RchiOBHm_Chr1g0376701

Arginine serine-rich-splicing factor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
63899298 .. 63903393
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1134 bp
ATGAGGCCCATTTTTTGTGGGAATTTTGAGTATGATGCTCGACAAAATGATCTGGAGCGGCTTTTTGGAAGATATGGGAAGGTTGATAGAGTGGATATGAAGGCTGGTTTTGCATTCATTTACATGGATGACGAGAGAGATGCTGACTATGCAATACGGGGACTCGATCGGAGAGAATTTGGTCGAAAAGGGCGCAGGCTTCGTGTTGAATGGTCAAAGGTATCCAGTCATGAGCGTGGTTCTAGAAGACCTGGTGCTTCAAGAAGGTCTTCAACTAATACAAGGCCGTCAAAGACCTTGTTTGTTATAAATTTTGATCCATATCACACCAGGACCAAGGATTTGGAGAGGCATTTTGATCCATATGGGAAAATAATAAGTGTAAGGATCCGAAGGAATTTCGCTTTTGTTCAGTATGAGTCACAGGAGGATGCTACTAGGGCACTGGAGGCTACAAACATGAGCAAGCTGATGGACCGAGTTATATCGGTTGAATATGCAGTTCGTGATGATGATGAAAGAAGAGATGGCTATAGCCCTGACAGGAGAAGTCGTGATAGGTCACTAGAGAGAGGCCGTGACAGAAGAAGATCCCCAAGTCCCTACAAAAGAGAGAGGGGAAGCCCTGATTATGGCCGTGGCCCTAGCCCTGGTCCATACCGGAGGGAGAGGGGTAGTCCTGATTATGGACGTGGCACAAGTCCTTACCGAAGGGAGAGAGCAAGCCCTGACTATGCCCGTGGGCGCAGCCCAAGTCCTTATAGGAGGGAGAGATCTGATCGTGGGAGGGTCTCCAGTCGTAGTCCCCGAAAAGAGAGGGTGAGTGTTGATCATGGCCGTGATCGCAGCCGCAGCCGTAGTCCTTATGTTGGAAGAGATAGGGCTGTTGCTGAAAATGGCCATGCTCCAAGTCCTAGTCCTCCTCCTTATAAGAGAGCTAGAGTTAGCCCGGAAAATGGTCATGGTCCCAGCAGTAGCCCTTATGAAGGAGAGAGGGCCAACAGCCCCGAAGAAGGTCGTATTCCAAGTCCCAACTCTGTGCCCGATGGCAAGGACAGCCCCAATTATGGTGGGCCTGAAAGCCCCATGCATGAGAGATATAACAGCCGTTCACCCCAAGCTGAGGAGGAATGA

Protein Analysis

377

Amino Acids

43.62

Weight (kDa)

10.19

Isoelectric Point (pI)

