Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

35835129 .. 35839371

Gene Structure 4243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00356520.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGCCGGAAGTGGTTTTCCTACGGGTCACCGATCGGAGGCCGGGTGGCTTCGATCTCCGGCCGGAGGCAGCGGCGGAGCAAAGAGGCACCGGAGGGAGGCTGGGCTTGGAGCGGCTATCACGGAGAGGGGCGGGTCGTGGCCGGAGGACGCCGGAAGTGGCCGTTCCGGCCGGGTCGGGCGTACCAAAGACCGTGAGGTGCGTCGTCGGGGAGTCCTTTGACCTCGACTTCTTCTTCAAGCGTTGTGGACGAGGAGAGCACCAACCTCGCCACAAGACTAAGCGAGCAATCACCGGGAAGTTGGGAGAAGCACGGGGTTTGCTAAAGTGTGACTTTAGCTTCGCTGGGTTGCGAGGGCGTTACCCTTGCTTCGCTGGTAGTATCGGTGGCGGTAGCACCGGCGGTCGGCTCTTGGAGAGACTAGGATTGGAAGTACGGTCACCGGTTGATCCGGTGATGCCGACGCCGCTCTTGGAGAGACCGGGACCGGCGCGCGGTCACCGGGTTTCAAAGAGGTCGAAGGTTTGCTCCAGGGAGGCTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.62

Weight (kDa)

11.17

Isoelectric Point (pI)

