Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000106.1

Orthogroup ID

OG0004835

Physical Location & Seq

Genomic Coordinates Reverse (-)

3355 .. 5778

Gene Structure 2424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000106.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

atggcaaactacagacgagccaagctcgcagtcgacgcctttcgtggctttacatcaagaatcgtaactagaccagagcccgtctccggagtcttctccaccaagtcttcatctttggcctcagaaccagccaagatttctgggttttctccttcccattctattttacacaaaccaattccacacacacagttgagatattatcatgtggatcggcggcattttgatcctcgcggacctcgccgatgggctgaccggttcaagagatatttgatttaccccggaattttattcctgttgttactattgtggagggtggtggggttttttatcaccaattatgagacactgccatacactaaacgttggctttttataattctgtcaactgatttggagaggaagctgggagagtcgcaatttgaggaaatgaaagcttcacaatttgaggggaagattttgctggctatacacccggaaagagcgaggattagggaagttgagactgtgcaggcattgatgaatggtgaagaggggaaaatggaagggaagtgttcacttgaggatgagaagaagggaaaggatattggtgttaaagacgctacttcgcatttggttggcttgaattgggaggtattggtggtggatgagccgattgtcaatgcgtattgcttgccgggtgggaagattgtggttcgcaaaatgcagctggtatcagcatacaggtctttgactctttgccgagtttacaagaaaaagaagcaaggggaggaagatttggcggtggtggccgtggtggtagtaggtttggtggaagaggaggtggcaggggtttctctaatggaagaaatgataggtttggtggcggaagaggccgcggcaactacaacagatggtgaagcccacagtgttagatcaaatttcagtgattcagtccttgtgttaagttcgtctgctgcaatgtctatcaagtgtgaggctatgcccctaccacaagatgaagtcatgacaaatatatgtggaggtcaacttgaagaaaatggaagtctgaagccactctctgatgatttctcgttggttttcaaaacgagaaccaacaataaggagaaatctaacaatcctttgcggaggccggttttcaataaccaagaatgggaagttctcttcaagaatgtgattgatgaggatacgacatttgactgtcactcttccaaaaactcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

407

Amino Acids

45.86

Weight (kDa)

