Rh5BG284100

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
36139750 .. 36141178
1429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG284100.1

Sequence Viewer

Length: 1374 bp
ATGCGTACCCCACTTGTTTACCATTCTACTCCTTCAATTCCAACCTTTCAGTCACCTTCAGTCTCCACCTTTGTGCCCCAACTCCAATTTACTGATCCAAAACCTCTTCCTTTCTATAGCAAGCCGTTTCGGGGTTTCAGATGTAGAGTCGTCATGGGTGCAAAAGCAAGAGTTGCCAAAAAGACCCGAAACCCAGATCTGCTCCGTGATATGGGTAAGTATTCGAGGTCCAAGAGGTACCACAGGTGCGGTCTCTGGGTCATCAAGGCCAGAAACGACGATGTATTCCCACGCCACAATGCCAAGGCGGCAGTTGCAATTATGGAGGAGCTTCATCAACTACTTGTGGGTCAAAAAACTCATATTACTGAGCCGGCCTTGAGGCCATTGAAGTTTGGGTCACTACCAGCTCCTATGGTTGCTGCGTCTCTTACGGCGTCGGGGAAGACATCGTCCTCAGCTACGGCTATAGCTGGAGGTAGTATTCGAATCTCAGAACCAAATTTTAATATATCACCTCATGAAGCAATATTGGATTTGAGTAATGATATTTCTGTTGTGGTATCTGGAAGTAGTAGTGGGGATAATATTGTTGTTGGTATGATTGAAAAACTTGTGTTGAATGTTGATAAAAATATTGTTGGAGGTGTTACTGAGAAATTGAATATTGTGAGTAACAGCATGGGTGCTAGTACGGAAAATAGGGAGTCTGAGATTCGAAGTACTGAAGGGGCAATTGTTACAGTAAAATCAATTGGGAAGCTGCGAGATGGTAAGGAATTTTTTAAGAAAGGTCATGGTGAAGGAGAAGCACCGTTTGAGTTCAAGAAAGACGCGGATCAAGTGATTGAGGAGCTCGATAAAGCTGTAGTGACAATGAGCAAGGTTTTAGATGAAGCAAGTCTTCCTTCTAACTTCATAGATACTATAATGGATGGCGTTCTTTACTCAATAGAGGCTGTTACATGCATCCCACAGTGTCTATATGCCATGTGCTTAAATAATAATTGTTTTCAGGCTATGAAAGATCGCAATGCTTTGAGGTGCTTTGTGAAGTGTACTTCAGGAACCTATTTGCGTGCTCTAACAAGTGATAAATCGATCTCCTTCTCTAGTGGATTGGGTGAATTATTGCGTCATGCTTCCTCATTACATGGTCCTCATCTGGATATGCTAATTGAGATTTTAAAGGCCATCTCAAATATTCAACACAGGGTTGATGCTTCTCTCACGTCAACTGAACTTTTGTCTTCTTTTATTCCTGTTATTATGAAAACTGATGGAGGAGAGAGGAATTTAGTCATGACAGATGATAGGAAGTCGTTCAAATGGATAGTTTGGAGCAGGGAACTGAACCATCTTCTGATTCTTTAG

Protein Analysis

457

Amino Acids

50.27

Weight (kDa)

9.04

Isoelectric Point (pI)

