Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000554.1

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Forward (+)

202925 .. 205342

Gene Structure 2418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000554.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

atggcaaactacagacgagccaagctcgcagtcgacgcctttcgtggctttacgccaagaatcgtaactagaccagagcccgtctccggagtcttctccaccaagtcttcatctttggcctcagaaccagccaagatttctgggttttctccttcccattctattttacacaaaccaattccacacgcacagttgagatattatcatgtggatcggcggcattttgatcctcgccgatgggctgaccggttcaagagatatttgatttaccccggaattttattcctgttgttactattgtggagggtggtggggttttttatcaccaattatgagacactgccatacactaaacgttggctttttataattctgtcaactgatttggagaggaagctgggagagtcgcaatttgaggaaatgaaagcttcacaatttgaggggaagattttgctggctatacacccggaaagagtgaggattagggaagttgagactgtgcaggcattgatgaatggtgaagaggtgaaaatggaagggaagtgttcacttgaggatgagaagaagggaaaggatattggtgttaaagacgctacttcgcatttggttggcttgaattgggaggtattggtggtggatgagccgattgtcaatgcgtattgcttgccgggtgggaagattgtggttcgcaaaatgcagctggtatcagcatacaggtctttgactctttgccgagtttacaagaaaaagaagcaaggggaggaagatttggcggtggtggccgtggtggtagtaggtttggtggaagaggaggtggcaggggtttctctaatggaagaaatgataggtttggtggcggcagaggccgcggcaactacaacagatggatcaaatttcagtgattcagtccttgtgttaagttcgtctgctgcaatgtctatcaagtgtgaggctatgcccctaccacaagatgaagtcatgacaaatatatgtggaggtcaacttgaagaaaatggaagtctgaagccactctctgatgatttctcgttggttttcaaaacgagaaccaacaataaggagaaatctaacaatcctttgcggaggccggttttcaataaccaagaatgggaagttctcttcaagaatgtgattgatgaggatacgacatttgactgtcactcttccaaaaactcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

398

Amino Acids

44.87

Weight (kDa)

7.09

Isoelectric Point (pI)

