Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

21349826 .. 21351691

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCGTGGACTACTCTGTCCGATACTGCGTGCCGTGCAGACCGTGGGGTGCGGTCGTCGGGGAGTCCCTTGACCGACTTCTTCTTCAAGCTTTGTGGACGAGGAGAGCACCAACCTCGCCACAAGACTAGCGAGCAATCACCGGGAAGTTGGGAGAAGCACGGGGTTTTGCTAAAGCGTGACTTTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGGCCGGCGGTATATCGGTGGCGGTAGCACCGGCGGTCGGCTCTTGGAGAGACTAGGACCGGAAGCACGGTCGCCGGGTTGGTCCGGTGATGCGCGGTCGGCTCTTGGAGAGACTAGGACCGGCGCGCAGTCACCGGGTTTCAACAAGGTTGAAGGTTTGCTCCGGGAAGGCTTTGTAATCGCCGGGATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

14.96

Weight (kDa)

9.92

Isoelectric Point (pI)

51.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccII	CGCG	2 cut(s)	316, 347
AciI	CCGC	5 cut(s)	52, 229, 243, 255, 316
AcoI	YGGCCR	1 cut(s)	223
AfiI	CCNNNNNNNGG	2 cut(s)	221, 258
AgsI	TTSAA	3 cut(s)	88, 364, 374
AluBI	AGCT	2 cut(s)	91, 189
AluI	AGCT	2 cut(s)	91, 189
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	265, 326
AoxI	GGCC	1 cut(s)	223
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AspLEI	GCGC	3 cut(s)	316, 347, 349
AspS9I	GGNCC	3 cut(s)	278, 303, 339
AsuC2I	CCSGG	6 cut(s)	144, 196, 297, 357, 386, 406
AsuHPI	GGTGA	3 cut(s)	132, 320, 345
AvaII	GGWCC	3 cut(s)	278, 303, 339
Bbv12I	GWGCWC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	18
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BcnI	CCSGG	6 cut(s)	144, 196, 297, 357, 386, 406
BcoDI	GTCTC	2 cut(s)	265, 326
BfaI	CTAG	3 cut(s)	129, 275, 336
Bme1390I	CCNGG	6 cut(s)	144, 196, 297, 357, 386, 406
Bme18I	GGWCC	3 cut(s)	278, 303, 339
BmgT120I	GGNCC	3 cut(s)	278, 303, 339
BmrFI	CCNGG	6 cut(s)	144, 196, 297, 357, 386, 406
BmsI	GCATC	1 cut(s)	301
BpuMI	CCSGG	6 cut(s)	144, 196, 297, 357, 386, 406
BsaJI	CCNNGG	1 cut(s)	43
BsaWI	WCCGGW	2 cut(s)	280, 305
Bsc4I	CCNNNNNNNGG	2 cut(s)	221, 258
Bse118I	RCCGGY	3 cut(s)	225, 251, 341
BseDI	CCNNGG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	221, 258
BsePI	GCGCGC	1 cut(s)	345
BseRI	GAGGAG	1 cut(s)	117
BseX3I	CGGCCG	1 cut(s)	223
BsgI	GTGCAG	1 cut(s)	57
Bsh1236I	CGCG	2 cut(s)	316, 347
Bsh1285I	CGRYCG	5 cut(s)	56, 226, 259, 293, 320
BshFI	GGCC	1 cut(s)	225
BsiEI	CGRYCG	5 cut(s)	56, 226, 259, 293, 320
BsiHKAI	GWGCWC	1 cut(s)	111
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	221, 258
BsmAI	GTCTC	2 cut(s)	265, 326
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	225
Bsp1286I	GDGCHC	1 cut(s)	111
BspACI	CCGC	5 cut(s)	52, 229, 243, 255, 316
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	2 cut(s)	316, 347
BsrFI	RCCGGY	3 cut(s)	225, 251, 341
BssAI	RCCGGY	3 cut(s)	225, 251, 341
BssECI	CCNNGG	1 cut(s)	43
BssHII	GCGCGC	1 cut(s)	345
Bst4CI	ACNGT	2 cut(s)	44, 291
BstC8I	GCNNGC	4 cut(s)	31, 134, 227, 347
BstDSI	CCRYGG	1 cut(s)	43
BstFNI	CGCG	2 cut(s)	316, 347
BstHHI	GCGC	3 cut(s)	316, 347, 349
BstMAI	GTCTC	2 cut(s)	265, 326