80.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 4 - 62 1.4e-12 RNA recognition motif
RRM_1 PF00076 100 - 162 4.3e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 308, 930
AccBSI CCGCTC 1 cut(s) 58
AciI CCGC 2 cut(s) 58, 850
AclWI GGATC 5 cut(s) 311, 353, 382, 395, 585
AcoI YGGCCR 3 cut(s) 634, 835, 898
AcsI RAATTY 4 cut(s) 22, 176, 310, 397
AfiI CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
AgsI TTSAA 4 cut(s) 209, 261, 273, 494
AjiI CACGTC 1 cut(s) 692
AjnI CCWGG 3 cut(s) 250, 329, 649
AluBI AGCT 3 cut(s) 469, 938, 1121
AluI AGCT 3 cut(s) 469, 938, 1121
Alw26I GTCTC 1 cut(s) 796
AlwI GGATC 5 cut(s) 311, 353, 382, 395, 585
AoxI GGCC 9 cut(s) 5, 284, 574, 634, 640, 835, 898, 996, 1073
ApeKI GCWGC 3 cut(s) 747, 846, 852
ApoI RAATTY 4 cut(s) 22, 176, 310, 397
ArsI GACNNNNNNTTYG 2 cut(s) 325, 357
Asp700I GAANNNNTTC 1 cut(s) 268
AspLEI GCGC 2 cut(s) 195, 747
AspS9I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
AsuC2I CCSGG 1 cut(s) 950
AsuHPI GGTGA 2 cut(s) 832, 1104
AvaII GGWCC 4 cut(s) 333, 475, 653, 965
BaeGI GKGCMC 2 cut(s) 445, 1044
BalI TGGCCA 1 cut(s) 900
BamHI GGATCC 1 cut(s) 387
BbsI GAAGAC 2 cut(s) 253, 261
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 3 cut(s) 759, 858, 864
BccI CCATC 3 cut(s) 466, 521, 1040
BceAI ACGGC 6 cut(s) 271, 561, 621, 822, 840, 1092
BcgI CGANNNNNNTGC 2 cut(s) 122, 156
BciT130I CCWGG 3 cut(s) 252, 331, 651
BciVI GTATCC 1 cut(s) 232
BclI TGATCA 1 cut(s) 829
BcnI CCSGG 1 cut(s) 950
BcoDI GTCTC 1 cut(s) 796
BfaI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
BfmI CTRYAG 1 cut(s) 532
BfuI GTATCC 1 cut(s) 232
BglII AGATCT 1 cut(s) 773
BisI GCNGC 5 cut(s) 59, 748, 847, 850, 853
BlsI GCNGC 5 cut(s) 60, 749, 848, 851, 854
Bme1390I CCNGG 4 cut(s) 252, 331, 651, 950
Bme18I GGWCC 4 cut(s) 333, 475, 653, 965
BmgBI CACGTC 1 cut(s) 692
BmgT120I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
BmiI GGNNCC 2 cut(s) 389, 967
BmrFI CCNGG 4 cut(s) 252, 331, 651, 950
BmsI GCATC 3 cut(s) 25, 130, 421
BpiI GAAGAC 2 cut(s) 253, 261
BpmI CTGGAG 3 cut(s) 74, 467, 778
Bpu10I CCTNAGC 1 cut(s) 1122
BpuMI CCSGG 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 321
BsaI GGTCTC 1 cut(s) 796
BsaJI CCNNGG 4 cut(s) 336, 637, 649, 739
BsaWI WCCGGW 1 cut(s) 660
BsaXI ACNNNNNCTCC 2 cut(s) 538, 568
Bsc4I CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
Bse1I ACTGG 3 cut(s) 225, 450, 795
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 3 cut(s) 252, 331, 651
BseDI CCNNGG 4 cut(s) 336, 637, 649, 739
BseGI GGATG 2 cut(s) 133, 436
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
BseMII CTCAG 1 cut(s) 1113
BseNI ACTGG 3 cut(s) 225, 450, 795
BseRI GAGGAG 1 cut(s) 912
BseSI GKGCMC 2 cut(s) 445, 1044
BseXI GCAGC 3 cut(s) 759, 858, 864
BseYI CCCAGC 1 cut(s) 968
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 9 cut(s) 7, 286, 576, 636, 642, 837, 900, 998, 1075
BsiEI CGRYCG 1 cut(s) 169
BsiSI CCGG 2 cut(s) 661, 950
BslFI GGGAC 5 cut(s) 174, 585, 789, 951, 1014
BslI CCNNNNNNNGG 9 cut(s) 632, 650, 686, 869, 956, 986, 1013, 1067, 1123
BsmAI GTCTC 1 cut(s) 796
BsmFI GGGAC 5 cut(s) 174, 585, 789, 951, 1014
BsmI GAATGC 1 cut(s) 113
BsnI GGCC 9 cut(s) 7, 286, 576, 636, 642, 837, 900, 998, 1075
