Rroxscaffold_2G00103670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004835
Physical Location & Seq
Reverse (-)
26649680 .. 26653205
3526 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00103670.1

Sequence Viewer

Length: 510 bp
ATGGGTGAACAAACAGTTATGCAAGGCAGAAAGAGAATAAGAAATATCATCTACCACTCTACCAAACTCTTGACAAATCTTCACCCTCAGCTTGTACCGCTTGGACTAGTTGCAGACAATCCGATTCGAAAACGACCTGAGCGAGCGGAAACTGTTCCACCAACTAACATGCTAGACGGCCGGCATAAGCTTCCCCCAAAACTGGAGTTAACACCATATCCACCCTGTTTGGCTCTGTCTCTGCCACAAGATGAAATCATAAGAAAGATATATGTTGGTCAGCTTGAAGAAAATGGAAGTCAAAGGCCACTCTCTAACGATTTCTCATTGGTTGAGCGAGCAATCACCGGGAAGTTTGAGAGGAACACAAGTTTGCTAAAGCGTGACTTTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGCCGGAAGTAACAATGGCGATTGTGCTCGCAGAGGTTCCCGGGGAGACCGGGACCGGAAGTACGGTCGCCGGTTGAACCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

169

Amino Acids

19.28

Weight (kDa)

10.35

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AciI CCGC 2 cut(s) 98, 146
AcoI YGGCCR 1 cut(s) 178
AfaI GTAC 2 cut(s) 96, 488
AfiI CCNNNNNNNGG 1 cut(s) 202
AgeI ACCGGT 1 cut(s) 504
AgsI TTSAA 2 cut(s) 287, 502
AhlI ACTAGT 1 cut(s) 106
AluBI AGCT 4 cut(s) 91, 190, 283, 393
AluI AGCT 4 cut(s) 91, 190, 283, 393
Alw21I GWGCWC 1 cut(s) 454
Alw26I GTCTC 2 cut(s) 243, 465
Ama87I CYCGRG 1 cut(s) 465
AoxI GGCC 2 cut(s) 178, 305
ArsI GACNNNNNNTTYG 2 cut(s) 377, 409
AsiGI ACCGGT 1 cut(s) 504
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 478
AsuC2I CCSGG 5 cut(s) 349, 400, 466, 467, 476
AsuHPI GGTGA 3 cut(s) 17, 74, 337
AsuII TTCGAA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 465
AvaII GGWCC 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 454
BbvCI CCTCAGC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 193
BcnI CCSGG 5 cut(s) 349, 400, 466, 467, 476
BcoDI GTCTC 2 cut(s) 243, 465
BcuI ACTAGT 1 cut(s) 106
BfaI CTAG 2 cut(s) 107, 173
Bme1390I CCNGG 5 cut(s) 349, 400, 466, 467, 476
Bme18I GGWCC 1 cut(s) 478
BmeT110I CYCGRG 1 cut(s) 465
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 2 cut(s) 463, 479
BmrFI CCNGG 5 cut(s) 349, 400, 466, 467, 476
BpmI CTGGAG 1 cut(s) 224
Bpu10I CCTNAGC 2 cut(s) 87, 138
Bpu14I TTCGAA 1 cut(s) 127
BpuMI CCSGG 5 cut(s) 349, 400, 466, 467, 476
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 2 cut(s) 465, 466
BsaWI WCCGGW 2 cut(s) 480, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 202
Bse118I RCCGGY 3 cut(s) 180, 495, 504
Bse1I ACTGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 465, 466
BseLI CCNNNNNNNGG 1 cut(s) 202
BseMII CTCAG 2 cut(s) 101, 129
BseNI ACTGG 1 cut(s) 207
BseX3I CGGCCG 1 cut(s) 178
Bsh1285I CGRYCG 2 cut(s) 181, 493
BshFI GGCC 2 cut(s) 180, 307
BshTI ACCGGT 1 cut(s) 504
BsiEI CGRYCG 2 cut(s) 181, 493
BsiHKAI GWGCWC 1 cut(s) 454
BsiHKCI CYCGRG 1 cut(s) 465
BsiSI CCGG 9 cut(s) 181, 348, 399, 429, 466, 475, 481, 496, 505
BslFI GGGAC 1 cut(s) 491
BslI CCNNNNNNNGG 1 cut(s) 202
BsmAI GTCTC 2 cut(s) 243, 465
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 2 cut(s) 180, 307
Bso31I GGTCTC 1 cut(s) 465
BsoBI CYCGRG 1 cut(s) 465
Bsp119I TTCGAA 1 cut(s) 127
Bsp1286I GDGCHC 1 cut(s) 454
BspACI CCGC 2 cut(s) 98, 146
BspANI GGCC 2 cut(s) 180, 307
BspCNI CTCAG 2 cut(s) 100, 130
BspLI GGNNCC 2 cut(s) 463, 479
BspT104I TTCGAA 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 465
BsrBI CCGCTC 1 cut(s) 146
BsrFI RCCGGY 3 cut(s) 180, 495, 504
BsrI ACTGG 1 cut(s) 207
BssAI RCCGGY 3 cut(s) 180, 495, 504
BssECI CCNNGG 2 cut(s) 465, 466
Bst4CI ACNGT 3 cut(s) 16, 154, 491
