Rroxscaffold_1G00049280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004835
Physical Location & Seq
Forward (+)
69477819 .. 69479791
1973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049280.1

Sequence Viewer

Length: 324 bp
ATGATCGGTAGCCTCAACTTTCATGCAAGAGATGAGAGTTTCTCGGATCATGCAATATTATCTCAAAGCTTGAAGGGCCAGCAGCGAGTGTTCAGCTCTCCATACACACTCGAAAATAATTTTTATAAGATGGCAGATCATGATCGGACGCCGACAACCATGAAATCACAGTTGGCTTGCAAACCTGTCTCTTTTGAGCGAGTGATTGCGCGGGCGTGCCAAGACCGTGGGGTGCGCTCGTCGGAGGAGTCTCTTGACCTCGACTTCTTCTTCAAGCGTTGTGGACGAGGAGAGCACCAACCTCGCCACAAGGTTCTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.34

Weight (kDa)

8.93

Isoelectric Point (pI)

53.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 126
AccII CGCG 1 cut(s) 211
AciI CCGC 1 cut(s) 211
AclWI GGATC 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 149
AgsI TTSAA 2 cut(s) 73, 274
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 69, 96
AluI AGCT 2 cut(s) 69, 96
Alw21I GWGCWC 1 cut(s) 297
Alw26I GTCTC 2 cut(s) 193, 255
AlwI GGATC 1 cut(s) 54
AoxI GGCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 82
AspLEI GCGC 2 cut(s) 211, 237
AspS9I GGNCC 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 2 cut(s) 193, 255
BfaI CTAG 1 cut(s) 322
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 26, 58
BsaBI GATNNNNATC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 226
Bse8I GATNNNNATC 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 226
BseJI GATNNNNATC 1 cut(s) 141
BseRI GAGGAG 2 cut(s) 260, 303
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 211
BshFI GGCC 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 297
BsmAI GTCTC 2 cut(s) 193, 255
BsnI GGCC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 4 cut(s) 3, 46, 136, 142
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 78
BspFNI CGCG 1 cut(s) 211
BspHI TCATGA 1 cut(s) 139
BspPI GGATC 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 4 cut(s) 3, 46, 136, 142
BssNI GRCGYC 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 171, 227
BstACI GRCGYC 1 cut(s) 149
BstC8I GCNNGC 4 cut(s) 80, 178, 213, 217
BstDSI CCRYGG 1 cut(s) 226
BstFNI CGCG 1 cut(s) 211
BstHHI GCGC 2 cut(s) 211, 237
BstKTI GATC 4 cut(s) 6, 49, 139, 145
BstMAI GTCTC 2 cut(s) 193, 255
BstMBI GATC 4 cut(s) 3, 46, 136, 142
BstMWI GCNNNNNNNGC 1 cut(s) 75
BstUI CGCG 1 cut(s) 211
BstV1I GCAGC 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 227
BsuRI GGCC 1 cut(s) 78
BtgI CCRYGG 1 cut(s) 226
Cac8I GCNNGC 4 cut(s) 80, 178, 213, 217
CciI TCATGA 1 cut(s) 139
CfoI GCGC 2 cut(s) 211, 237
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 1 cut(s) 157
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviAII CATG 4 cut(s) 23, 50, 140, 160
CviJI RGCY 5 cut(s) 12, 69, 78, 96, 176
CviKI_1 RGCY 5 cut(s) 12, 69, 78, 96, 176
DpnI GATC 4 cut(s) 5, 48, 138, 144
DpnII GATC 4 cut(s) 3, 46, 136, 142
FaeI CATG 4 cut(s) 26, 53, 143, 163
FaiI YATR 6 cut(s) 24, 51, 103, 126, 141, 161
FatI CATG 4 cut(s) 22, 49, 139, 159
FauI CCCGC 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 83
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 1 cut(s) 322
GlaI GCGC 2 cut(s) 210, 236
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 1 cut(s) 78
HgaI GACGC 1 cut(s) 157
HhaI GCGC 2 cut(s) 211, 237
Hin1I GRCGYC 1 cut(s) 149
Hin1II CATG 4 cut(s) 26, 53, 143, 163
Hin6I GCGC 2 cut(s) 209, 235
HinP1I GCGC 2 cut(s) 209, 235
HindIII AAGCTT 1 cut(s) 67
HinfI GANTC 1 cut(s) 248
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 3 cut(s) 46, 147, 244
Hpy188III TCNNGA 2 cut(s) 140, 254
Hpy8I GTNNAC 1 cut(s) 284
Hpy99I CGWCG 1 cut(s) 244
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 171, 227
HpyCH4V TGCA 3 cut(s) 26, 53, 180
HpyF10VI GCNNNNNNNGC 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 149
Hsp92II CATG 4 cut(s) 26, 53, 143, 163
HspAI GCGC 2 cut(s) 209, 235
Kzo9I GATC 4 cut(s) 3, 46, 136, 142
LpnPI CCDG 2 cut(s) 92, 198
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 322
MalI GATC 4 cut(s) 5, 48, 138, 144
MboI GATC 4 cut(s) 3, 46, 136, 142
MboII GAAGA 3 cut(s) 259, 262, 308
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 5 cut(s) 23, 238, 269, 281, 312
MvnI CGCG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 75
NdeII GATC 4 cut(s) 3, 46, 136, 142
NlaIII CATG 4 cut(s) 26, 53, 143, 163
PagI TCATGA 1 cut(s) 139
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PsiI TTATAA 1 cut(s) 126
PspPI GGNCC 1 cut(s) 76
SatI GCNGC 1 cut(s) 83
Sau3AI GATC 4 cut(s) 3, 46, 136, 142
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 257
SduI GDGCHC 1 cut(s) 297
SetI ASST 6 cut(s) 71, 98, 187, 261, 304, 315
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 211
SspI AATATT 1 cut(s) 57
SspMI CTAG 1 cut(s) 322
TaaI ACNGT 2 cut(s) 171, 227
TaqI TCGA 2 cut(s) 111, 261
TasI AATT 1 cut(s) 118
TseI GCWGC 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 11, 176
XspI CTAG 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.