Bso31I GGTCTC 1 cut(s) 796
Bsp1286I GDGCHC 2 cut(s) 445, 1044
BspACI CCGC 2 cut(s) 58, 850
BspANI GGCC 9 cut(s) 7, 286, 576, 636, 642, 837, 900, 998, 1075
BspCNI CTCAG 1 cut(s) 1114
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 389, 967
BspPI GGATC 5 cut(s) 311, 353, 382, 395, 585
BspTNI GGTCTC 1 cut(s) 796
BsrBI CCGCTC 1 cut(s) 58
BsrI ACTGG 3 cut(s) 225, 450, 795
BssECI CCNNGG 4 cut(s) 336, 637, 649, 739
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 3 cut(s) 252, 331, 651
Bst6I CTCTTC 2 cut(s) 517, 868
BstC8I GCNNGC 3 cut(s) 197, 467, 724
BstDEI CTNAG 1 cut(s) 1122
BstDSI CCRYGG 2 cut(s) 637, 739
BstENI CCTNNNNNAGG 1 cut(s) 984
BstF5I GGATG 2 cut(s) 133, 436
BstHHI GCGC 2 cut(s) 195, 747
BstMAI GTCTC 1 cut(s) 796
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 7 cut(s) 110, 149, 440, 449, 843, 852, 1056
BstNI CCWGG 3 cut(s) 252, 331, 651
BstSCI CCNGG 4 cut(s) 250, 329, 649, 948
BstSFI CTRYAG 1 cut(s) 532
BstSLI GKGCMC 2 cut(s) 445, 1044
BstV1I GCAGC 3 cut(s) 759, 858, 864
BstV2I GAAGAC 2 cut(s) 253, 261
BstX2I RGATCY 3 cut(s) 387, 590, 773
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 3 cut(s) 387, 590, 773
BsuI GTATCC 1 cut(s) 232
BsuRI GGCC 9 cut(s) 7, 286, 576, 636, 642, 837, 900, 998, 1075
BtgI CCRYGG 2 cut(s) 637, 739
BtrI CACGTC 1 cut(s) 692
BtsCI GGATG 2 cut(s) 133, 436
BtsIMutI CAGTG 1 cut(s) 443
Cac8I GCNNGC 3 cut(s) 197, 467, 724
CciI TCATGA 1 cut(s) 229
CfoI GCGC 2 cut(s) 195, 747
Cfr13I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
CsiI ACCWGGT 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 8 cut(s) 124, 230, 460, 833, 902, 962, 1087, 1091
DdeI CTNAG 1 cut(s) 1122
EaeI YGGCCR 3 cut(s) 634, 835, 898
Eam1104I CTCTTC 2 cut(s) 517, 868
EarI CTCTTC 2 cut(s) 517, 868
Eco130I CCWWGG 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 796
Eco47I GGWCC 4 cut(s) 333, 475, 653, 965
EcoNI CCTNNNNNAGG 1 cut(s) 984
EcoRII CCWGG 3 cut(s) 250, 329, 649
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 1092
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 8 cut(s) 127, 233, 463, 836, 905, 965, 1090, 1094
FalI AAGNNNNNCTT 2 cut(s) 253, 285
FaqI GGGAC 5 cut(s) 174, 585, 789, 951, 1014
FatI CATG 8 cut(s) 123, 229, 459, 832, 901, 961, 1086, 1090
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 829
Fnu4HI GCNGC 5 cut(s) 59, 748, 847, 850, 853
FokI GGATG 2 cut(s) 140, 443
Fsp4HI GCNGC 5 cut(s) 59, 748, 847, 850, 853
FspBI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
GlaI GCGC 2 cut(s) 194, 746
GluI GCNGC 5 cut(s) 59, 748, 847, 850, 853
GsaI CCCAGC 1 cut(s) 972
GsuI CTGGAG 3 cut(s) 74, 467, 778
HaeIII GGCC 9 cut(s) 7, 286, 576, 636, 642, 837, 900, 998, 1075
HapII CCGG 2 cut(s) 661, 950
HhaI GCGC 2 cut(s) 195, 747
Hin1II CATG 8 cut(s) 127, 233, 463, 836, 905, 965, 1090, 1094
Hin6I GCGC 2 cut(s) 193, 745
HinP1I GCGC 2 cut(s) 193, 745
HinfI GANTC 2 cut(s) 162, 419
HpaII CCGG 2 cut(s) 661, 950
HphI GGTGA 2 cut(s) 832, 1104
Hpy166II GTNNAC 1 cut(s) 1112
Hpy188I TCNGA 3 cut(s) 171, 392, 778
Hpy188III TCNNGA 7 cut(s) 53, 230, 243, 261, 506, 554, 680
Hpy8I GTNNAC 1 cut(s) 1112
HpyAV CCTTC 7 cut(s) 73, 94, 258, 387, 705, 980, 1007
