Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Reverse (-)

42228774 .. 42233468

Gene Structure 4695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGGCATCGACTAATGAACAACCAAAAACGTACTTGCAGGCAACATATTATTATACTAGAGCATTCCACATATAGAAAAGCCTCTAACAATGAAGGGACAGCTCACCCTACCTGGAATTGGAGTGCTCGCCCAAACTTAGCTTCGCTTCCGACTCTCGATACTCCTTCCAATTACAAGTCATCCGGTCTGGCTTGGGCATACAATATCCTCCACCGGTGTCGGGCATCCACCGCCTCGAGTTGGCGTACATCTATGGAAAGGACCTACAAATGTGAAGAGATGGAAGGTTATCGGAGGACCAGCCTAAGGCCGCCAAACACACTCCGATGCCTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

13.29

Weight (kDa)

10.47

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	234, 314
AfaI	GTAC	2 cut(s)	34, 250
AfiI	CCNNNNNNNGG	4 cut(s)	120, 223, 243, 309
AgeI	ACCGGT	1 cut(s)	216
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	127, 159
AluBI	AGCT	2 cut(s)	104, 143
AluI	AGCT	2 cut(s)	104, 143
Alw21I	GWGCWC	1 cut(s)	130
Ama87I	CYCGRG	1 cut(s)	238
AoxI	GGCC	1 cut(s)	311
AsiGI	ACCGGT	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	264, 300
AsuHPI	GGTGA	1 cut(s)	98
AvaI	CYCGRG	1 cut(s)	238
AvaII	GGWCC	2 cut(s)	264, 300
AxyI	CCTNAGG	1 cut(s)	308
Bbv12I	GWGCWC	1 cut(s)	130
BccI	CCATC	1 cut(s)	277
BciT130I	CCWGG	1 cut(s)	115
BfaI	CTAG	1 cut(s)	59
BisI	GCNGC	1 cut(s)	314
BlsI	GCNGC	1 cut(s)	315
Bme1390I	CCNGG	1 cut(s)	115
Bme18I	GGWCC	2 cut(s)	264, 300
BmeT110I	CYCGRG	1 cut(s)	238
BmgT120I	GGNCC	2 cut(s)	264, 300
BmrFI	CCNGG	1 cut(s)	115
BmsI	GCATC	3 cut(s)	16, 236, 320
BsaWI	WCCGGW	2 cut(s)	185, 216
Bsc4I	CCNNNNNNNGG	4 cut(s)	120, 223, 243, 309
Bse118I	RCCGGY	1 cut(s)	216
Bse21I	CCTNAGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	182, 227
BseLI	CCNNNNNNNGG	4 cut(s)	120, 223, 243, 309
BshFI	GGCC	1 cut(s)	313
BshTI	ACCGGT	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	238
BsiSI	CCGG	2 cut(s)	186, 217
BslFI	GGGAC	1 cut(s)	112
BslI	CCNNNNNNNGG	4 cut(s)	120, 223, 243, 309
BsmFI	GGGAC	1 cut(s)	112
BsmI	GAATGC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	238
Bsp1286I	GDGCHC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	234, 314
BspANI	GGCC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	216
BssAI	RCCGGY	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	273
BstC8I	GCNNGC	2 cut(s)	41, 130
BstDEI	CTNAG	2 cut(s)	139, 308
BstF5I	GGATG	2 cut(s)	182, 227
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	115
BstSCI	CCNGG	1 cut(s)	113
Bsu36I	CCTNAGG	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	313
BtsCI	GGATG	2 cut(s)	182, 227
Cac8I	GCNNGC	2 cut(s)	41, 130
Cfr10I	RCCGGY	1 cut(s)	216
Cfr13I	GGNCC	2 cut(s)	264, 300
Csp6I	GTAC	2 cut(s)	33, 249
CspAI	ACCGGT	1 cut(s)	216
CviJI	RGCY	6 cut(s)	83, 104, 143, 194, 306, 313
CviKI_1	RGCY	6 cut(s)	83, 104, 143, 194, 306, 313
CviQI	GTAC	2 cut(s)	33, 249
DdeI	CTNAG	2 cut(s)	139, 308
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	264, 300
Eco81I	CCTNAGG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	264
EcoRII	CCWGG	1 cut(s)	113
FaiI	YATR	6 cut(s)	48, 56, 73, 75, 202, 257
FaqI	GGGAC	1 cut(s)	112
Fnu4HI	GCNGC	1 cut(s)	314
FokI	GGATG	2 cut(s)	169, 214
Fsp4HI	GCNGC	1 cut(s)	314
FspBI	CTAG	1 cut(s)	59
GluI	GCNGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	313
HapII	CCGG	2 cut(s)	186, 217
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	2 cut(s)	186, 217
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	3 cut(s)	153, 297, 329
Hpy188III	TCNNGA	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	89, 177, 281
HpyCH4IV	ACGT	2 cut(s)	31, 337
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	139, 308
HpySE526I	ACGT	2 cut(s)	31, 337
LpnPI	CCDG	7 cut(s)	25, 100, 127, 176, 199, 230, 316
LweI	GCATC	3 cut(s)	16, 236, 320
MaeI	CTAG	1 cut(s)	59
MaeII	ACGT	2 cut(s)	31, 337
MboII	GAAGA	1 cut(s)	290
MhlI	GDGCHC	1 cut(s)	130
MluCI	AATT	2 cut(s)	118, 172
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	4 cut(s)	94, 221, 247, 291
MslI	CAYNNNNRTG	1 cut(s)	328
MspI	CCGG	2 cut(s)	186, 217
MspR9I	CCNGG	1 cut(s)	115
Mva1269I	GAATGC	1 cut(s)	64
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	1 cut(s)	233
PaeR7I	CTCGAG	1 cut(s)	238
PctI	GAATGC	1 cut(s)	64
PinAI	ACCGGT	1 cut(s)	216
PkrI	GCNGC	1 cut(s)	315
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspPI	GGNCC	2 cut(s)	264, 300
PspPPI	RGGWCCY	1 cut(s)	264
PspXI	VCTCGAGB	1 cut(s)	238
RsaI	GTAC	2 cut(s)	34, 250
RsaNI	GTAC	2 cut(s)	33, 249
RseI	CAYNNNNRTG	1 cut(s)	328
SatI	GCNGC	1 cut(s)	314
Sau96I	GGNCC	2 cut(s)	264, 300
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	115
SduI	GDGCHC	1 cut(s)	130
SetI	ASST	7 cut(s)	34, 106, 116, 145, 269, 292, 340
SfaNI	GCATC	3 cut(s)	16, 236, 320
Sfr274I	CTCGAG	1 cut(s)	238
SgrAI	CRCCGGYG	1 cut(s)	216
SinI	GGWCC	2 cut(s)	264, 300
SlaI	CTCGAG	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	328
SmlI	CTYRAG	1 cut(s)	238
SmoI	CTYRAG	1 cut(s)	238
Sse9I	AATT	2 cut(s)	118, 172
SsiI	CCGC	2 cut(s)	234, 314
SspMI	CTAG	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	113
TaiI	ACGT	2 cut(s)	34, 340
TaqI	TCGA	3 cut(s)	10, 159, 239
TasI	AATT	2 cut(s)	118, 172
TauI	GCSGC	1 cut(s)	316
TspDTI	ATGAA	2 cut(s)	32, 108
VpaK11BI	GGWCC	2 cut(s)	264, 300
XhoI	CTCGAG	1 cut(s)	238
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.