42.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	869
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	6 cut(s)	217, 773, 857, 867, 869, 1099
AclI	AACGTT	1 cut(s)	355
AclWI	GGATC	3 cut(s)	219, 221, 895
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	2 cut(s)	276, 892
AcuI	CTGAAG	1 cut(s)	1043
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	86, 1126
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	6 cut(s)	253, 616, 1007, 1057, 1114, 1141
AluBI	AGCT	4 cut(s)	25, 397, 428, 700
AluI	AGCT	4 cut(s)	25, 397, 428, 700
Alw26I	GTCTC	3 cut(s)	88, 329, 488
AlwI	GGATC	3 cut(s)	219, 221, 895
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	4 cut(s)	117, 780, 864, 1103
ApeKI	GCWGC	2 cut(s)	697, 929
ApoI	RAATTY	2 cut(s)	276, 892
AsiGI	ACCGGT	1 cut(s)	246
AsuC2I	CCSGG	3 cut(s)	273, 467, 669
AsuHPI	GGTGA	3 cut(s)	316, 530, 538
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	1192
BbsI	GAAGAC	2 cut(s)	85, 99
BbvI	GCAGC	2 cut(s)	709, 916
BccI	CCATC	2 cut(s)	231, 878
BceAI	ACGGC	1 cut(s)	767
BciVI	GTATCC	1 cut(s)	1153
BcnI	CCSGG	3 cut(s)	273, 467, 669
BcoDI	GTCTC	3 cut(s)	88, 329, 488
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	1153
BisI	GCNGC	6 cut(s)	218, 698, 858, 867, 870, 930
BlsI	GCNGC	6 cut(s)	219, 699, 859, 868, 871, 931
Bme1390I	CCNGG	3 cut(s)	273, 467, 669
BmrFI	CCNGG	3 cut(s)	273, 467, 669
BpiI	GAAGAC	2 cut(s)	85, 99
BplI	GAGNNNNNCTC	4 cut(s)	9, 41, 68, 100
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	3 cut(s)	273, 467, 669
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	271, 783, 867
BsaWI	WCCGGW	2 cut(s)	86, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 1126
Bse118I	RCCGGY	2 cut(s)	246, 1105
Bse3DI	GCAATG	1 cut(s)	939
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	271, 783, 867
BseGI	GGATG	2 cut(s)	562, 643
BseLI	CCNNNNNNNGG	2 cut(s)	86, 1126
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	824
BseXI	GCAGC	2 cut(s)	709, 916
BseYI	CCCAGC	1 cut(s)	397
BsgI	GTGCAG	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	869
BshFI	GGCC	4 cut(s)	119, 782, 866, 1105
BshTI	ACCGGT	1 cut(s)	246
BsiSI	CCGG	6 cut(s)	87, 247, 273, 467, 668, 1106
BslI	CCNNNNNNNGG	2 cut(s)	86, 1126
BsmAI	GTCTC	3 cut(s)	88, 329, 488
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	119, 782, 866, 1105
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	211, 226, 887
BspACI	CCGC	6 cut(s)	217, 773, 857, 867, 869, 1099
BspANI	GGCC	4 cut(s)	119, 782, 866, 1105
BspCNI	CTCAG	1 cut(s)	134
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	869
BspHI	TCATGA	1 cut(s)	978
BspPI	GGATC	3 cut(s)	219, 221, 895
BsrDI	GCAATG	1 cut(s)	939
BsrFI	RCCGGY	2 cut(s)	246, 1105
BssAI	RCCGGY	2 cut(s)	246, 1105
BssECI	CCNNGG	3 cut(s)	271, 783, 867
BssMI	GATC	3 cut(s)	211, 226, 887
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	1192
Bst2BI	CACGAG	1 cut(s)	1192
Bst4CI	ACNGT	3 cut(s)	192, 499, 1175
Bst6I	CTCTTC	4 cut(s)	516, 801, 1142, 1186
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	4 cut(s)	27, 456, 504, 665
BstDEI	CTNAG	1 cut(s)	121
BstDSI	CCRYGG	2 cut(s)	783, 867
BstF5I	GGATG	2 cut(s)	562, 643
BstFNI	CGCG	1 cut(s)	869
BstKTI	GATC	3 cut(s)	214, 229, 890
BstMAI	GTCTC	3 cut(s)	88, 329, 488
BstMBI	GATC	3 cut(s)	211, 226, 887
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 779, 863, 866
BstSCI	CCNGG	3 cut(s)	271, 465, 667
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	869
BstV1I	GCAGC	2 cut(s)	709, 916
BstV2I	GAAGAC	2 cut(s)	85, 99
BsuI	GTATCC	1 cut(s)	1153
BsuRI	GGCC	4 cut(s)	119, 782, 866, 1105
BtgI	CCRYGG	2 cut(s)	783, 867
BtsCI	GGATG	2 cut(s)	562, 643
BtsI	GCAGTG	1 cut(s)	338
BtsIMutI	CAGTG	2 cut(s)	338, 904
Cac8I	GCNNGC	4 cut(s)	27, 456, 504, 665
CciI	TCATGA	1 cut(s)	978
Cfr10I	RCCGGY	2 cut(s)	246, 1105
Cfr42I	CCGCGG	1 cut(s)	870
CseI	GACGC	2 cut(s)	44, 599
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	2 cut(s)	206, 979
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	3 cut(s)	213, 228, 889