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 4 cut(s) 144, 182, 339, 454
BstDEI CTNAG 2 cut(s) 87, 138
BstMAI GTCTC 2 cut(s) 243, 465
BstMCI CGRYCG 2 cut(s) 181, 493
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 5 cut(s) 347, 398, 464, 465, 474
BstZI CGGCCG 1 cut(s) 178
BsuRI GGCC 2 cut(s) 180, 307
Cac8I GCNNGC 4 cut(s) 144, 182, 339, 454
Cfr10I RCCGGY 3 cut(s) 180, 495, 504
Cfr13I GGNCC 1 cut(s) 478
Cfr9I CCCGGG 1 cut(s) 465
Csp6I GTAC 2 cut(s) 95, 487
CspAI ACCGGT 1 cut(s) 504
CspCI CAANNNNNGTGG 2 cut(s) 210, 245
CviAII CATG 1 cut(s) 169
CviJI RGCY 7 cut(s) 91, 180, 190, 233, 283, 307, 393
CviKI_1 RGCY 7 cut(s) 91, 180, 190, 233, 283, 307, 393
CviQI GTAC 2 cut(s) 95, 487
DdeI CTNAG 2 cut(s) 87, 138
EaeI YGGCCR 1 cut(s) 178
EagI CGGCCG 1 cut(s) 178
EclXI CGGCCG 1 cut(s) 178
Eco31I GGTCTC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 478
Eco52I CGGCCG 1 cut(s) 178
Eco88I CYCGRG 1 cut(s) 465
FaeI CATG 1 cut(s) 172
FaiI YATR 7 cut(s) 20, 170, 186, 217, 260, 271, 273
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 1 cut(s) 491
FatI CATG 1 cut(s) 168
FspBI CTAG 2 cut(s) 107, 173
GsuI CTGGAG 1 cut(s) 224
HaeIII GGCC 2 cut(s) 180, 307
HapII CCGG 9 cut(s) 181, 348, 399, 429, 466, 475, 481, 496, 505
Hin1II CATG 1 cut(s) 172
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 124
HpaI GTTAAC 1 cut(s) 210
HpaII CCGG 9 cut(s) 181, 348, 399, 429, 466, 475, 481, 496, 505
HphI GGTGA 3 cut(s) 17, 74, 337
Hpy166II GTNNAC 2 cut(s) 8, 210
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 2 cut(s) 8, 210
HpyCH4III ACNGT 3 cut(s) 16, 154, 491
HpyCH4V TGCA 2 cut(s) 22, 113
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 2 cut(s) 87, 138
Hsp92II CATG 1 cut(s) 172
KroI GCCGGC 1 cut(s) 180
KroNI GCCGGC 1 cut(s) 182
KspAI GTTAAC 1 cut(s) 210
MaeI CTAG 2 cut(s) 107, 173
MaeIII GTNAC 3 cut(s) 383, 413, 434
MbiI CCGCTC 1 cut(s) 146
MboII GAAGA 2 cut(s) 71, 299
MhlI GDGCHC 1 cut(s) 454
MnlI CCTC 4 cut(s) 96, 354, 401, 452
MroNI GCCGGC 1 cut(s) 180
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 1 cut(s) 209
MspI CCGG 9 cut(s) 181, 348, 399, 429, 466, 475, 481, 496, 505
MspR9I CCNGG 5 cut(s) 349, 400, 466, 467, 476
MwoI GCNNNNNNNGC 1 cut(s) 97
NaeI GCCGGC 1 cut(s) 182
NciI CCSGG 5 cut(s) 349, 400, 466, 467, 476
NgoMIV GCCGGC 1 cut(s) 180
NlaIII CATG 1 cut(s) 172
NlaIV GGNNCC 2 cut(s) 463, 479
NmuCI GTSAC 1 cut(s) 383
NspI RCATGY 1 cut(s) 172
NspV TTCGAA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PdiI GCCGGC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 124
PinAI ACCGGT 1 cut(s) 504
PspN4I GGNNCC 2 cut(s) 463, 479
PspPI GGNCC 1 cut(s) 478
RsaI GTAC 2 cut(s) 96, 488
RsaNI GTAC 2 cut(s) 95, 487
SaqAI TTAA 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 478
ScrFI CCNGG 5 cut(s) 349, 400, 466, 467, 476
SduI GDGCHC 1 cut(s) 454
SetI ASST 6 cut(s) 93, 139, 192, 285, 395, 463
SfuI TTCGAA 1 cut(s) 127
SinI GGWCC 1 cut(s) 478
SmaI CCCGGG 1 cut(s) 467
SpeI ACTAGT 1 cut(s) 106
SsiI CCGC 2 cut(s) 98, 146
SspMI CTAG 2 cut(s) 107, 173
StyD4I CCNGG 5 cut(s) 347, 398, 464, 465, 474
TaaI ACNGT 3 cut(s) 16, 154, 491
TaqI TCGA 1 cut(s) 127
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseFI GTSAC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 383
TspDTI ATGAA 1 cut(s) 267
TspMI CCCGGG 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 478
XceI RCATGY 1 cut(s) 172
XmaI CCCGGG 1 cut(s) 465
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 2 cut(s) 107, 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.