	2 cut(s)	83, 415
BstMCI	CGRYCG	3 cut(s)	373, 407, 435
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 30, 154
BstNI	CCWGG	2 cut(s)	52, 121
BstSCI	CCNGG	7 cut(s)	50, 119, 260, 311, 378, 379, 388
BstUI	CGCG	3 cut(s)	144, 162, 442
BstV1I	GCAGC	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	15
BtgI	CCRYGG	1 cut(s)	160
BtuMI	TCGCGA	1 cut(s)	442
Cac8I	GCNNGC	5 cut(s)	146, 150, 252, 367, 440
CfoI	GCGC	1 cut(s)	144
Cfr10I	RCCGGY	2 cut(s)	15, 409
Cfr13I	GGNCC	1 cut(s)	392
Cfr42I	CCGCGG	1 cut(s)	163
Cfr9I	CCCGGG	1 cut(s)	379
CseI	GACGC	1 cut(s)	158
CsiI	ACCWGGT	1 cut(s)	119
Csp6I	GTAC	2 cut(s)	132, 401
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviJI	RGCY	5 cut(s)	15, 129, 306, 376, 438
CviKI_1	RGCY	5 cut(s)	15, 129, 306, 376, 438
CviQI	GTAC	2 cut(s)	132, 401
DpnI	GATC	2 cut(s)	85, 417
DpnII	GATC	2 cut(s)	83, 415
EaeI	YGGCCR	1 cut(s)	13
Eam1104I	CTCTTC	1 cut(s)	23
EarI	CTCTTC	1 cut(s)	23
Eco31I	GGTCTC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	392
Eco88I	CYCGRG	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	50, 119
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	2 cut(s)	168, 405
FauI	CCCGC	2 cut(s)	59, 155
Fnu4HI	GCNGC	2 cut(s)	47, 209
Fsp4HI	GCNGC	2 cut(s)	47, 209
FspBI	CTAG	1 cut(s)	451
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	2 cut(s)	47, 209
HaeIII	GGCC	1 cut(s)	15
HapII	CCGG	9 cut(s)	16, 261, 312, 342, 380, 389, 395, 410, 419
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HpaII	CCGG	9 cut(s)	16, 261, 312, 342, 380, 389, 395, 410, 419
HphI	GGTGA	2 cut(s)	250, 433
Hpy166II	GTNNAC	2 cut(s)	117, 215
Hpy188III	TCNNGA	2 cut(s)	271, 441
Hpy8I	GTNNAC	2 cut(s)	117, 215
Hpy99I	CGWCG	2 cut(s)	174, 433
HpyCH4III	ACNGT	3 cut(s)	353, 405, 433
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 30, 154
HspAI	GCGC	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	83, 415
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	1 cut(s)	33
MabI	ACCWGGT	1 cut(s)	119
MaeI	CTAG	1 cut(s)	451
MaeIII	GTNAC	4 cut(s)	187, 236, 326, 347
MalI	GATC	2 cut(s)	85, 417
MboI	GATC	2 cut(s)	83, 415
MboII	GAAGA	3 cut(s)	40, 190, 193
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	5 cut(s)	212, 243, 314, 417, 437
MspA1I	CMGCKG	1 cut(s)	162
MspI	CCGG	9 cut(s)	16, 261, 312, 342, 380, 389, 395, 410, 419
MspR9I	CCNGG	7 cut(s)	52, 121, 262, 313, 380, 381, 390
MvaI	CCWGG	2 cut(s)	52, 121
MvnI	CGCG	3 cut(s)	144, 162, 442
MwoI	GCNNNNNNNGC	3 cut(s)	21, 30, 154
NciI	CCSGG	5 cut(s)	262, 313, 380, 381, 390
NdeII	GATC	2 cut(s)	83, 415
NlaIV	GGNNCC	2 cut(s)	377, 393
NmuCI	GTSAC	2 cut(s)	187, 236
NruI	TCGCGA	1 cut(s)	442
PciSI	GCTCTTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	48, 210
Psp6I	CCWGG	2 cut(s)	50, 119
PspGI	CCWGG	2 cut(s)	50, 119
PspN4I	GGNNCC	2 cut(s)	377, 393
PspPI	GGNCC	1 cut(s)	392
RruI	TCGCGA	1 cut(s)	442
RsaI	GTAC	2 cut(s)	133, 402
RsaNI	GTAC	2 cut(s)	132, 401
SacII	CCGCGG	1 cut(s)	163
SapI	GCTCTTC	1 cut(s)	23
SatI	GCNGC	2 cut(s)	47, 209
Sau3AI	GATC	2 cut(s)	83, 415
Sau96I	GGNCC	1 cut(s)	392
ScrFI	CCNGG	7 cut(s)	52, 121, 262, 313, 380, 381, 390
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	3 cut(s)	122, 235, 308
SexAI	ACCWGGT	1 cut(s)	119
Sfr303I	CCGCGG	1 cut(s)	163
SgrBI	CCGCGG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	392
SmaI	CCCGGG	1 cut(s)	381
SsiI	CCGC	8 cut(s)	5, 66, 110, 160, 162, 208, 357, 369
SspMI	CTAG	1 cut(s)	451
StyD4I	CCNGG	7 cut(s)	50, 119, 260, 311, 378, 379, 388
TaaI	ACNGT	3 cut(s)	353, 405, 433
TaqI	TCGA	2 cut(s)	82, 270
TaqII	GACCGA	1 cut(s)	206
TauI	GCSGC	1 cut(s)	211
TseFI	GTSAC	2 cut(s)	187, 236
TseI	GCWGC	1 cut(s)	46
Tsp45I	GTSAC	2 cut(s)	187, 236
TspMI	CCCGGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	392
XmaI	CCCGGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.