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 4 cut(s) 113, 152, 500, 1090
HpyF10VI GCNNNNNNNGC 7 cut(s) 110, 149, 440, 449, 843, 852, 1056
HpyF3I CTNAG 1 cut(s) 1122
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 8 cut(s) 127, 233, 463, 836, 905, 965, 1090, 1094
HspAI GCGC 2 cut(s) 193, 745
Ksp22I TGATCA 1 cut(s) 829
LmnI GCTCC 2 cut(s) 55, 910
Lsp1109I GCAGC 3 cut(s) 759, 858, 864
LweI GCATC 3 cut(s) 25, 130, 421
MabI ACCWGGT 1 cut(s) 250
MaeI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
MaeII ACGT 1 cut(s) 691
MaeIII GTNAC 3 cut(s) 420, 561, 578
MbiI CCGCTC 1 cut(s) 58
MboII GAAGA 8 cut(s) 81, 258, 261, 534, 597, 600, 885, 1022
MflI RGATCY 3 cut(s) 387, 590, 773
MhlI GDGCHC 2 cut(s) 445, 1044
MlsI TGGCCA 1 cut(s) 900
MluCI AATT 5 cut(s) 22, 176, 310, 397, 1063
MluNI TGGCCA 1 cut(s) 900
MlyI GAGTC 2 cut(s) 156, 428
MmeI TCCRAC 1 cut(s) 850
Mox20I TGGCCA 1 cut(s) 900
Mph1103I ATGCAT 1 cut(s) 1092
MroXI GAANNNNTTC 1 cut(s) 268
MscI TGGCCA 1 cut(s) 900
MslI CAYNNNNRTG 3 cut(s) 122, 234, 837
Msp20I TGGCCA 1 cut(s) 900
MspI CCGG 2 cut(s) 661, 950
MspR9I CCNGG 4 cut(s) 252, 331, 651, 950
Mva1269I GAATGC 1 cut(s) 113
MvaI CCWGG 3 cut(s) 252, 331, 651
MwoI GCNNNNNNNGC 7 cut(s) 110, 149, 440, 449, 843, 852, 1056
NciI CCSGG 1 cut(s) 950
NdeI CATATG 1 cut(s) 364
NlaIII CATG 8 cut(s) 127, 233, 463, 836, 905, 965, 1090, 1094
NlaIV GGNNCC 2 cut(s) 389, 967
NmuCI GTSAC 3 cut(s) 420, 561, 578
NsiI ATGCAT 1 cut(s) 1092
PagI TCATGA 1 cut(s) 229
PcsI WCGNNNNNNNCGW 1 cut(s) 805
PctI GAATGC 1 cut(s) 113
PdmI GAANNNNTTC 1 cut(s) 268
PkrI GCNGC 5 cut(s) 60, 749, 848, 851, 854
Ple19I CGATCG 1 cut(s) 169
PleI GAGTC 2 cut(s) 156, 427
PpsI GAGTC 2 cut(s) 156, 427
PsiI TTATAA 2 cut(s) 308, 930
Psp6I CCWGG 3 cut(s) 250, 329, 649
PspFI CCCAGC 1 cut(s) 968
PspGI CCWGG 3 cut(s) 250, 329, 649
PspN4I GGNNCC 2 cut(s) 389, 967
PspPI GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
PsuI RGATCY 3 cut(s) 387, 590, 773
PvuI CGATCG 1 cut(s) 169
RseI CAYNNNNRTG 3 cut(s) 122, 234, 837
SatI GCNGC 5 cut(s) 59, 748, 847, 850, 853
Sau96I GGNCC 8 cut(s) 6, 333, 475, 641, 653, 965, 996, 1073
SchI GAGTC 2 cut(s) 156, 428
ScrFI CCNGG 4 cut(s) 252, 331, 651, 950
SduI GDGCHC 2 cut(s) 445, 1044
SexAI ACCWGGT 1 cut(s) 250
SfaNI GCATC 3 cut(s) 25, 130, 421
SfcI CTRYAG 1 cut(s) 532
SinI GGWCC 4 cut(s) 333, 475, 653, 965
SmiMI CAYNNNNRTG 3 cut(s) 122, 234, 837
Sse9I AATT 5 cut(s) 22, 176, 310, 397, 1063
SsiI CCGC 2 cut(s) 58, 850
SspMI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
StyD4I CCNGG 4 cut(s) 250, 329, 649, 948
StyI CCWWGG 1 cut(s) 336
TaiI ACGT 1 cut(s) 694
TaqI TCGA 3 cut(s) 40, 165, 184
TaqII GACCGA 1 cut(s) 492
TasI AATT 5 cut(s) 22, 176, 310, 397, 1063
TauI GCSGC 2 cut(s) 61, 852
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 3 cut(s) 420, 561, 578
TseI GCWGC 3 cut(s) 747, 846, 852
Tsp45I GTSAC 3 cut(s) 420, 561, 578
TspDTI ATGAA 4 cut(s) 106, 113, 531, 999
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 4 cut(s) 333, 475, 653, 965
XagI CCTNNNNNAGG 1 cut(s) 984
XapI RAATTY 4 cut(s) 22, 176, 310, 397
XbaI TCTAGA 1 cut(s) 242
XmnI GAANNNNTTC 1 cut(s) 268
XspI CTAG 6 cut(s) 243, 438, 566, 645, 915, 939
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.