Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

16561288 .. 16568431

Gene Structure 7144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00176940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGTTCGGAGACAACTTCGTCGAGAAGAACATTCTTGCTGACCGTCTTCTCCATGCACGGCCTCTATGTAAGGCCGTTGAGCGAGCAATCACCGGGAAGTTTGAGAGGAACACGGGTTTGCTAAAGCGTGACTTTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGCCGGAAGTAACGGTGGCGGTTGTGCTCGCGGTCGGCTCTGGGGAGACCGGGACCGGAAGTACGGTCGCCGGGTTGATCTCGGTGAGGGCGACGGTCGGCTCGCAAGGAGACTAGGACGGCGGGCGGTCACGGGTTTCAACGAGGTTGAGGGTTTGCTCCGGGGAGGCTTTGTAATCGGCGGGATTGATTGCGAAAGAAAGGTCAAAGGTCAAAAGACTAGTCTACTTTGGTCAGAGTTATTGTTCAAAAAGACTGAGGCCCAGTTTGGGATTGATTCTGGACCTGCTTCTGGACCTGCTTCTGCTTTTGGGATGGGAAAGAAGAAATCCACCAATACCGAAACTGAGGGATCTGGAAAACCAAGTGAAGAGACTAGTGAAGAGATAGAGGATAATGAACATGATGGAGATGGTCCAGGAAGACAAGAAATGGAGGATTATGTGGTAGTGATCCTGAGCCAATCAGTTAGGGGAAGAAACCAGTTGATAAATACGACTCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

24.65

Weight (kDa)

