Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

23908208 .. 23922654

Gene Structure 14447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00101950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTTCGGTCCTCCATTTTTTGTCCCCAATCACGCTTCATTTGCCACCAAGTTGGTTCCGTTGAGCCCTTGACTTTGACATCAACCACATCACCAGCGCCTCCAACATTAGACACCAACACAAGTAGAAAGTTCGGGTTACCCTCAAGCGTAAACCTAATCCCTCCTCTCCCACCGCACCAGCTCCTTCGAAACGGTATCGTAACAGTCTCGGCTTGTTGGGCTATCGCTATCCTTAAGAACATTGGCATGGTCAAATCAAAGTGTTTCGAGGAGGGCTGCACGATGAGTCGGGACCTCCCCGTACATTCGTTAGTTGCAGTTAATTACTTTGATGGTACCGGACCGACACCATTTATCATCCGCGCACTCTATCTCAAAACAAGCACCGCAGTCTCGCCGCCATTTCGGCTCCGGGGAGACCGGGACCGGAAGTACGGTCGCCGGTTGATCCGTGAGGCCGACGGTCGGCTCGCGAGGAGACTAGGACGGCGGGCGGTCACGGGTTTCAACAAGGTTGAGGGTTTGCTCCGGGGAGGCTTTGTAATCGCCGGGATTGATTGCCGAGAGGGAGGTCCTTTCCGAGTAGTTGCGCAGCGTGCGTGCGGTGCGTCGTTGGGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

22.52

Weight (kDa)

10.49

Isoelectric Point (pI)