BstMCI	CGRYCG	5 cut(s)	56, 226, 259, 293, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 320
BstSCI	CCNGG	6 cut(s)	142, 194, 295, 355, 384, 404
BstUI	CGCG	2 cut(s)	316, 347
BstZI	CGGCCG	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	31, 134, 227, 347
CfoI	GCGC	3 cut(s)	316, 347, 349
Cfr10I	RCCGGY	3 cut(s)	225, 251, 341
Cfr13I	GGNCC	3 cut(s)	278, 303, 339
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviJI	RGCY	6 cut(s)	91, 189, 225, 262, 323, 393
CviKI_1	RGCY	6 cut(s)	91, 189, 225, 262, 323, 393
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	223
EagI	CGGCCG	1 cut(s)	223
EclXI	CGGCCG	1 cut(s)	223
Eco47I	GGWCC	3 cut(s)	278, 303, 339
Eco52I	CGGCCG	1 cut(s)	223
FaiI	YATR	1 cut(s)	234
FalI	AAGNNNNNCTT	2 cut(s)	167, 199
FaqI	GGGAC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	129, 275, 336
GlaI	GCGC	3 cut(s)	315, 346, 348
HaeIII	GGCC	1 cut(s)	225
HhaI	GCGC	3 cut(s)	316, 347, 349
Hin6I	GCGC	3 cut(s)	314, 345, 347
HinP1I	GCGC	3 cut(s)	314, 345, 347
HindIII	AAGCTT	1 cut(s)	89
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	3 cut(s)	132, 320, 345
Hpy166II	GTNNAC	2 cut(s)	9, 98
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	2 cut(s)	9, 98
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	368, 383
HpyCH4III	ACNGT	2 cut(s)	44, 291
HpyCH4V	TGCA	1 cut(s)	38
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 320
HspAI	GCGC	3 cut(s)	314, 345, 347
KroI	GCCGGC	1 cut(s)	225
KroNI	GCCGGC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	387
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	3 cut(s)	129, 275, 336
MaeIII	GTNAC	3 cut(s)	179, 209, 351
MboII	GAAGA	2 cut(s)	73, 76
MhlI	GDGCHC	1 cut(s)	111
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	3 cut(s)	95, 126, 197
MroNI	GCCGGC	1 cut(s)	225
MspR9I	CCNGG	6 cut(s)	144, 196, 297, 357, 386, 406
MvnI	CGCG	2 cut(s)	316, 347
MwoI	GCNNNNNNNGC	2 cut(s)	35, 320
NaeI	GCCGGC	1 cut(s)	227
NciI	CCSGG	6 cut(s)	144, 196, 297, 357, 386, 406
NgoMIV	GCCGGC	1 cut(s)	225
NmuCI	GTSAC	2 cut(s)	179, 351
PauI	GCGCGC	1 cut(s)	345
PdiI	GCCGGC	1 cut(s)	227
PfoI	TCCNGGA	1 cut(s)	384
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PspPI	GGNCC	3 cut(s)	278, 303, 339
PteI	GCGCGC	1 cut(s)	345
Sau96I	GGNCC	3 cut(s)	278, 303, 339
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	6 cut(s)	144, 196, 297, 357, 386, 406
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	5 cut(s)	93, 118, 191, 372, 379
SfaNI	GCATC	1 cut(s)	301
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	3 cut(s)	278, 303, 339
SsiI	CCGC	5 cut(s)	52, 229, 243, 255, 316
SspMI	CTAG	3 cut(s)	129, 275, 336
StyD4I	CCNGG	6 cut(s)	142, 194, 295, 355, 384, 404
TaaI	ACNGT	2 cut(s)	44, 291
TaqII	GACCGA	1 cut(s)	89
TseFI	GTSAC	2 cut(s)	179, 351
Tsp45I	GTSAC	2 cut(s)	179, 351
VpaK11BI	GGWCC	3 cut(s)	278, 303, 339
XspI	CTAG	3 cut(s)	129, 275, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.