Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000517.1

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

27185 .. 28640

Gene Structure 1456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000517.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

atgagagctctggcgaaggagaaaaagcgagcagagaaacagcggaggatggagctagatgaagccatgggacagatgatgagccatgggacgttgactatgtgttgtagactaagcagatcaatcactgggaagttggagagagcacgggttttgctaaagcgtgactttagttttgctgggttgcgacggcgttacccttgcttcgctggtagtatcggtggcagtaacactaacagtcggctcttggagagactaggactggaagcacggttgccgggttggtttggtggcgctgacagtctgctctcgaggagactgggactggaacgtggtcaccggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.94

Weight (kDa)

11.33

Isoelectric Point (pI)

48.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	109
AciI	CCGC	1 cut(s)	43
AgeI	ACCGGT	1 cut(s)	339
AluBI	AGCT	2 cut(s)	8, 55
AluI	AGCT	2 cut(s)	8, 55
Alw21I	GWGCWC	2 cut(s)	10, 148
Alw26I	GTCTC	2 cut(s)	247, 310
Ama87I	CYCGRG	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AsiGI	ACCGGT	1 cut(s)	339
AspLEI	GCGC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	279
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	310
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	10, 148
BccI	CCATC	1 cut(s)	43
BceAI	ACGGC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	279
BcoDI	GTCTC	2 cut(s)	247, 310
BfaI	CTAG	2 cut(s)	56, 257
BfoI	RGCGCY	1 cut(s)	297
Bme1390I	CCNGG	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	2 cut(s)	138, 329
BmuI	ACTGGG	2 cut(s)	138, 329
BpuMI	CCSGG	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	66, 85
BsaWI	WCCGGW	1 cut(s)	339
Bse118I	RCCGGY	1 cut(s)	339
Bse1I	ACTGG	4 cut(s)	133, 267, 324, 330
BseDI	CCNNGG	2 cut(s)	66, 85
BseGI	GGATG	1 cut(s)	54
BseNI	ACTGG	4 cut(s)	133, 267, 324, 330
BseRI	GAGGAG	1 cut(s)	328
BseYI	CCCAGC	1 cut(s)	179
BshTI	ACCGGT	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	10, 148
BsiHKCI	CYCGRG	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	278, 340
BslFI	GGGAC	3 cut(s)	84, 103, 336
BsmAI	GTCTC	2 cut(s)	247, 310
BsmFI	GGGAC	3 cut(s)	84, 103, 336
BsoBI	CYCGRG	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	10, 148
Bsp143I	GATC	1 cut(s)	119
Bsp19I	CCATGG	2 cut(s)	66, 85
BspACI	CCGC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	339
BsrI	ACTGG	4 cut(s)	133, 267, 324, 330
BssAI	RCCGGY	1 cut(s)	339
BssECI	CCNNGG	2 cut(s)	66, 85
BssMI	GATC	1 cut(s)	119
BssT1I	CCWWGG	2 cut(s)	66, 85
Bst4CI	ACNGT	3 cut(s)	239, 273, 302
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	113
BstDSI	CCRYGG	2 cut(s)	66, 85
BstEII	GGTNACC	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	54
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	1 cut(s)	122
BstMAI	GTCTC	2 cut(s)	247, 310
BstMBI	GATC	1 cut(s)	119
BstPI	GGTNACC	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	277
BtgI	CCRYGG	2 cut(s)	66, 85
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	339
CspAI	ACCGGT	1 cut(s)	339
CviAII	CATG	2 cut(s)	67, 86
CviJI	RGCY	5 cut(s)	8, 55, 65, 84, 244
CviKI_1	RGCY	5 cut(s)	8, 55, 65, 84, 244
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	121
DpnII	GATC	1 cut(s)	119
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	66, 85
Eco24I	GRGCYC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	310
Eco91I	GGTNACC	1 cut(s)	335
EcoICRI	GAGCTC	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	335
EcoT14I	CCWWGG	2 cut(s)	66, 85
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	66, 85
FaeI	CATG	2 cut(s)	70, 89
FaiI	YATR	3 cut(s)	68, 87, 101
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	3 cut(s)	84, 103, 336
FatI	CATG	2 cut(s)	66, 85
FblI	GTMKAC	1 cut(s)	109
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	1 cut(s)	10
FspBI	CTAG	2 cut(s)	56, 257
GlaI	GCGC	1 cut(s)	295
GsaI	CCCAGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	297
HapII	CCGG	2 cut(s)	278, 340
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	70, 89
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HpaII	CCGG	2 cut(s)	278, 340
HphI	GGTGA	1 cut(s)	329
Hpy166II	GTNNAC	2 cut(s)	96, 110
Hpy188III	TCNNGA	1 cut(s)	310
Hpy8I	GTNNAC	2 cut(s)	96, 110
Hpy99I	CGWCG	1 cut(s)	192
HpyAV	CCTTC	1 cut(s)	10
HpyCH4III	ACNGT	3 cut(s)	239, 273, 302
HpyCH4IV	ACGT	2 cut(s)	92, 331
HpyF3I	CTNAG	1 cut(s)	113
HpySE526I	ACGT	2 cut(s)	92, 331
Hsp92II	CATG	2 cut(s)	70, 89
HspAI	GCGC	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	114, 165, 195, 248, 291, 305, 311
MaeI	CTAG	2 cut(s)	56, 257
MaeII	ACGT	2 cut(s)	92, 331
MaeIII	GTNAC	4 cut(s)	164, 194, 227, 335
MalI	GATC	1 cut(s)	121
MboI	GATC	1 cut(s)	119
MhlI	GDGCHC	2 cut(s)	10, 148
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	2 cut(s)	39, 306
MspA1I	CMGCKG	1 cut(s)	43
MspI	CCGG	2 cut(s)	278, 340
MspR9I	CCNGG	1 cut(s)	279
NciI	CCSGG	1 cut(s)	279
NcoI	CCATGG	2 cut(s)	66, 85
NdeII	GATC	1 cut(s)	119
NlaIII	CATG	2 cut(s)	70, 89
NmuCI	GTSAC	2 cut(s)	164, 335
PaeR7I	CTCGAG	1 cut(s)	310
PinAI	ACCGGT	1 cut(s)	339
Psp124BI	GAGCTC	1 cut(s)	10
PspEI	GGTNACC	1 cut(s)	335
PspFI	CCCAGC	1 cut(s)	179
SacI	GAGCTC	1 cut(s)	10
Sau3AI	GATC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	10, 148
SetI	ASST	4 cut(s)	10, 57, 95, 334
Sfr274I	CTCGAG	1 cut(s)	310
SlaI	CTCGAG	1 cut(s)	310
SmlI	CTYRAG	1 cut(s)	310
SmoI	CTYRAG	1 cut(s)	310
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	2 cut(s)	56, 257
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	66, 85
TaaI	ACNGT	3 cut(s)	239, 273, 302
TaiI	ACGT	2 cut(s)	95, 334
TaqI	TCGA	1 cut(s)	311
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	164, 335
Tsp45I	GTSAC	2 cut(s)	164, 335
TspDTI	ATGAA	1 cut(s)	75
TspRI	CASTG	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	109
XspI	CTAG	2 cut(s)	56, 257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.