58.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	594
Acc65I	GGTACC	1 cut(s)	338
AccB1I	GGYRCC	1 cut(s)	338
AccII	CGCG	2 cut(s)	366, 476
AciI	CCGC	7 cut(s)	176, 364, 390, 401, 493, 497, 606
AclWI	GGATC	1 cut(s)	445
AfaI	GTAC	3 cut(s)	306, 340, 437
AfiI	CCNNNNNNNGG	1 cut(s)	468
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	511
AluBI	AGCT	1 cut(s)	184
AluI	AGCT	1 cut(s)	184
Alw26I	GTCTC	4 cut(s)	214, 400, 414, 475
AlwI	GGATC	1 cut(s)	445
AoxI	GGCC	1 cut(s)	459
ApeKI	GCWGC	2 cut(s)	279, 595
Asp718I	GGTACC	1 cut(s)	338
AspLEI	GCGC	3 cut(s)	100, 368, 595
AspS9I	GGNCC	5 cut(s)	9, 295, 344, 427, 575
AsuC2I	CCSGG	4 cut(s)	416, 425, 533, 553
AsuHPI	GGTGA	1 cut(s)	84
AsuII	TTCGAA	1 cut(s)	190
AvaII	GGWCC	5 cut(s)	9, 295, 344, 427, 575
BanI	GGYRCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	69
BbvI	GCAGC	2 cut(s)	266, 607
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	506
BcnI	CCSGG	4 cut(s)	416, 425, 533, 553
BcoDI	GTCTC	4 cut(s)	214, 400, 414, 475
BfaI	CTAG	1 cut(s)	485
BfoI	RGCGCY	1 cut(s)	101
BfrI	CTTAAG	1 cut(s)	236
BglI	GCCNNNNNGGC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	280, 401, 596
BlsI	GCNGC	3 cut(s)	281, 402, 597
Bme1390I	CCNGG	4 cut(s)	416, 425, 533, 553
Bme18I	GGWCC	5 cut(s)	9, 295, 344, 427, 575
BmgT120I	GGNCC	5 cut(s)	9, 295, 344, 427, 575
BmiI	GGNNCC	5 cut(s)	58, 296, 340, 413, 428
BmrFI	CCNGG	4 cut(s)	416, 425, 533, 553
Bpu14I	TTCGAA	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	130
BpuMI	CCSGG	4 cut(s)	416, 425, 533, 553
BsaI	GGTCTC	1 cut(s)	414
BsaJI	CCNNGG	2 cut(s)	415, 532
BsaWI	WCCGGW	2 cut(s)	341, 429
BsaXI	ACNNNNNCTCC	2 cut(s)	528, 558
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	444
BseDI	CCNNGG	2 cut(s)	415, 532
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseRI	GAGGAG	3 cut(s)	156, 287, 493
BseXI	GCAGC	2 cut(s)	266, 607
BsgI	GTGCAG	1 cut(s)	265
Bsh1236I	CGCG	2 cut(s)	366, 476
Bsh1285I	CGRYCG	2 cut(s)	442, 469
BshFI	GGCC	1 cut(s)	461
BshNI	GGYRCC	1 cut(s)	338
BsiEI	CGRYCG	2 cut(s)	442, 469
BsiSI	CCGG	7 cut(s)	342, 415, 424, 430, 445, 532, 552
BslFI	GGGAC	3 cut(s)	9, 308, 440
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmAI	GTCTC	4 cut(s)	214, 400, 414, 475
BsmFI	GGGAC	3 cut(s)	9, 308, 440
BsnI	GGCC	1 cut(s)	461
Bso31I	GGTCTC	1 cut(s)	414
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	450
Bsp68I	TCGCGA	1 cut(s)	476
BspACI	CCGC	7 cut(s)	176, 364, 390, 401, 493, 497, 606
BspANI	GGCC	1 cut(s)	461
BspFNI	CGCG	2 cut(s)	366, 476
BspLI	GGNNCC	5 cut(s)	58, 296, 340, 413, 428
BspPI	GGATC	1 cut(s)	445
BspT104I	TTCGAA	1 cut(s)	190
BspT107I	GGYRCC	1 cut(s)	338
BspTI	CTTAAG	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	444
BssAI	RCCGGY	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	415, 532
BssMI	GATC	1 cut(s)	450
Bst4CI	ACNGT	4 cut(s)	197, 208, 440, 467
BstAFI	CTTAAG	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	4 cut(s)	474, 495, 600, 604
BstEII	GGTNACC	1 cut(s)	138
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	2 cut(s)	366, 476
BstH2I	RGCGCY	1 cut(s)	101
BstHHI	GCGC	3 cut(s)	100, 368, 595
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	4 cut(s)	214, 400, 414, 475
BstMBI	GATC	1 cut(s)	450
BstMCI	CGRYCG	2 cut(s)	442, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	42, 221, 409, 599, 608
BstPI	GGTNACC	1 cut(s)	138
BstSCI	CCNGG	4 cut(s)	414, 423, 531, 551
BstUI	CGCG	2 cut(s)	366, 476
BstV1I	GCAGC	2 cut(s)	266, 607
BstXI	CCANNNNNNTGG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	461
BtsCI	GGATG	1 cut(s)	360
BtuMI	TCGCGA	1 cut(s)	476
Cac8I	GCNNGC	4 cut(s)	474, 495, 600, 604
CfoI	GCGC	3 cut(s)	100, 368, 595
Cfr10I	RCCGGY	1 cut(s)	444
Cfr13I	GGNCC	5 cut(s)	9, 295, 344, 427, 575
CpoI	CGGWCCG	1 cut(s)	344
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	3 cut(s)	305, 339, 436
CspI	CGGWCCG	1 cut(s)	344
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	9 cut(s)	67, 184, 215, 224, 279, 412, 461, 472, 540
CviKI_1	RGCY	9 cut(s)	67, 184, 215, 224, 279, 412, 461, 472, 540
CviQI	GTAC	3 cut(s)	305, 339, 436