43.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L6e_N PF03868 55 - 102 3.4e-06 Ribosomal protein L6, N-terminal domain
DUF913 PF06025 292 - 407 1e-20 Domain of Unknown Function (DUF913)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AccII CGCG 1 cut(s) 836
AciI CCGC 3 cut(s) 249, 308, 836
AclWI GGATC 2 cut(s) 89, 846
AcsI RAATTY 3 cut(s) 502, 779, 1294
AcuI CTGAAG 3 cut(s) 42, 747, 1047
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 5 cut(s) 7, 239, 694, 724, 1060
AfiI CCNNNNNNNGG 2 cut(s) 131, 211
AgsI TTSAA 8 cut(s) 36, 391, 608, 622, 664, 826, 1208, 1327
AjiI CACGTC 1 cut(s) 1233
AleI CACNNNNGTG 1 cut(s) 71
AluBI AGCT 7 cut(s) 331, 410, 461, 473, 763, 856, 866
AluI AGCT 7 cut(s) 331, 410, 461, 473, 763, 856, 866
Alw21I GWGCWC 2 cut(s) 858, 1084
Alw26I GTCTC 3 cut(s) 67, 257, 432
AlwI GGATC 2 cut(s) 89, 846
AoxI GGCC 4 cut(s) 267, 375, 383, 1191
ApeKI GCWGC 2 cut(s) 422, 763
ApoI RAATTY 3 cut(s) 502, 779, 1294
Asp700I GAANNNNTTC 1 cut(s) 1322
Asp718I GGTACC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 228, 1157
AsuHPI GGTGA 4 cut(s) 45, 507, 812, 1136
AsuII TTCGAA 2 cut(s) 487, 718
AvaII GGWCC 2 cut(s) 228, 1157
BaeGI GKGCMC 1 cut(s) 78
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 858
BbsI GAAGAC 3 cut(s) 452, 896, 1242
Bbv12I GWGCWC 2 cut(s) 858, 1084
BbvCI CCTCAGC 1 cut(s) 457
BbvI GCAGC 2 cut(s) 409, 750
BccI CCATC 5 cut(s) 764, 929, 1202, 1274, 1365
BceAI ACGGC 3 cut(s) 109, 450, 480
BcoDI GTCTC 3 cut(s) 67, 257, 432
BfaI CTAG 2 cut(s) 690, 1113
BfmI CTRYAG 3 cut(s) 115, 468, 867
BglI GCCNNNNNGGC 1 cut(s) 308
BglII AGATCT 1 cut(s) 196
BisI GCNGC 3 cut(s) 309, 423, 764
BlsI GCNGC 3 cut(s) 310, 424, 765
BmcAI AGTACT 1 cut(s) 724
Bme18I GGWCC 2 cut(s) 228, 1157
BmgBI CACGTC 1 cut(s) 1233
BmgT120I GGNCC 2 cut(s) 228, 1157
BmiI GGNNCC 2 cut(s) 239, 1069
BmsI GCATC 2 cut(s) 978, 1210
BpiI GAAGAC 3 cut(s) 452, 896, 1242
BpmI CTGGAG 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 457
Bpu14I TTCGAA 2 cut(s) 487, 718
BpuEI CTTGAG 1 cut(s) 400
Bsa29I ATCGAT 1 cut(s) 1100
BsaHI GRCGYC 1 cut(s) 437
BsaI GGTCTC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 2 cut(s) 131, 211
Bse118I RCCGGY 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 1039
BseCI ATCGAT 1 cut(s) 1100
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 2 cut(s) 940, 969
BseLI CCNNNNNNNGG 2 cut(s) 131, 211
BseMI GCAATG 1 cut(s) 1039
BseMII CTCAG 5 cut(s) 360, 471, 507, 645, 702
BseRI GAGGAG 3 cut(s) 341, 866, 1299
BseSI GKGCMC 1 cut(s) 78