52.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	2 cut(s)	112, 469
AccII	CGCG	2 cut(s)	493, 495
AciI	CCGC	8 cut(s)	71, 74, 112, 131, 390, 402, 467, 495
AclWI	GGATC	1 cut(s)	443
AcoI	YGGCCR	4 cut(s)	59, 139, 159, 168
AcyI	GRCGYC	2 cut(s)	149, 464
AfaI	GTAC	2 cut(s)	183, 435
AfiI	CCNNNNNNNGG	5 cut(s)	36, 64, 96, 405, 494
AgeI	ACCGGT	1 cut(s)	442
AgsI	TTSAA	2 cut(s)	238, 510
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	412, 472
AlwI	GGATC	1 cut(s)	443
AoxI	GGCC	5 cut(s)	38, 59, 139, 159, 168
ApeKI	GCWGC	1 cut(s)	68
ArsI	GACNNNNNNTTYG	2 cut(s)	323, 355
AsiGI	ACCGGT	1 cut(s)	442
AspLEI	GCGC	2 cut(s)	493, 495
AspS9I	GGNCC	1 cut(s)	485
AsuC2I	CCSGG	5 cut(s)	42, 172, 295, 483, 503
AsuHPI	GGTGA	5 cut(s)	19, 283, 432, 466, 491
AvaII	GGWCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	146
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	532
BcnI	CCSGG	5 cut(s)	42, 172, 295, 483, 503
BcoDI	GTCTC	2 cut(s)	412, 472
BfaI	CTAG	1 cut(s)	422
BglI	GCCNNNNNGGC	1 cut(s)	167
BisI	GCNGC	4 cut(s)	69, 72, 113, 467
BlsI	GCNGC	4 cut(s)	70, 73, 114, 468
Bme1390I	CCNGG	6 cut(s)	42, 172, 295, 483, 503, 532
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	88, 486
BmrFI	CCNGG	6 cut(s)	42, 172, 295, 483, 503, 532
BmsI	GCATC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	514
BpuMI	CCSGG	5 cut(s)	42, 172, 295, 483, 503
BsaHI	GRCGYC	2 cut(s)	149, 464
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	531
BsaWI	WCCGGW	3 cut(s)	89, 442, 451
BsaXI	ACNNNNNCTCC	3 cut(s)	28, 58, 527
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 64, 96, 405, 494
Bse118I	RCCGGY	3 cut(s)	398, 442, 487
BseBI	CCWGG	1 cut(s)	532
BseDI	CCNNGG	1 cut(s)	531
BseLI	CCNNNNNNNGG	5 cut(s)	36, 64, 96, 405, 494
BsePI	GCGCGC	1 cut(s)	491
BseRI	GAGGAG	1 cut(s)	267
BseX3I	CGGCCG	2 cut(s)	59, 168
BseXI	GCAGC	1 cut(s)	80
BseYI	CCCAGC	2 cut(s)	100, 344
Bsh1236I	CGCG	2 cut(s)	493, 495
Bsh1285I	CGRYCG	4 cut(s)	34, 62, 171, 406
BshFI	GGCC	5 cut(s)	40, 61, 141, 161, 170
BshNI	GGYRCC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	442
BsiEI	CGRYCG	4 cut(s)	34, 62, 171, 406
BsiHKAI	GWGCWC	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	5 cut(s)	36, 64, 96, 405, 494
BsmAI	GTCTC	2 cut(s)	412, 472
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	5 cut(s)	40, 61, 141, 161, 170
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	31, 52, 448
BspACI	CCGC	8 cut(s)	71, 74, 112, 131, 390, 402, 467, 495
BspANI	GGCC	5 cut(s)	40, 61, 141, 161, 170
BspFNI	CGCG	2 cut(s)	493, 495
BspLI	GGNNCC	2 cut(s)	88, 486
BspPI	GGATC	1 cut(s)	443
BspT107I	GGYRCC	1 cut(s)	86
BspTNI	GGTCTC	1 cut(s)	472
BsrBI	CCGCTC	2 cut(s)	112, 469
BsrFI	RCCGGY	3 cut(s)	398, 442, 487
BssAI	RCCGGY	3 cut(s)	398, 442, 487
BssECI	CCNNGG	1 cut(s)	531
BssHII	GCGCGC	1 cut(s)	491
BssMI	GATC	3 cut(s)	31, 52, 448
BssNI	GRCGYC	2 cut(s)	149, 464
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	193, 438
BstACI	GRCGYC	2 cut(s)	149, 464
BstC8I	GCNNGC	2 cut(s)	285, 493
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	3 cut(s)	25, 438, 497
BstFNI	CGCG	2 cut(s)	493, 495
BstHHI	GCGC	2 cut(s)	493, 495
BstKTI	GATC	3 cut(s)	34, 55, 451
BstMAI	GTCTC	2 cut(s)	412, 472
BstMBI	GATC	3 cut(s)	31, 52, 448
BstMCI	CGRYCG	4 cut(s)	34, 62, 171, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 466
BstNI	CCWGG	1 cut(s)	532
BstPI	GGTNACC	3 cut(s)	25, 438, 497
BstSCI	CCNGG	6 cut(s)	40, 170, 293, 481, 501, 530
BstUI	CGCG	2 cut(s)	493, 495
BstV1I	GCAGC	1 cut(s)	80
BstZI	CGGCCG	2 cut(s)	59, 168
BsuRI	GGCC	5 cut(s)	40, 61, 141, 161, 170