DpnII	GATC	3 cut(s)	211, 226, 887
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	4 cut(s)	516, 801, 1142, 1186
EarI	CTCTTC	4 cut(s)	516, 801, 1142, 1186
Eco24I	GRGCYC	1 cut(s)	81
Eco57I	CTGAAG	1 cut(s)	1043
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	2 cut(s)	209, 982
FatI	CATG	2 cut(s)	205, 978
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	6 cut(s)	218, 698, 858, 867, 870, 930
FokI	GGATG	2 cut(s)	569, 650
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	6 cut(s)	218, 698, 858, 867, 870, 930
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	6 cut(s)	218, 698, 858, 867, 870, 930
GsaI	CCCAGC	1 cut(s)	401
HaeIII	GGCC	4 cut(s)	119, 782, 866, 1105
HapII	CCGG	6 cut(s)	87, 247, 273, 467, 668, 1106
HgaI	GACGC	2 cut(s)	44, 599
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	209, 982
HincII	GTYRAC	3 cut(s)	34, 378, 1001
HindII	GTYRAC	3 cut(s)	34, 378, 1001
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	5 cut(s)	60, 90, 404, 724, 902
HpaII	CCGG	6 cut(s)	87, 247, 273, 467, 668, 1106
HphI	GGTGA	3 cut(s)	316, 530, 538
Hpy166II	GTNNAC	5 cut(s)	34, 378, 548, 739, 1001
Hpy188I	TCNGA	3 cut(s)	124, 1023, 1036
Hpy188III	TCNNGA	5 cut(s)	87, 253, 979, 1141, 1194
Hpy8I	GTNNAC	5 cut(s)	34, 378, 548, 739, 1001
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	162, 530, 559
HpyCH4III	ACNGT	3 cut(s)	192, 499, 1175
HpyCH4IV	ACGT	1 cut(s)	355
HpyCH4V	TGCA	3 cut(s)	502, 697, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 779, 863, 866
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	355
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	209, 982
Kpn2I	TCCGGA	1 cut(s)	86
KspI	CCGCGG	1 cut(s)	870
Kzo9I	GATC	3 cut(s)	211, 226, 887
Lsp1109I	GCAGC	2 cut(s)	709, 916
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	355
MaeIII	GTNAC	3 cut(s)	64, 291, 1175
MalI	GATC	3 cut(s)	213, 228, 889
MboI	GATC	3 cut(s)	211, 226, 887
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	8 cut(s)	177, 276, 328, 369, 410, 434, 616, 892
MlyI	GAGTC	3 cut(s)	99, 413, 718
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	2 cut(s)	585, 917
MspA1I	CMGCKG	2 cut(s)	700, 869
MspI	CCGG	6 cut(s)	87, 247, 273, 467, 668, 1106
MspR9I	CCNGG	3 cut(s)	273, 467, 669
MvnI	CGCG	1 cut(s)	869
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 779, 863, 866
NciI	CCSGG	3 cut(s)	273, 467, 669
NdeII	GATC	3 cut(s)	211, 226, 887
NlaIII	CATG	2 cut(s)	209, 982
NmeAIII	GCCGAG	1 cut(s)	758
NmuCI	GTSAC	1 cut(s)	1175
PagI	TCATGA	1 cut(s)	978
PfeI	GAWTC	2 cut(s)	60, 902
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	6 cut(s)	219, 699, 859, 868, 871, 931
PleI	GAGTC	3 cut(s)	98, 412, 718
PpsI	GAGTC	3 cut(s)	98, 412, 718
PsiI	TTATAA	1 cut(s)	368
Psp1406I	AACGTT	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	700
SacII	CCGCGG	1 cut(s)	870
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	585, 917
SatI	GCNGC	6 cut(s)	218, 698, 858, 867, 870, 930
Sau3AI	GATC	3 cut(s)	211, 226, 887
SchI	GAGTC	3 cut(s)	99, 413, 718
ScrFI	CCNGG	3 cut(s)	273, 467, 669
SduI	GDGCHC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	10
Sfr303I	CCGCGG	1 cut(s)	870
SgrBI	CCGCGG	1 cut(s)	870
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	8 cut(s)	177, 276, 328, 369, 410, 434, 616, 892
SsiI	CCGC	6 cut(s)	217, 773, 857, 867, 869, 1099
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	271, 465, 667
TaaI	ACNGT	3 cut(s)	192, 499, 1175
TaiI	ACGT	1 cut(s)	358
TaqI	TCGA	1 cut(s)	33
TasI	AATT	8 cut(s)	177, 276, 328, 369, 410, 434, 616, 892
TauI	GCSGC	4 cut(s)	220, 860, 869, 872
TfiI	GAWTC	2 cut(s)	60, 902
Tru1I	TTAA	2 cut(s)	585, 917
Tru9I	TTAA	2 cut(s)	585, 917
TscAI	CASTG	2 cut(s)	345, 904
TseFI	GTSAC	1 cut(s)	1175
TseI	GCWGC	2 cut(s)	697, 929
Tsp45I	GTSAC	1 cut(s)	1175
TspDTI	ATGAA	4 cut(s)	99, 437, 527, 987
TspRI	CASTG	2 cut(s)	345, 904
XapI	RAATTY	2 cut(s)	276, 892
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.