BseXI GCAGC 2 cut(s) 409, 750
Bsh1236I CGCG 1 cut(s) 836
BshFI GGCC 4 cut(s) 269, 377, 385, 1193
BshNI GGYRCC 1 cut(s) 237
BshVI ATCGAT 1 cut(s) 1100
BsiHKAI GWGCWC 2 cut(s) 858, 1084
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 131, 211
BsmAI GTCTC 3 cut(s) 67, 257, 432
BsmBI CGTCTC 1 cut(s) 432
BsnI GGCC 4 cut(s) 269, 377, 385, 1193
Bso31I GGTCTC 1 cut(s) 257
Bsp119I TTCGAA 2 cut(s) 487, 718
Bsp1286I GDGCHC 3 cut(s) 78, 858, 1084
Bsp143I GATC 5 cut(s) 94, 196, 838, 1027, 1101
BspACI CCGC 3 cut(s) 249, 308, 836
BspANI GGCC 4 cut(s) 269, 377, 385, 1193
BspCNI CTCAG 5 cut(s) 361, 470, 506, 646, 703
BspDI ATCGAT 1 cut(s) 1100
BspFNI CGCG 1 cut(s) 836
BspHI TCATGA 2 cut(s) 520, 1302
BspLI GGNNCC 2 cut(s) 239, 1069
BspPI GGATC 2 cut(s) 89, 846
BspT104I TTCGAA 2 cut(s) 487, 718
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 1039
BsrFI RCCGGY 1 cut(s) 373
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 5 cut(s) 94, 196, 838, 1027, 1101
BssNI GRCGYC 1 cut(s) 437
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 745, 816, 978
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 437
BstAPI GCANNNNNTGC 1 cut(s) 173
BstBI TTCGAA 2 cut(s) 487, 718
BstC8I GCNNGC 3 cut(s) 122, 375, 1080
BstDEI CTNAG 5 cut(s) 369, 457, 493, 654, 711
BstF5I GGATG 2 cut(s) 940, 969
BstFNI CGCG 1 cut(s) 836
BstKTI GATC 5 cut(s) 97, 199, 841, 1030, 1104
BstMAI GTCTC 3 cut(s) 67, 257, 432
BstMBI GATC 5 cut(s) 94, 196, 838, 1027, 1101
BstMWI GCNNNNNNNGC 3 cut(s) 173, 308, 314
BstNSI RCATGY 1 cut(s) 969
BstSFI CTRYAG 3 cut(s) 115, 468, 867
BstSLI GKGCMC 1 cut(s) 78
BstUI CGCG 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 409, 750
BstV2I GAAGAC 3 cut(s) 452, 896, 1242
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
Bsu15I ATCGAT 1 cut(s) 1100
BsuRI GGCC 4 cut(s) 269, 377, 385, 1193
BsuTUI ATCGAT 1 cut(s) 1100
BtrI CACGTC 1 cut(s) 1233
BtsCI GGATG 2 cut(s) 940, 969
BtsIMutI CAGTG 1 cut(s) 983
Cac8I GCNNGC 3 cut(s) 122, 375, 1080
CciI TCATGA 2 cut(s) 520, 1302
Cfr10I RCCGGY 1 cut(s) 373
Cfr13I GGNCC 2 cut(s) 228, 1157
ClaI ATCGAT 1 cut(s) 1100
CseI GACGC 4 cut(s) 414, 426, 842, 1124
Csp6I GTAC 5 cut(s) 6, 238, 693, 723, 1059
CviAII CATG 9 cut(s) 154, 521, 682, 797, 966, 991, 1139, 1154, 1303
CviQI GTAC 5 cut(s) 6, 238, 693, 723, 1059
DdeI CTNAG 5 cut(s) 369, 457, 493, 654, 711
DpnI GATC 5 cut(s) 96, 198, 840, 1029, 1103
DpnII GATC 5 cut(s) 94, 196, 838, 1027, 1101
DraI TTTAAA 1 cut(s) 1188
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Ecl136II GAGCTC 1 cut(s) 856
