Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Reverse (-)

50038704 .. 50041429

Gene Structure 2726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00320990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCGCGAGCGTGCCGCACCGTGGGGTGCGGTCGTCGGGGCGTCCCTTGACCTGACTTCTTCTCAAACGATGTGGACGAGGAGTGCACCAACCTCGTCACAAGCTTCGCGGGGGTTGCGAGGGCGTTATCCTTGCTTCGCTGGTAGTATTGGTGGCGGTAGCACTAACGGTCGGCTCTTGGAGAGACTAGGACCGGAAGCACGGTCGCCGGGTTTCAACAAGGTTGAAGAAAACATTACCGAGACTTATGCTTATGGGACTAATATAACAATCATCACAGATCTTACATATCCGATTGATGGCTCCGTAAAAGCACATATTATTGTCTCTTTGCATCCTATGCCTCCAATATTACCAGAGATGTATAACCTCTCCCTCTCATGGATCTCATTGTATAATAAGAAAGCCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

14.87

Weight (kDa)

8.82

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	6, 109
AciI	CCGC	4 cut(s)	15, 29, 109, 156
AclWI	GGATC	1 cut(s)	392
AcyI	GRCGYC	1 cut(s)	41
AfiI	CCNNNNNNNGG	3 cut(s)	21, 299, 381
AgsI	TTSAA	2 cut(s)	217, 227
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	178, 236, 331
Alw44I	GTGCAC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	392
ApaLI	GTGCAC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	191
BaeGI	GKGCMC	1 cut(s)	88
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	1 cut(s)	293
BcgI	CGANNNNNNTGC	4 cut(s)	75, 109, 230, 264
BcnI	CCSGG	1 cut(s)	210
BcoDI	GTCTC	3 cut(s)	178, 236, 331
BfaI	CTAG	1 cut(s)	188
BglII	AGATCT	1 cut(s)	280
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	1 cut(s)	343
BpuMI	CCSGG	1 cut(s)	210
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	20
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	3 cut(s)	21, 299, 381
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	3 cut(s)	21, 299, 381
BseRI	GAGGAG	1 cut(s)	94
BseSI	GKGCMC	1 cut(s)	88
Bsh1236I	CGCG	2 cut(s)	6, 109
Bsh1285I	CGRYCG	3 cut(s)	33, 172, 206
BsiEI	CGRYCG	3 cut(s)	33, 172, 206
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	2 cut(s)	194, 209
BslFI	GGGAC	2 cut(s)	28, 271
BslI	CCNNNNNNNGG	3 cut(s)	21, 299, 381
BsmAI	GTCTC	3 cut(s)	178, 236, 331
BsmFI	GGGAC	2 cut(s)	28, 271
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	280, 384
BspACI	CCGC	4 cut(s)	15, 29, 109, 156
BspFNI	CGCG	2 cut(s)	6, 109
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	280, 384
BssNI	GRCGYC	1 cut(s)	41
Bst4CI	ACNGT	3 cut(s)	21, 170, 204
BstACI	GRCGYC	1 cut(s)	41
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	8, 12
BstDSI	CCRYGG	1 cut(s)	20
BstF5I	GGATG	1 cut(s)	334
BstFNI	CGCG	2 cut(s)	6, 109
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	2 cut(s)	283, 387
BstMAI	GTCTC	3 cut(s)	178, 236, 331
BstMBI	GATC	2 cut(s)	280, 384
BstMCI	CGRYCG	3 cut(s)	33, 172, 206
BstMWI	GCNNNNNNNGC	2 cut(s)	115, 340
BstSCI	CCNGG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	88
BstUI	CGCG	2 cut(s)	6, 109
BstX2I	RGATCY	2 cut(s)	280, 384
BstYI	RGATCY	2 cut(s)	280, 384
BtgI	CCRYGG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	8, 12
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	191
CseI	GACGC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	53, 88
CviAII	CATG	1 cut(s)	381
CviJI	RGCY	4 cut(s)	104, 175, 303, 407
CviKI_1	RGCY	4 cut(s)	104, 175, 303, 407
DpnI	GATC	2 cut(s)	282, 386
DpnII	GATC	2 cut(s)	280, 384
Eco47I	GGWCC	1 cut(s)	191
FaeI	CATG	1 cut(s)	384
FaiI	YATR	9 cut(s)	249, 255, 266, 289, 318, 341, 366, 382, 396
FaqI	GGGAC	2 cut(s)	28, 271
FatI	CATG	1 cut(s)	380
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	15
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	15
FspBI	CTAG	1 cut(s)	188
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	15
HapII	CCGG	2 cut(s)	194, 209
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	1 cut(s)	6
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	1 cut(s)	384
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HindIII	AAGCTT	1 cut(s)	102
HpaII	CCGG	2 cut(s)	194, 209
Hpy166II	GTNNAC	2 cut(s)	75, 86
Hpy188I	TCNGA	1 cut(s)	294
Hpy8I	GTNNAC	2 cut(s)	75, 86
Hpy99I	CGWCG	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	21, 170, 204
HpyCH4V	TGCA	2 cut(s)	86, 334
HpyF10VI	GCNNNNNNNGC	2 cut(s)	115, 340
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	1 cut(s)	384
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	2 cut(s)	280, 384
LmnI	GCTCC	1 cut(s)	308
LpnPI	CCDG	5 cut(s)	65, 126, 207, 222, 369
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	188
MaeIII	GTNAC	1 cut(s)	96
MalI	GATC	2 cut(s)	282, 386
MboI	GATC	2 cut(s)	280, 384
MboII	GAAGA	2 cut(s)	51, 239
MflI	RGATCY	2 cut(s)	280, 384
MhlI	GDGCHC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	72, 103, 113, 354, 380, 386
MspI	CCGG	2 cut(s)	194, 209
MspR9I	CCNGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	6, 109
MwoI	GCNNNNNNNGC	2 cut(s)	115, 340
NciI	CCSGG	1 cut(s)	210
NdeII	GATC	2 cut(s)	280, 384
NlaIII	CATG	1 cut(s)	384
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	1 cut(s)	74
PkrI	GCNGC	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	280, 384
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	280, 384
Sau96I	GGNCC	1 cut(s)	191
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	5 cut(s)	54, 95, 106, 225, 372
SfaNI	GCATC	1 cut(s)	343
SinI	GGWCC	1 cut(s)	191
SsiI	CCGC	4 cut(s)	15, 29, 109, 156
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	21, 170, 204
TauI	GCSGC	1 cut(s)	17
TseFI	GTSAC	1 cut(s)	96
Tsp45I	GTSAC	1 cut(s)	96
TspGWI	ACGGA	1 cut(s)	295
VneI	GTGCAC	1 cut(s)	84
VpaK11BI	GGWCC	1 cut(s)	191
XspI	CTAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.