RchiOBHm_Chr2g0101351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003967
Physical Location & Seq
Forward (+)
12979225 .. 12983502
4278 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47595

Sequence Viewer

Length: 381 bp
ATGGCCATCAGAGGCGTCGATTTCAAGTGCTGGAATGGGTTTAAGGTGGACTTTGGCAATGGTGTGCCTGAGAAAACTTCAGTGGAACCTAAAGTATCTGAGGAAGGGCTTCTTGATGCTATTCAGCAGGATTACTTCCCATCTGCTTCCATAGAGAGTTTTGAATTACCTCTTTCCGAATCAAAAAGGGTTAGGTCTGAAGGAAAGCTACTAGTCATCATTGATGATTATATAGGCTGCAGTAAGTATTTTGATTCTGGTAAAGTTGATGTTAAGATTTTTCAAGAGTTTCAGGTCCTTGAGATGATGGAATCTGGAAATAAAGAGTCACAAAAGAAAAATTCACTGGAAGAGTTTGATTCTGAGCATGTGTTGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.32

Weight (kDa)

4.7

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 340
AcuI CTGAAG 2 cut(s) 63, 219
AcyI GRCGYC 1 cut(s) 15
AgsI TTSAA 3 cut(s) 25, 164, 284
AhlI ACTAGT 1 cut(s) 211
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 237
ApoI RAATTY 1 cut(s) 340
Asp700I GAANNNNTTC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 295
AvaII GGWCC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 5
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbvI GCAGC 1 cut(s) 224
BccI CCATC 3 cut(s) 14, 148, 301
BcuI ACTAGT 1 cut(s) 211
BfaI CTAG 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 238
BisI GCNGC 1 cut(s) 238
BlsI GCNGC 1 cut(s) 239
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 1 cut(s) 295
BmiI GGNNCC 1 cut(s) 87
BmsI GCATC 1 cut(s) 106
BpuEI CTTGAG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 15
Bse1I ACTGG 1 cut(s) 351
Bse3DI GCAATG 1 cut(s) 64
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 3 cut(s) 60, 90, 354
BseNI ACTGG 1 cut(s) 351
BseXI GCAGC 1 cut(s) 224
BshFI GGCC 1 cut(s) 5
BsnI GGCC 1 cut(s) 5
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 61, 91, 355
BspLI GGNNCC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 1 cut(s) 351
BssNI GRCGYC 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 345
BstACI GRCGYC 1 cut(s) 15
BstDEI CTNAG 3 cut(s) 69, 99, 363
BstNSI RCATGY 1 cut(s) 371
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 224
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 87, 344
Cfr13I GGNCC 1 cut(s) 295
CseI GACGC 1 cut(s) 4
CviAII CATG 1 cut(s) 368
CviJI RGCY 4 cut(s) 5, 109, 208, 237
CviKI_1 RGCY 4 cut(s) 5, 109, 208, 237
DdeI CTNAG 3 cut(s) 69, 99, 363
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 345
EarI CTCTTC 1 cut(s) 345
Eco47I GGWCC 1 cut(s) 295
Eco57I CTGAAG 2 cut(s) 63, 219
EcoO109I RGGNCCY 1 cut(s) 295
FaeI CATG 1 cut(s) 371
FaiI YATR 4 cut(s) 152, 231, 233, 369
FalI AAGNNNNNCTT 4 cut(s) 35, 67, 96, 128
FatI CATG 1 cut(s) 367
Fnu4HI GCNGC 1 cut(s) 238
Fsp4HI GCNGC 1 cut(s) 238
FspBI CTAG 1 cut(s) 212
GluI GCNGC 1 cut(s) 238
HaeIII GGCC 1 cut(s) 5
HgaI GACGC 1 cut(s) 4
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 1 cut(s) 371
HinfI GANTC 5 cut(s) 179, 254, 311, 326, 359
Hpy166II GTNNAC 1 cut(s) 49
Hpy188I TCNGA 5 cut(s) 11, 100, 178, 199, 364
Hpy188III TCNNGA 3 cut(s) 113, 284, 315
Hpy8I GTNNAC 1 cut(s) 49
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 2 cut(s) 98, 194
HpyCH4V TGCA 1 cut(s) 240
HpyF3I CTNAG 3 cut(s) 69, 99, 363
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 1 cut(s) 371
LpnPI CCDG 7 cut(s) 16, 81, 113, 243, 278, 300, 332
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 327
MboII GAAGA 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 164, 340
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 4 cut(s) 5, 94, 180, 369
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 108
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 42, 273
Msp20I TGGCCA 1 cut(s) 5
NlaIII CATG 1 cut(s) 371
NlaIV GGNNCC 1 cut(s) 87
NmuCI GTSAC 1 cut(s) 327
NspI RCATGY 1 cut(s) 371
PdmI GAANNNNTTC 1 cut(s) 108
PfeI GAWTC 4 cut(s) 179, 254, 311, 359
PkrI GCNGC 1 cut(s) 239
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 295
Psp5II RGGWCCY 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 87
PspPI GGNCC 1 cut(s) 295
PspPPI RGGWCCY 1 cut(s) 295
PstI CTGCAG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 42, 273
SatI GCNGC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 295
SchI GAGTC 1 cut(s) 335
SetI ASST 7 cut(s) 48, 91, 172, 197, 210, 297, 380
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 295
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SpeI ACTAGT 1 cut(s) 211
Sse9I AATT 2 cut(s) 164, 340
SspMI CTAG 1 cut(s) 212
TaqI TCGA 1 cut(s) 18
TasI AATT 2 cut(s) 164, 340
TfiI GAWTC 4 cut(s) 179, 254, 311, 359
Tru1I TTAA 2 cut(s) 42, 273
Tru9I TTAA 2 cut(s) 42, 273
TscAI CASTG 2 cut(s) 87, 351
TseFI GTSAC 1 cut(s) 327
TseI GCWGC 1 cut(s) 237
Tsp45I GTSAC 1 cut(s) 327
TspRI CASTG 2 cut(s) 87, 351
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 340
XceI RCATGY 1 cut(s) 371
XmnI GAANNNNTTC 1 cut(s) 108
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.