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 858
Eco31I GGTCTC 1 cut(s) 257
Eco47I GGWCC 2 cut(s) 228, 1157
Eco53kI GAGCTC 1 cut(s) 856
Eco57I CTGAAG 3 cut(s) 42, 747, 1047
EcoICRI GAGCTC 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 971
EcoT38I GRGCYC 1 cut(s) 858
ErhI CCWWGG 1 cut(s) 303
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 9 cut(s) 157, 524, 685, 800, 969, 994, 1142, 1157, 1306
FalI AAGNNNNNCTT 4 cut(s) 888, 920, 892, 924
FatI CATG 9 cut(s) 153, 520, 681, 796, 965, 990, 1138, 1153, 1302
Fnu4HI GCNGC 3 cut(s) 309, 423, 764
FokI GGATG 2 cut(s) 947, 956
FriOI GRGCYC 1 cut(s) 858
Fsp4HI GCNGC 3 cut(s) 309, 423, 764
FspBI CTAG 2 cut(s) 690, 1113
GluI GCNGC 3 cut(s) 309, 423, 764
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 4 cut(s) 269, 377, 385, 1193
HapII CCGG 1 cut(s) 374
HgaI GACGC 4 cut(s) 414, 426, 842, 1124
Hin1I GRCGYC 1 cut(s) 437
Hin1II CATG 9 cut(s) 157, 524, 685, 800, 969, 994, 1142, 1157, 1306
HincII GTYRAC 1 cut(s) 1236
HindII GTYRAC 1 cut(s) 1236
HinfI GANTC 5 cut(s) 147, 489, 707, 715, 1366
HpaII CCGG 1 cut(s) 374
HphI GGTGA 4 cut(s) 45, 507, 812, 1136
Hpy166II GTNNAC 3 cut(s) 19, 1059, 1236
Hpy188I TCNGA 4 cut(s) 140, 496, 712, 1365
Hpy188III TCNNGA 6 cut(s) 521, 567, 826, 1065, 1166, 1303
Hpy8I GTNNAC 3 cut(s) 19, 1059, 1236
Hpy99I CGWCG 2 cut(s) 281, 442
HpyAV CCTTC 6 cut(s) 42, 66, 722, 797, 918, 1117
HpyCH4III ACNGT 3 cut(s) 745, 816, 978
HpyCH4IV ACGT 1 cut(s) 1232
HpyCH4V TGCA 3 cut(s) 161, 317, 969
HpyF10VI GCNNNNNNNGC 3 cut(s) 173, 308, 314
HpyF3I CTNAG 5 cut(s) 369, 457, 493, 654, 711
HpySE526I ACGT 1 cut(s) 1232
Hsp92I GRCGYC 1 cut(s) 437
Hsp92II CATG 9 cut(s) 157, 524, 685, 800, 969, 994, 1142, 1157, 1306
KpnI GGTACC 1 cut(s) 241
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
Kzo9I GATC 5 cut(s) 94, 196, 838, 1027, 1101
LmnI GCTCC 5 cut(s) 207, 328, 415, 853, 1341
Lsp1109I GCAGC 2 cut(s) 409, 750
LweI GCATC 2 cut(s) 978, 1210
MaeI CTAG 2 cut(s) 690, 1113
MaeII ACGT 1 cut(s) 1232
MaeIII GTNAC 7 cut(s) 51, 399, 649, 674, 739, 871, 961
MalI GATC 5 cut(s) 96, 198, 840, 1029, 1103
MboI GATC 5 cut(s) 94, 196, 838, 1027, 1101
MboII GAAGA 5 cut(s) 98, 457, 896, 1242, 1352
MfeI CAATTG 2 cut(s) 735, 753
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 3 cut(s) 78, 858, 1084
MlyI GAGTC 2 cut(s) 156, 716
MmeI TCCRAC 2 cut(s) 65, 622
Mph1103I ATGCAT 1 cut(s) 971
MroNI GCCGGC 1 cut(s) 373
MroXI GAANNNNTTC 1 cut(s) 1322
MseI TTAA 4 cut(s) 507, 786, 998, 1187