8.9

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	17
Acc36I	ACCTGC	2 cut(s)	463, 475
AccI	GTMKAC	1 cut(s)	394
AccII	CGCG	1 cut(s)	201
AciI	CCGC	5 cut(s)	189, 201, 292, 296, 351
AclWI	GGATC	2 cut(s)	529, 616
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	2 cut(s)	438, 461
AgsI	TTSAA	2 cut(s)	310, 418
AhlI	ACTAGT	2 cut(s)	389, 545
AjnI	CCWGG	1 cut(s)	586
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
Alw21I	GWGCWC	1 cut(s)	199
Alw26I	GTCTC	4 cut(s)	3, 210, 274, 536
AlwI	GGATC	2 cut(s)	529, 616
AoxI	GGCC	3 cut(s)	59, 72, 429
ArsI	GACNNNNNNTTYG	6 cut(s)	122, 154, 357, 376, 389, 408
AspS9I	GGNCC	5 cut(s)	223, 430, 452, 464, 584
AsuC2I	CCSGG	5 cut(s)	94, 145, 221, 242, 332
AsuHPI	GGTGA	2 cut(s)	82, 266
AvaII	GGWCC	4 cut(s)	223, 452, 464, 584
BbsI	GAAGAC	2 cut(s)	38, 598
Bbv12I	GWGCWC	1 cut(s)	199
BccI	CCATC	3 cut(s)	478, 569, 575
BceAI	ACGGC	3 cut(s)	59, 74, 305
BciT130I	CCWGG	1 cut(s)	588
BcnI	CCSGG	5 cut(s)	94, 145, 221, 242, 332
BcoDI	GTCTC	4 cut(s)	3, 210, 274, 536
BcuI	ACTAGT	2 cut(s)	389, 545
BfaI	CTAG	3 cut(s)	284, 390, 546
BfuAI	ACCTGC	2 cut(s)	463, 475
Bme1390I	CCNGG	6 cut(s)	94, 145, 221, 242, 332, 588
Bme18I	GGWCC	4 cut(s)	223, 452, 464, 584
BmgT120I	GGNCC	5 cut(s)	223, 430, 452, 464, 584
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	6 cut(s)	94, 145, 221, 242, 332, 588
BmrI	ACTGGG	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	427
BpiI	GAAGAC	2 cut(s)	38, 598
Bpu10I	CCTNAGC	1 cut(s)	626
BpuMI	CCSGG	5 cut(s)	94, 145, 221, 242, 332
BsaI	GGTCTC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	225
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	438, 461
Bse1I	ACTGG	2 cut(s)	433, 652
BseBI	CCWGG	1 cut(s)	588
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	1 cut(s)	489
BseLI	CCNNNNNNNGG	2 cut(s)	438, 461
BseMII	CTCAG	3 cut(s)	417, 507, 617
BseNI	ACTGG	2 cut(s)	433, 652
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	3 cut(s)	205, 238, 268
BshFI	GGCC	3 cut(s)	61, 74, 431
BsiEI	CGRYCG	3 cut(s)	205, 238, 268
BsiHKAI	GWGCWC	1 cut(s)	199
BsiSI	CCGG	7 cut(s)	93, 144, 174, 220, 226, 241, 331
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	2 cut(s)	438, 461
BsmAI	GTCTC	4 cut(s)	3, 210, 274, 536
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	3 cut(s)	61, 74, 431
Bso31I	GGTCTC	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	247, 521, 621
BspACI	CCGC	5 cut(s)	189, 201, 292, 296, 351
BspANI	GGCC	3 cut(s)	61, 74, 431
BspCNI	CTCAG	3 cut(s)	418, 508, 618
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	224
BspMI	ACCTGC	2 cut(s)	463, 475
BspPI	GGATC	2 cut(s)	529, 616
BspTNI	GGTCTC	1 cut(s)	210
BsrI	ACTGG	2 cut(s)	433, 652
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	247, 521, 621
Bst2UI	CCWGG	1 cut(s)	588
Bst4CI	ACNGT	4 cut(s)	44, 185, 236, 266
Bst6I	CTCTTC	2 cut(s)	534, 546
BstC8I	GCNNGC	4 cut(s)	84, 199, 273, 294
BstDEI	CTNAG	3 cut(s)	426, 516, 626
BstF5I	GGATG	1 cut(s)	489
BstFNI	CGCG	1 cut(s)	201
BstKTI	GATC	3 cut(s)	250, 524, 624
BstMAI	GTCTC	4 cut(s)	3, 210, 274, 536
BstMBI	GATC	3 cut(s)	247, 521, 621
BstMCI	CGRYCG	3 cut(s)	205, 238, 268
BstNI	CCWGG	1 cut(s)	588
BstSCI	CCNGG	6 cut(s)	92, 143, 219, 240, 330, 586
BstUI	CGCG	1 cut(s)	201
BstV2I	GAAGAC	2 cut(s)	38, 598
BstX2I	RGATCY	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	521
