Rmu_sc0021866.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021866.1
OG0004835
Physical Location & Seq
Forward (+)
1 .. 1262
1262 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021866.1_g000001.1.cds

Sequence Viewer

Length: 279 bp
gcgtgccagcaccgtggggtgcagtcgtcgggggggtcccttgacctgacttcttcttcaagcgttgtggacgaggagagcactaacctcgccacaaggctgagcagagcagagcaatcactgggaagtttggagaaagcacgggttttgctaaagcgtgactttagcttcgctgggttgcgagggcgttacccttgctttgctggtggtatcgatggcagtagcactggcagccagctctcggagagactaggactggaagcacggtcgccgggttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.62

Weight (kDa)

8.08

Isoelectric Point (pI)

56.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 60
AluBI AGCT 2 cut(s) 168, 238
AluI AGCT 2 cut(s) 168, 238
Alw21I GWGCWC 1 cut(s) 83
Alw26I GTCTC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 231
ArsI GACNNNNNNTTYG 2 cut(s) 152, 184
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 243
BccI CCATC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 70, 104
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 1 cut(s) 241
BfaI CTAG 1 cut(s) 251
BisI GCNGC 1 cut(s) 232
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 273
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 2 cut(s) 37, 38
BmrFI CCNGG 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 101
BpuMI CCSGG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 3 cut(s) 126, 232, 261
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 3 cut(s) 126, 232, 261
BseRI GAGGAG 1 cut(s) 89
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 173
BsgI GTGCAG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 269
BshVI ATCGAT 1 cut(s) 213
BsiEI CGRYCG 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 272
BslFI GGGAC 1 cut(s) 22
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 22
Bsp1286I GDGCHC 1 cut(s) 83
Bsp1720I GCTNAGC 1 cut(s) 101
BspCNI CTCAG 1 cut(s) 93
BspDI ATCGAT 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 37, 38
BsrI ACTGG 3 cut(s) 126, 232, 261
BssECI CCNNGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 14, 267
BstC8I GCNNGC 3 cut(s) 4, 8, 236
BstDEI CTNAG 1 cut(s) 101
BstDSI CCRYGG 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 241
BstMCI CGRYCG 1 cut(s) 269
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 271
BstV1I GCAGC 1 cut(s) 243
BstXI CCANNNNNNTGG 1 cut(s) 14
Bsu15I ATCGAT 1 cut(s) 213
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 1 cut(s) 13
BtsIMutI CAGTG 2 cut(s) 119, 225
Cac8I GCNNGC 3 cut(s) 4, 8, 236
Cfr13I GGNCC 1 cut(s) 36
ClaI ATCGAT 1 cut(s) 213
CspCI CAANNNNNGTGG 2 cut(s) 48, 83
CviJI RGCY 4 cut(s) 100, 168, 234, 238
CviKI_1 RGCY 4 cut(s) 100, 168, 234, 238
DdeI CTNAG 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 146, 178
FaqI GGGAC 1 cut(s) 22
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 232
GsaI CCCAGC 1 cut(s) 177
HapII CCGG 1 cut(s) 272
HpaII CCGG 1 cut(s) 272
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 244
Hpy8I GTNNAC 1 cut(s) 70
Hpy99I CGWCG 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 14, 267
HpyCH4V TGCA 1 cut(s) 22
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
HpyF3I CTNAG 1 cut(s) 101
KflI GGGWCCC 1 cut(s) 36
LpnPI CCDG 8 cut(s) 20, 59, 107, 159, 189, 213, 242, 248
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 1 cut(s) 251
MaeIII GTNAC 2 cut(s) 158, 188
MboII GAAGA 2 cut(s) 45, 48
MhlI GDGCHC 1 cut(s) 83
MnlI CCTC 3 cut(s) 67, 98, 176
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 273
MwoI GCNNNNNNNGC 1 cut(s) 231
NciI CCSGG 1 cut(s) 273
NlaIV GGNNCC 2 cut(s) 37, 38
NmuCI GTSAC 1 cut(s) 158
PkrI GCNGC 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
PspFI CCCAGC 1 cut(s) 173
PspN4I GGNNCC 2 cut(s) 37, 38
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
SatI GCNGC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 273
SduI GDGCHC 1 cut(s) 83
SetI ASST 4 cut(s) 48, 90, 170, 240
SinI GGWCC 1 cut(s) 36
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 14, 267
TaqI TCGA 1 cut(s) 213
TscAI CASTG 2 cut(s) 126, 232
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 1 cut(s) 158
TspRI CASTG 2 cut(s) 126, 232
VpaK11BI GGWCC 1 cut(s) 36
XspI CTAG 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.