MslI CAYNNNNRTG 1 cut(s) 71
MspI CCGG 1 cut(s) 374
MunI CAATTG 2 cut(s) 735, 753
MvnI CGCG 1 cut(s) 836
MwoI GCNNNNNNNGC 3 cut(s) 173, 308, 314
NaeI GCCGGC 1 cut(s) 375
NdeII GATC 5 cut(s) 94, 196, 838, 1027, 1101
NgoMIV GCCGGC 1 cut(s) 373
NlaIII CATG 9 cut(s) 157, 524, 685, 800, 969, 994, 1142, 1157, 1306
NlaIV GGNNCC 2 cut(s) 239, 1069
NmuCI GTSAC 3 cut(s) 51, 399, 871
NsiI ATGCAT 1 cut(s) 971
NspI RCATGY 1 cut(s) 969
NspV TTCGAA 2 cut(s) 487, 718
OliI CACNNNNGTG 1 cut(s) 71
PagI TCATGA 2 cut(s) 520, 1302
PdiI GCCGGC 1 cut(s) 375
PdmI GAANNNNTTC 1 cut(s) 1322
PfeI GAWTC 3 cut(s) 489, 715, 1366
PflFI GACNNNGTC 1 cut(s) 451
PkrI GCNGC 3 cut(s) 310, 424, 765
PleI GAGTC 2 cut(s) 155, 715
PpsI GAGTC 2 cut(s) 155, 715
Psp124BI GAGCTC 1 cut(s) 858
PspN4I GGNNCC 2 cut(s) 239, 1069
PspPI GGNCC 2 cut(s) 228, 1157
PsuI RGATCY 1 cut(s) 196
PsyI GACNNNGTC 1 cut(s) 451
RsaI GTAC 5 cut(s) 7, 239, 694, 724, 1060
RsaNI GTAC 5 cut(s) 6, 238, 693, 723, 1059
RseI CAYNNNNRTG 1 cut(s) 71
SacI GAGCTC 1 cut(s) 858
SaqAI TTAA 4 cut(s) 507, 786, 998, 1187
SatI GCNGC 3 cut(s) 309, 423, 764
Sau3AI GATC 5 cut(s) 94, 196, 838, 1027, 1101
Sau96I GGNCC 2 cut(s) 228, 1157
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 2 cut(s) 156, 716
SduI GDGCHC 3 cut(s) 78, 858, 1084
SfaNI GCATC 2 cut(s) 978, 1210
SfcI CTRYAG 3 cut(s) 115, 468, 867
SfuI TTCGAA 2 cut(s) 487, 718
SinI GGWCC 2 cut(s) 228, 1157
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
SsiI CCGC 3 cut(s) 249, 308, 836
SspI AATATT 5 cut(s) 531, 589, 637, 667, 1204
SspMI CTAG 2 cut(s) 690, 1113
SstI GAGCTC 1 cut(s) 858
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 3 cut(s) 745, 816, 978
TaiI ACGT 1 cut(s) 1235
TaqI TCGA 5 cut(s) 224, 487, 718, 858, 1100
TatI WGTACW 2 cut(s) 722, 1058
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 3 cut(s) 489, 715, 1366
Tru1I TTAA 4 cut(s) 507, 786, 998, 1187
Tru9I TTAA 4 cut(s) 507, 786, 998, 1187
TscAI CASTG 1 cut(s) 983
TseFI GTSAC 3 cut(s) 51, 399, 871
TseI GCWGC 2 cut(s) 422, 763
Tsp45I GTSAC 3 cut(s) 51, 399, 871
TspDTI ATGAA 6 cut(s) 323, 537, 907, 909, 1037, 1286
TspGWI ACGGA 2 cut(s) 194, 710
TspRI CASTG 1 cut(s) 983
Tth111I GACNNNGTC 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 228, 1157
XapI RAATTY 3 cut(s) 502, 779, 1294
XceI RCATGY 1 cut(s) 969
XmnI GAANNNNTTC 1 cut(s) 1322
XspI CTAG 2 cut(s) 690, 1113
ZrmI AGTACT 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 971
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.