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	414
Eco47I	GGWCC	5 cut(s)	9, 295, 344, 427, 575
Eco91I	GGTNACC	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	295, 575
EcoO65I	GGTNACC	1 cut(s)	138
EcoT38I	GRGCYC	1 cut(s)	69
FaeI	CATG	1 cut(s)	253
FaiI	YATR	1 cut(s)	251
FaqI	GGGAC	3 cut(s)	9, 308, 440
FatI	CATG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	486
Fnu4HI	GCNGC	3 cut(s)	280, 401, 596
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	280, 401, 596
FspBI	CTAG	1 cut(s)	485
FspI	TGCGCA	1 cut(s)	594
GlaI	GCGC	3 cut(s)	99, 367, 594
GluI	GCNGC	3 cut(s)	280, 401, 596
HaeII	RGCGCY	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	461
HapII	CCGG	7 cut(s)	342, 415, 424, 430, 445, 532, 552
HgaI	GACGC	1 cut(s)	600
HhaI	GCGC	3 cut(s)	100, 368, 595
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	3 cut(s)	98, 366, 593
HinP1I	GCGC	3 cut(s)	98, 366, 593
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	7 cut(s)	342, 415, 424, 430, 445, 532, 552
HphI	GGTGA	1 cut(s)	84
Hpy166II	GTNNAC	1 cut(s)	154
Hpy188I	TCNGA	1 cut(s)	584
Hpy188III	TCNNGA	2 cut(s)	293, 475
Hpy8I	GTNNAC	1 cut(s)	154
Hpy99I	CGWCG	2 cut(s)	467, 616
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	4 cut(s)	197, 208, 440, 467
HpyCH4V	TGCA	2 cut(s)	282, 320
HpyF10VI	GCNNNNNNNGC	5 cut(s)	42, 221, 409, 599, 608
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	3 cut(s)	98, 366, 593
KpnI	GGTACC	1 cut(s)	342
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	3 cut(s)	189, 417, 534
LpnPI	CCDG	9 cut(s)	108, 194, 355, 428, 437, 443, 458, 545, 565
Lsp1109I	GCAGC	2 cut(s)	266, 607
MaeI	CTAG	1 cut(s)	485
MaeIII	GTNAC	3 cut(s)	138, 202, 499
MalI	GATC	1 cut(s)	452
MboI	GATC	1 cut(s)	450
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	1 cut(s)	325
MlyI	GAGTC	1 cut(s)	298
MmeI	TCCRAC	1 cut(s)	128
MseI	TTAA	2 cut(s)	237, 324
MslI	CAYNNNNRTG	1 cut(s)	248
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	7 cut(s)	342, 415, 424, 430, 445, 532, 552
MspR9I	CCNGG	4 cut(s)	416, 425, 533, 553
MvnI	CGCG	2 cut(s)	366, 476
MwoI	GCNNNNNNNGC	5 cut(s)	42, 221, 409, 599, 608
NciI	CCSGG	4 cut(s)	416, 425, 533, 553
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	5 cut(s)	58, 296, 340, 413, 428
NmeAIII	GCCGAG	2 cut(s)	191, 590
NmuCI	GTSAC	1 cut(s)	499
NruI	TCGCGA	1 cut(s)	476
NsbI	TGCGCA	1 cut(s)	594
NspV	TTCGAA	1 cut(s)	190
PkrI	GCNGC	3 cut(s)	281, 402, 597
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PpuMI	RGGWCCY	2 cut(s)	295, 575
Psp5II	RGGWCCY	2 cut(s)	295, 575
PspEI	GGTNACC	1 cut(s)	138
PspN4I	GGNNCC	5 cut(s)	58, 296, 340, 413, 428
PspPI	GGNCC	5 cut(s)	9, 295, 344, 427, 575
PspPPI	RGGWCCY	2 cut(s)	295, 575
RruI	TCGCGA	1 cut(s)	476
RsaI	GTAC	3 cut(s)	306, 340, 437
RsaNI	GTAC	3 cut(s)	305, 339, 436
RseI	CAYNNNNRTG	1 cut(s)	248
Rsr2I	CGGWCCG	1 cut(s)	344
RsrII	CGGWCCG	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	237, 324
SatI	GCNGC	3 cut(s)	280, 401, 596
Sau3AI	GATC	1 cut(s)	450
Sau96I	GGNCC	5 cut(s)	9, 295, 344, 427, 575
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	4 cut(s)	416, 425, 533, 553
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	5 cut(s)	159, 186, 300, 519, 577
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	5 cut(s)	9, 295, 344, 427, 575
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	145, 236
SmoI	CTYRAG	2 cut(s)	145, 236
Sse9I	AATT	1 cut(s)	325
SsiI	CCGC	7 cut(s)	176, 364, 390, 401, 493, 497, 606
SspMI	CTAG	1 cut(s)	485
StyD4I	CCNGG	4 cut(s)	414, 423, 531, 551
TaaI	ACNGT	4 cut(s)	197, 208, 440, 467
TaqI	TCGA	2 cut(s)	190, 270
TaqII	GACCGA	1 cut(s)	361
TasI	AATT	1 cut(s)	325
TauI	GCSGC	1 cut(s)	403
Tru1I	TTAA	2 cut(s)	237, 324
Tru9I	TTAA	2 cut(s)	237, 324
TseFI	GTSAC	1 cut(s)	499
TseI	GCWGC	2 cut(s)	279, 595
Tsp45I	GTSAC	1 cut(s)	499
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	2 cut(s)	49, 443
Vha464I	CTTAAG	1 cut(s)	236
VpaK11BI	GGWCC	5 cut(s)	9, 295, 344, 427, 575
XspI	CTAG	1 cut(s)	485

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.