Cac8I	GCNNGC	2 cut(s)	285, 493
CfoI	GCGC	2 cut(s)	493, 495
Cfr10I	RCCGGY	3 cut(s)	398, 442, 487
Cfr13I	GGNCC	1 cut(s)	485
CseI	GACGC	3 cut(s)	157, 190, 472
Csp6I	GTAC	2 cut(s)	182, 434
CspAI	ACCGGT	1 cut(s)	442
CspCI	CAANNNNNGTGG	2 cut(s)	226, 261
CviQI	GTAC	2 cut(s)	182, 434
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	3 cut(s)	33, 54, 450
DpnII	GATC	3 cut(s)	31, 52, 448
EaeI	YGGCCR	4 cut(s)	59, 139, 159, 168
EagI	CGGCCG	2 cut(s)	59, 168
EciI	GGCGGA	1 cut(s)	89
EclXI	CGGCCG	2 cut(s)	59, 168
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	485
Eco52I	CGGCCG	2 cut(s)	59, 168
Eco91I	GGTNACC	3 cut(s)	25, 438, 497
EcoO65I	GGTNACC	3 cut(s)	25, 438, 497
EcoRII	CCWGG	1 cut(s)	530
FalI	AAGNNNNNCTT	2 cut(s)	317, 349
FaqI	GGGAC	1 cut(s)	498
FauI	CCCGC	1 cut(s)	124
Fnu4HI	GCNGC	4 cut(s)	69, 72, 113, 467
Fsp4HI	GCNGC	4 cut(s)	69, 72, 113, 467
FspBI	CTAG	1 cut(s)	422
GlaI	GCGC	2 cut(s)	492, 494
GluI	GCNGC	4 cut(s)	69, 72, 113, 467
GsaI	CCCAGC	2 cut(s)	104, 348
GsuI	CTGGAG	1 cut(s)	514
HaeIII	GGCC	5 cut(s)	40, 61, 141, 161, 170
HgaI	GACGC	3 cut(s)	157, 190, 472
HhaI	GCGC	2 cut(s)	493, 495
Hin1I	GRCGYC	2 cut(s)	149, 464
Hin6I	GCGC	2 cut(s)	491, 493
HinP1I	GCGC	2 cut(s)	491, 493
HinfI	GANTC	1 cut(s)	212
HphI	GGTGA	5 cut(s)	19, 283, 432, 466, 491
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	3 cut(s)	206, 209, 466
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	193, 438
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 466
HpyF3I	CTNAG	1 cut(s)	279
Hsp92I	GRCGYC	2 cut(s)	149, 464
HspAI	GCGC	2 cut(s)	491, 493
Kzo9I	GATC	3 cut(s)	31, 52, 448
LmnI	GCTCC	3 cut(s)	76, 109, 533
Lsp1109I	GCAGC	1 cut(s)	80
LweI	GCATC	1 cut(s)	447
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	5 cut(s)	25, 329, 359, 438, 497
MalI	GATC	3 cut(s)	33, 54, 450
MbiI	CCGCTC	2 cut(s)	112, 469
MboI	GATC	3 cut(s)	31, 52, 448
MboII	GAAGA	2 cut(s)	223, 226
MhlI	GDGCHC	1 cut(s)	261
MlyI	GAGTC	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	71
MspR9I	CCNGG	6 cut(s)	42, 172, 295, 483, 503, 532
MvaI	CCWGG	1 cut(s)	532
MvnI	CGCG	2 cut(s)	493, 495
MwoI	GCNNNNNNNGC	2 cut(s)	167, 466
NciI	CCSGG	5 cut(s)	42, 172, 295, 483, 503
NdeII	GATC	3 cut(s)	31, 52, 448
NlaIV	GGNNCC	2 cut(s)	88, 486
NmuCI	GTSAC	4 cut(s)	25, 329, 438, 497
PauI	GCGCGC	1 cut(s)	491
PinAI	ACCGGT	1 cut(s)	442
PkrI	GCNGC	4 cut(s)	70, 73, 114, 468
Ple19I	CGATCG	1 cut(s)	34
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	1 cut(s)	530
PspEI	GGTNACC	3 cut(s)	25, 438, 497
PspFI	CCCAGC	2 cut(s)	100, 344
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	88, 486
PspPI	GGNCC	1 cut(s)	485
PteI	GCGCGC	1 cut(s)	491
PvuI	CGATCG	1 cut(s)	34
RsaI	GTAC	2 cut(s)	183, 435
RsaNI	GTAC	2 cut(s)	182, 434
SatI	GCNGC	4 cut(s)	69, 72, 113, 467
Sau3AI	GATC	3 cut(s)	31, 52, 448
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	6 cut(s)	42, 172, 295, 483, 503, 532
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	6 cut(s)	200, 225, 268, 341, 518, 525
SfaNI	GCATC	1 cut(s)	447
SfiI	GGCCNNNNNGGCC	1 cut(s)	167
SgrAI	CRCCGGYG	1 cut(s)	398
SinI	GGWCC	1 cut(s)	485
SsiI	CCGC	8 cut(s)	71, 74, 112, 131, 390, 402, 467, 495
SspMI	CTAG	1 cut(s)	422
StyD4I	CCNGG	6 cut(s)	40, 170, 293, 481, 501, 530
TaaI	ACNGT	2 cut(s)	193, 438
TaqI	TCGA	3 cut(s)	51, 225, 518
TauI	GCSGC	3 cut(s)	74, 115, 469
TseFI	GTSAC	4 cut(s)	25, 329, 438, 497
TseI	GCWGC	1 cut(s)	68
Tsp45I	GTSAC	4 cut(s)	25, 329, 438, 497
TspGWI	ACGGA	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	485
XspI	CTAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.