Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Reverse (-)

6322466 .. 6334829

Gene Structure 12364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00223240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTGTGCACATAGAAGTACCAAAAACACGTATGAGAGCTTAAGCTCCACTACCGAGCAGTCATCACACCGATCATCGCACGATTCCACCGGTCATCACCCAGATATTCATCATCACATAGATTTTGCCGGTCATCACGCAGATAACAATTATCCTACTAATCATCAAATAGATATCGTTGGTCATCACATAGATAGCGATCATCACATAGATTTCGCTGGTCATCACATAGATTTCGTTGGTCATCACATAGATAGTGATCATCACATAGATTCATGGCTATGTTGTAGACTAAGCGAGCAATCACCGGGAAGTTGGGAGAAGCACGGGGTTTTGCTAAAGCGTGACTTTAGCTTCGCCGGGTTGCGAGGGCGTTACCCTTGCTTCGCTGGTAGTATCGGTGGTCGTAGCACTAGCAATCGGCTCTTGGAGAGACTAGGACCGGAAGCACGGTCGCCGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.27

Weight (kDa)

6.4

Isoelectric Point (pI)

62.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	289
AfaI	GTAC	1 cut(s)	19
AflII	CTTAAG	1 cut(s)	40
AflIII	ACRYGT	1 cut(s)	27
AgeI	ACCGGT	1 cut(s)	89
AluBI	AGCT	3 cut(s)	39, 45, 354
AluI	AGCT	3 cut(s)	39, 45, 354
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	427
Alw44I	GTGCAC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	6
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
AsiGI	ACCGGT	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	440
AsuC2I	CCSGG	3 cut(s)	309, 361, 459
AsuHPI	GGTGA	2 cut(s)	89, 297
AvaII	GGWCC	1 cut(s)	440
BaeGI	GKGCMC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BclI	TGATCA	1 cut(s)	259
BcnI	CCSGG	3 cut(s)	309, 361, 459
BcoDI	GTCTC	1 cut(s)	427
BfaI	CTAG	2 cut(s)	414, 437
BfrI	CTTAAG	1 cut(s)	40
Bme1390I	CCNGG	3 cut(s)	309, 361, 459
Bme18I	GGWCC	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	440
BmrFI	CCNGG	3 cut(s)	309, 361, 459
BpuMI	CCSGG	3 cut(s)	309, 361, 459
BsaAI	YACGTR	1 cut(s)	30
BsaBI	GATNNNNATC	3 cut(s)	108, 198, 258
BsaWI	WCCGGW	2 cut(s)	89, 442
Bse118I	RCCGGY	2 cut(s)	89, 128
Bse8I	GATNNNNATC	3 cut(s)	108, 198, 258
BseJI	GATNNNNATC	3 cut(s)	108, 198, 258
BseSI	GKGCMC	1 cut(s)	10
Bsh1285I	CGRYCG	1 cut(s)	455
BshTI	ACCGGT	1 cut(s)	89
BsiEI	CGRYCG	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	6 cut(s)	90, 129, 308, 360, 443, 458
BsmAI	GTCTC	1 cut(s)	427
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	71, 199, 259
BspTI	CTTAAG	1 cut(s)	40
BsrFI	RCCGGY	2 cut(s)	89, 128
BssAI	RCCGGY	2 cut(s)	89, 128
BssMI	GATC	3 cut(s)	71, 199, 259
Bst4CI	ACNGT	1 cut(s)	453
BstAFI	CTTAAG	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	293
BstKTI	GATC	3 cut(s)	74, 202, 262
BstMAI	GTCTC	1 cut(s)	427
BstMBI	GATC	3 cut(s)	71, 199, 259
BstMCI	CGRYCG	1 cut(s)	455
BstSCI	CCNGG	3 cut(s)	307, 359, 457
BstSLI	GKGCMC	1 cut(s)	10
BtgZI	GCGATG	1 cut(s)	60
Cac8I	GCNNGC	1 cut(s)	299
Cfr10I	RCCGGY	2 cut(s)	89, 128
Cfr13I	GGNCC	1 cut(s)	440
Csp6I	GTAC	1 cut(s)	18
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	5 cut(s)	39, 45, 280, 354, 424
CviKI_1	RGCY	5 cut(s)	39, 45, 280, 354, 424
CviQI	GTAC	1 cut(s)	18
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	3 cut(s)	73, 201, 261
DpnII	GATC	3 cut(s)	71, 199, 259
Eco32I	GATATC	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	175
FaeI	CATG	1 cut(s)	279
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FatI	CATG	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	259
FblI	GTMKAC	1 cut(s)	289
FspBI	CTAG	2 cut(s)	414, 437
HapII	CCGG	6 cut(s)	90, 129, 308, 360, 443, 458
Hin1II	CATG	1 cut(s)	279
HinfI	GANTC	2 cut(s)	83, 272
HpaII	CCGG	6 cut(s)	90, 129, 308, 360, 443, 458
HphI	GGTGA	2 cut(s)	89, 297
Hpy166II	GTNNAC	2 cut(s)	8, 290
Hpy8I	GTNNAC	2 cut(s)	8, 290
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	29
HpyCH4V	TGCA	1 cut(s)	8
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	279
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	71, 199, 259
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	8 cut(s)	103, 114, 142, 204, 321, 373, 375, 456
MaeI	CTAG	2 cut(s)	414, 437
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	2 cut(s)	344, 374
MalI	GATC	3 cut(s)	73, 201, 261
MboI	GATC	3 cut(s)	71, 199, 259
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	148
MnlI	CCTC	1 cut(s)	362
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	40
MspI	CCGG	6 cut(s)	90, 129, 308, 360, 443, 458
MspR9I	CCNGG	3 cut(s)	309, 361, 459
NciI	CCSGG	3 cut(s)	309, 361, 459
NdeII	GATC	3 cut(s)	71, 199, 259
NlaIII	CATG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	83, 272
PinAI	ACCGGT	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	30
PspPI	GGNCC	1 cut(s)	440
RsaI	GTAC	1 cut(s)	19
RsaNI	GTAC	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	3 cut(s)	71, 199, 259
Sau96I	GGNCC	1 cut(s)	440
ScrFI	CCNGG	3 cut(s)	309, 361, 459
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	4 cut(s)	32, 41, 47, 356
SinI	GGWCC	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	148
SspMI	CTAG	2 cut(s)	414, 437
StyD4I	CCNGG	3 cut(s)	307, 359, 457
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	32
TasI	AATT	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	83, 272
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	2 cut(s)	98, 264
Vha464I	CTTAAG	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	6
VpaK11BI	GGWCC	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	289
XspI	CTAG	2 cut(s)	414, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.