7.12

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004835)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g13281
rosa_chinensis	RchiOBHm_Chr1g0356191 RchiOBHm_Chr1g0375381
rosa_laevigata	RLG00000026665
rosa_multiflora	Rmu_sc0000517.1_g000006 Rmu_sc0000554.1_g000042 Rmu_sc0002609.1_g000001 Rmu_sc0021866.1_g000001 Rmu_ssc0000106.1_g000002
rosa_roxburghii	Rroxscaffold_165G00436950 Rroxscaffold_1G00049280 Rroxscaffold_2G00085540 Rroxscaffold_2G00101950 Rroxscaffold_2G00103670 Rroxscaffold_2G00136280 Rroxscaffold_3G00219990 Rroxscaffold_3G00223240 Rroxscaffold_3G00230840 Rroxscaffold_3G00248820 Rroxscaffold_4G00312690 Rroxscaffold_4G00320990 Rroxscaffold_5G00348860 Rroxscaffold_5G00356520 Rroxscaffold_6G00409490 Rroxscaffold_6G00411400 Rroxscaffold_7G00176940
rosa_rugosa	Rorug02G0028800
rosa_samantha	Rh1AG401200 Rh1BG362900 Rh1CG376400 Rh1DG393700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	234, 878
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	7 cut(s)	217, 234, 782, 866, 876, 878, 1126
AclI	AACGTT	1 cut(s)	364
AclWI	GGATC	2 cut(s)	219, 221
AcoI	YGGCCR	1 cut(s)	789
AcsI	RAATTY	2 cut(s)	285, 919
AcuI	CTGAAG	1 cut(s)	1070
AcyI	GRCGYC	1 cut(s)	36
AfiI	CCNNNNNNNGG	2 cut(s)	86, 1153
AgeI	ACCGGT	1 cut(s)	255
AgsI	TTSAA	6 cut(s)	262, 625, 1034, 1084, 1141, 1168
AluBI	AGCT	4 cut(s)	25, 406, 437, 709
AluI	AGCT	4 cut(s)	25, 406, 437, 709
Alw26I	GTCTC	3 cut(s)	88, 338, 497
AlwI	GGATC	2 cut(s)	219, 221
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	4 cut(s)	117, 789, 873, 1130
ApeKI	GCWGC	2 cut(s)	706, 956
ApoI	RAATTY	2 cut(s)	285, 919
AsiGI	ACCGGT	1 cut(s)	255
AspS9I	GGNCC	1 cut(s)	236
AsuC2I	CCSGG	3 cut(s)	282, 476, 678
AsuHPI	GGTGA	3 cut(s)	325, 539, 908
AvaII	GGWCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	81
BauI	CACGAG	1 cut(s)	1219
BbsI	GAAGAC	2 cut(s)	85, 99
BbvI	GCAGC	2 cut(s)	718, 943
BccI	CCATC	2 cut(s)	240, 887
BceAI	ACGGC	1 cut(s)	776
BciVI	GTATCC	1 cut(s)	1180
BcnI	CCSGG	3 cut(s)	282, 476, 678
BcoDI	GTCTC	3 cut(s)	88, 338, 497
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	10
BfuI	GTATCC	1 cut(s)	1180
BisI	GCNGC	5 cut(s)	218, 707, 876, 879, 957
BlsI	GCNGC	5 cut(s)	219, 708, 877, 880, 958
Bme1390I	CCNGG	3 cut(s)	282, 476, 678
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmrFI	CCNGG	3 cut(s)	282, 476, 678
BpiI	GAAGAC	2 cut(s)	85, 99
BplI	GAGNNNNNCTC	4 cut(s)	9, 41, 68, 100
BpuEI	CTTGAG	1 cut(s)	581
BpuMI	CCSGG	3 cut(s)	282, 476, 678
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	280, 792, 876
BsaWI	WCCGGW	2 cut(s)	86, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 1153
Bse118I	RCCGGY	2 cut(s)	255, 1132
Bse3DI	GCAATG	1 cut(s)	966
BseAI	TCCGGA	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	280, 792, 876
BseGI	GGATG	2 cut(s)	571, 652
BseLI	CCNNNNNNNGG	2 cut(s)	86, 1153
BseMI	GCAATG	1 cut(s)	966
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	1 cut(s)	833
BseXI	GCAGC	2 cut(s)	718, 943
BseYI	CCCAGC	1 cut(s)	406
BsgI	GTGCAG	1 cut(s)	530