BsuRI	GGCC	3 cut(s)	61, 74, 431
BtsCI	GGATG	1 cut(s)	489
BveI	ACCTGC	2 cut(s)	463, 475
Cac8I	GCNNGC	4 cut(s)	84, 199, 273, 294
Cfr13I	GGNCC	5 cut(s)	223, 430, 452, 464, 584
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	53, 572
CviJI	RGCY	8 cut(s)	61, 74, 138, 208, 271, 339, 431, 630
CviKI_1	RGCY	8 cut(s)	61, 74, 138, 208, 271, 339, 431, 630
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	426, 516, 626
DpnI	GATC	3 cut(s)	249, 523, 623
DpnII	GATC	3 cut(s)	247, 521, 621
DrdI	GACNNNNNNGTC	1 cut(s)	17
DseDI	GACNNNNNNGTC	1 cut(s)	17
Eam1104I	CTCTTC	2 cut(s)	534, 546
EarI	CTCTTC	2 cut(s)	534, 546
Eco31I	GGTCTC	1 cut(s)	210
Eco47I	GGWCC	4 cut(s)	223, 452, 464, 584
EcoRII	CCWGG	1 cut(s)	586
FaeI	CATG	2 cut(s)	56, 575
FaiI	YATR	4 cut(s)	54, 67, 573, 612
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	52, 571
FauI	CCCGC	2 cut(s)	285, 344
FblI	GTMKAC	1 cut(s)	394
FokI	GGATG	1 cut(s)	496
FspBI	CTAG	3 cut(s)	284, 390, 546
HaeIII	GGCC	3 cut(s)	61, 74, 431
HapII	CCGG	7 cut(s)	93, 144, 174, 220, 226, 241, 331
Hin1II	CATG	2 cut(s)	56, 575
HinfI	GANTC	2 cut(s)	446, 667
HpaII	CCGG	7 cut(s)	93, 144, 174, 220, 226, 241, 331
HphI	GGTGA	2 cut(s)	82, 266
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	8, 406
Hpy188III	TCNNGA	6 cut(s)	22, 450, 462, 525, 625, 671
Hpy8I	GTNNAC	1 cut(s)	395
Hpy99I	CGWCG	2 cut(s)	23, 266
HpyCH4III	ACNGT	4 cut(s)	44, 185, 236, 266
HpyCH4V	TGCA	1 cut(s)	56
HpyF3I	CTNAG	3 cut(s)	426, 516, 626
Hsp92II	CATG	2 cut(s)	56, 575
Kzo9I	GATC	3 cut(s)	247, 521, 621
LmnI	GCTCC	1 cut(s)	333
MaeI	CTAG	3 cut(s)	284, 390, 546
MaeIII	GTNAC	4 cut(s)	128, 158, 179, 298
MalI	GATC	3 cut(s)	249, 523, 623
MboI	GATC	3 cut(s)	247, 521, 621
MboII	GAAGA	7 cut(s)	37, 38, 505, 551, 563, 603, 657
MflI	RGATCY	1 cut(s)	521
MhlI	GDGCHC	1 cut(s)	199
MlyI	GAGTC	1 cut(s)	661
MspI	CCGG	7 cut(s)	93, 144, 174, 220, 226, 241, 331
MspR9I	CCNGG	6 cut(s)	94, 145, 221, 242, 332, 588
MvaI	CCWGG	1 cut(s)	588
MvnI	CGCG	1 cut(s)	201
NciI	CCSGG	5 cut(s)	94, 145, 221, 242, 332
NdeII	GATC	3 cut(s)	247, 521, 621
NlaIII	CATG	2 cut(s)	56, 575
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	128, 298
PcsI	WCGNNNNNNNCGW	1 cut(s)	258
PfeI	GAWTC	1 cut(s)	446
PfoI	TCCNGGA	1 cut(s)	586
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp6I	CCWGG	1 cut(s)	586
PspGI	CCWGG	1 cut(s)	586
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	5 cut(s)	223, 430, 452, 464, 584
PsuI	RGATCY	1 cut(s)	521
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
Sau3AI	GATC	3 cut(s)	247, 521, 621
Sau96I	GGNCC	5 cut(s)	223, 430, 452, 464, 584
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	6 cut(s)	94, 145, 221, 242, 332, 588
SduI	GDGCHC	1 cut(s)	199
SetI	ASST	6 cut(s)	140, 318, 375, 382, 457, 469
SinI	GGWCC	4 cut(s)	223, 452, 464, 584
SpeI	ACTAGT	2 cut(s)	389, 545
SsiI	CCGC	5 cut(s)	189, 201, 292, 296, 351
SspMI	CTAG	3 cut(s)	284, 390, 546
StyD4I	CCNGG	6 cut(s)	92, 143, 219, 240, 330, 586
TaaI	ACNGT	4 cut(s)	44, 185, 236, 266
TaqI	TCGA	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	446
TseFI	GTSAC	2 cut(s)	128, 298
Tsp45I	GTSAC	2 cut(s)	128, 298
TspDTI	ATGAA	1 cut(s)	582
VpaK11BI	GGWCC	4 cut(s)	223, 452, 464, 584
XmiI	GTMKAC	1 cut(s)	394
XspI	CTAG	3 cut(s)	284, 390, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.