Bsh1236I	CGCG	2 cut(s)	234, 878
BshFI	GGCC	4 cut(s)	119, 791, 875, 1132
BshTI	ACCGGT	1 cut(s)	255
BsiSI	CCGG	6 cut(s)	87, 256, 282, 476, 677, 1133
BslI	CCNNNNNNNGG	2 cut(s)	86, 1153
BsmAI	GTCTC	3 cut(s)	88, 338, 497
BsmBI	CGTCTC	1 cut(s)	88
BsnI	GGCC	4 cut(s)	119, 791, 875, 1132
Bsp1286I	GDGCHC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	3 cut(s)	211, 226, 914
BspACI	CCGC	7 cut(s)	217, 234, 782, 866, 876, 878, 1126
BspANI	GGCC	4 cut(s)	119, 791, 875, 1132
BspCNI	CTCAG	1 cut(s)	134
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	2 cut(s)	234, 878
BspHI	TCATGA	1 cut(s)	1005
BspPI	GGATC	2 cut(s)	219, 221
BsrDI	GCAATG	1 cut(s)	966
BsrFI	RCCGGY	2 cut(s)	255, 1132
BssAI	RCCGGY	2 cut(s)	255, 1132
BssECI	CCNNGG	3 cut(s)	280, 792, 876
BssMI	GATC	3 cut(s)	211, 226, 914
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	1219
Bst2BI	CACGAG	1 cut(s)	1219
Bst4CI	ACNGT	4 cut(s)	192, 508, 908, 1202
Bst6I	CTCTTC	5 cut(s)	525, 810, 864, 1169, 1213
BstACI	GRCGYC	1 cut(s)	36
BstC8I	GCNNGC	4 cut(s)	27, 465, 513, 674
BstDEI	CTNAG	1 cut(s)	121
BstDSI	CCRYGG	2 cut(s)	792, 876
BstF5I	GGATG	2 cut(s)	571, 652
BstFNI	CGCG	2 cut(s)	234, 878
BstKTI	GATC	3 cut(s)	214, 229, 917
BstMAI	GTCTC	3 cut(s)	88, 338, 497
BstMBI	GATC	3 cut(s)	211, 226, 914
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 35, 240, 788, 872
BstSCI	CCNGG	3 cut(s)	280, 474, 676
BstSFI	CTRYAG	1 cut(s)	10
BstUI	CGCG	2 cut(s)	234, 878
BstV1I	GCAGC	2 cut(s)	718, 943
BstV2I	GAAGAC	2 cut(s)	85, 99
BsuI	GTATCC	1 cut(s)	1180
BsuRI	GGCC	4 cut(s)	119, 791, 875, 1132
BtgI	CCRYGG	2 cut(s)	792, 876
BtsCI	GGATG	2 cut(s)	571, 652
BtsI	GCAGTG	1 cut(s)	347
BtsIMutI	CAGTG	3 cut(s)	347, 913, 931
Cac8I	GCNNGC	4 cut(s)	27, 465, 513, 674
CciI	TCATGA	1 cut(s)	1005
Cfr10I	RCCGGY	2 cut(s)	255, 1132
Cfr13I	GGNCC	1 cut(s)	236
Cfr42I	CCGCGG	1 cut(s)	879
CseI	GACGC	2 cut(s)	44, 608
CspAI	ACCGGT	1 cut(s)	255
CviAII	CATG	2 cut(s)	206, 1006
DdeI	CTNAG	1 cut(s)	121
DpnI	GATC	3 cut(s)	213, 228, 916
DpnII	GATC	3 cut(s)	211, 226, 914
EaeI	YGGCCR	1 cut(s)	789
Eam1104I	CTCTTC	5 cut(s)	525, 810, 864, 1169, 1213
EarI	CTCTTC	5 cut(s)	525, 810, 864, 1169, 1213
EciI	GGCGGA	1 cut(s)	881
Eco24I	GRGCYC	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	1070
EcoT38I	GRGCYC	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	88
FaeI	CATG	2 cut(s)	209, 1009
FatI	CATG	2 cut(s)	205, 1005
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	5 cut(s)	218, 707, 876, 879, 957
FokI	GGATG	2 cut(s)	578, 659
FriOI	GRGCYC	1 cut(s)	81
Fsp4HI	GCNGC	5 cut(s)	218, 707, 876, 879, 957
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	5 cut(s)	218, 707, 876, 879, 957
GsaI	CCCAGC	1 cut(s)	410
HaeIII	GGCC	4 cut(s)	119, 791, 875, 1132
HapII	CCGG	6 cut(s)	87, 256, 282, 476, 677, 1133
HgaI	GACGC	2 cut(s)	44, 608
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	2 cut(s)	209, 1009
HincII	GTYRAC	3 cut(s)	34, 387, 1028
HindII	GTYRAC	3 cut(s)	34, 387, 1028
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	5 cut(s)	60, 90, 413, 733, 929
HpaII	CCGG	6 cut(s)	87, 256, 282, 476, 677, 1133
HphI	GGTGA	3 cut(s)	325, 539, 908
Hpy166II	GTNNAC	5 cut(s)	34, 387, 557, 748, 1028
Hpy188I	TCNGA	3 cut(s)	124, 1050, 1063
Hpy188III	TCNNGA	6 cut(s)	57, 87, 262, 1006, 1168, 1221
Hpy8I	GTNNAC	5 cut(s)	34, 387, 557, 748, 1028
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	3 cut(s)	162, 539, 568
HpyCH4III	ACNGT	4 cut(s)	192, 508, 908, 1202
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	3 cut(s)	511, 706, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 35, 240, 788, 872
HpyF3I	CTNAG	1 cut(s)	121
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	209, 1009
Kpn2I	TCCGGA	1 cut(s)	86
KspI	CCGCGG	1 cut(s)	879
Kzo9I	GATC	3 cut(s)	211, 226, 914
Lsp1109I	GCAGC	2 cut(s)	718, 943
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	3 cut(s)	64, 300, 1202
MalI	GATC	3 cut(s)	213, 228, 916
MboI	GATC	3 cut(s)	211, 226, 914
MhlI	GDGCHC	1 cut(s)	81
MluCI	AATT	8 cut(s)	177, 285, 337, 378, 419, 443, 625, 919
MlyI	GAGTC	3 cut(s)	99, 422, 727
MroI	TCCGGA	1 cut(s)	86
MseI	TTAA	2 cut(s)	594, 944
MspA1I	CMGCKG	2 cut(s)	709, 878
MspI	CCGG	6 cut(s)	87, 256, 282, 476, 677, 1133
MspR9I	CCNGG	3 cut(s)	282, 476, 678
MvnI	CGCG	2 cut(s)	234, 878
MwoI	GCNNNNNNNGC	5 cut(s)	26, 35, 240, 788, 872
NciI	CCSGG	3 cut(s)	282, 476, 678
NdeII	GATC	3 cut(s)	211, 226, 914
NlaIII	CATG	2 cut(s)	209, 1009
NmeAIII	GCCGAG	1 cut(s)	767
NmuCI	GTSAC	1 cut(s)	1202
PagI	TCATGA	1 cut(s)	1005
PfeI	GAWTC	2 cut(s)	60, 929
PinAI	ACCGGT	1 cut(s)	255
PkrI	GCNGC	5 cut(s)	219, 708, 877, 880, 958
PleI	GAGTC	3 cut(s)	98, 421, 727
PpsI	GAGTC	3 cut(s)	98, 421, 727
PsiI	TTATAA	1 cut(s)	377
Psp1406I	AACGTT	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	406
PspPI	GGNCC	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	709
SacII	CCGCGG	1 cut(s)	879
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	594, 944
SatI	GCNGC	5 cut(s)	218, 707, 876, 879, 957
Sau3AI	GATC	3 cut(s)	211, 226, 914
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	3 cut(s)	99, 422, 727
ScrFI	CCNGG	3 cut(s)	282, 476, 678
SduI	GDGCHC	1 cut(s)	81
SfcI	CTRYAG	1 cut(s)	10
Sfr303I	CCGCGG	1 cut(s)	879
SgrBI	CCGCGG	1 cut(s)	879
SinI	GGWCC	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	8 cut(s)	177, 285, 337, 378, 419, 443, 625, 919
SsiI	CCGC	7 cut(s)	217, 234, 782, 866, 876, 878, 1126
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	3 cut(s)	280, 474, 676
TaaI	ACNGT	4 cut(s)	192, 508, 908, 1202
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	33
TasI	AATT	8 cut(s)	177, 285, 337, 378, 419, 443, 625, 919
TauI	GCSGC	3 cut(s)	220, 878, 881
TfiI	GAWTC	2 cut(s)	60, 929
Tru1I	TTAA	2 cut(s)	594, 944
Tru9I	TTAA	2 cut(s)	594, 944
TscAI	CASTG	3 cut(s)	354, 913, 931
TseFI	GTSAC	1 cut(s)	1202
TseI	GCWGC	2 cut(s)	706, 956
Tsp45I	GTSAC	1 cut(s)	1202
TspDTI	ATGAA	4 cut(s)	99, 446, 536, 1014
TspRI	CASTG	3 cut(s)	354, 913, 931
VpaK11BI	GGWCC	1 cut(s)	236
XapI	RAATTY	2 cut(s)	285, 919
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.