E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411 |
| rosa_laevigata | RLG00000004201 RLG00000004202 RLG00000022917 |
| rosa_multiflora | Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360 |
| rosa_rugosa | Rorug07G0015700 |
| rosa_samantha | Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800 |
| rosa_wichuraiana | Rw7G012230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 237 |
| AccB1I | GGYRCC | 1 cut(s) | 237 |
| AccII | CGCG | 1 cut(s) | 836 |
| AciI | CCGC | 3 cut(s) | 249, 308, 836 |
| AclWI | GGATC | 2 cut(s) | 89, 846 |
| AcsI | RAATTY | 3 cut(s) | 502, 779, 1294 |
| AcuI | CTGAAG | 3 cut(s) | 42, 747, 1047 |
| AcyI | GRCGYC | 1 cut(s) | 437 |
| AfaI | GTAC | 5 cut(s) | 7, 239, 694, 724, 1060 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 131, 211 |
| AgsI | TTSAA | 8 cut(s) | 36, 391, 608, 622, 664, 826, 1208, 1327 |
| AjiI | CACGTC | 1 cut(s) | 1233 |
| AleI | CACNNNNGTG | 1 cut(s) | 71 |
| AluBI | AGCT | 7 cut(s) | 331, 410, 461, 473, 763, 856, 866 |
| AluI | AGCT | 7 cut(s) | 331, 410, 461, 473, 763, 856, 866 |
| Alw21I | GWGCWC | 2 cut(s) | 858, 1084 |
| Alw26I | GTCTC | 3 cut(s) | 67, 257, 432 |
| AlwI | GGATC | 2 cut(s) | 89, 846 |
| AoxI | GGCC | 4 cut(s) | 267, 375, 383, 1191 |
| ApeKI | GCWGC | 2 cut(s) | 422, 763 |
| ApoI | RAATTY | 3 cut(s) | 502, 779, 1294 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1322 |
| Asp718I | GGTACC | 1 cut(s) | 237 |
| AspS9I | GGNCC | 2 cut(s) | 228, 1157 |
| AsuHPI | GGTGA | 4 cut(s) | 45, 507, 812, 1136 |
| AsuII | TTCGAA | 2 cut(s) | 487, 718 |
| AvaII | GGWCC | 2 cut(s) | 228, 1157 |
| BaeGI | GKGCMC | 1 cut(s) | 78 |
| BanI | GGYRCC | 1 cut(s) | 237 |
| BanII | GRGCYC | 1 cut(s) | 858 |
| BbsI | GAAGAC | 3 cut(s) | 452, 896, 1242 |
| Bbv12I | GWGCWC | 2 cut(s) | 858, 1084 |
| BbvCI | CCTCAGC | 1 cut(s) | 457 |
| BbvI | GCAGC | 2 cut(s) | 409, 750 |
| BccI | CCATC | 5 cut(s) | 764, 929, 1202, 1274, 1365 |
| BceAI | ACGGC | 3 cut(s) | 109, 450, 480 |
| BcoDI | GTCTC | 3 cut(s) | 67, 257, 432 |
| BfaI | CTAG | 2 cut(s) | 690, 1113 |
| BfmI | CTRYAG | 3 cut(s) | 115, 468, 867 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 308 |
| BglII | AGATCT | 1 cut(s) | 196 |
| BisI | GCNGC | 3 cut(s) | 309, 423, 764 |
| BlsI | GCNGC | 3 cut(s) | 310, 424, 765 |
| BmcAI | AGTACT | 1 cut(s) | 724 |
| Bme18I | GGWCC | 2 cut(s) | 228, 1157 |
| BmgBI | CACGTC | 1 cut(s) | 1233 |
| BmgT120I | GGNCC | 2 cut(s) | 228, 1157 |
| BmiI | GGNNCC | 2 cut(s) | 239, 1069 |
| BmsI | GCATC | 2 cut(s) | 978, 1210 |
| BpiI | GAAGAC | 3 cut(s) | 452, 896, 1242 |
| BpmI | CTGGAG | 1 cut(s) | 495 |
| Bpu10I | CCTNAGC | 1 cut(s) | 457 |
| Bpu14I | TTCGAA | 2 cut(s) | 487, 718 |
| BpuEI | CTTGAG | 1 cut(s) | 400 |
| Bsa29I | ATCGAT | 1 cut(s) | 1100 |
| BsaHI | GRCGYC | 1 cut(s) | 437 |
| BsaI | GGTCTC | 1 cut(s) | 257 |
| BsaJI | CCNNGG | 1 cut(s) | 303 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 131, 211 |
| Bse118I | RCCGGY | 1 cut(s) | 373 |
| Bse3DI | GCAATG | 1 cut(s) | 1039 |
| BseCI | ATCGAT | 1 cut(s) | 1100 |
| BseDI | CCNNGG | 1 cut(s) | 303 |
| BseGI | GGATG | 2 cut(s) | 940, 969 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 131, 211 |
| BseMI | GCAATG | 1 cut(s) | 1039 |
| BseMII | CTCAG | 5 cut(s) | 360, 471, 507, 645, 702 |
| BseRI | GAGGAG | 3 cut(s) | 341, 866, 1299 |
| BseSI | GKGCMC | 1 cut(s) | 78 |
| BseXI | GCAGC | 2 cut(s) | 409, 750 |
| Bsh1236I | CGCG | 1 cut(s) | 836 |
| BshFI | GGCC | 4 cut(s) | 269, 377, 385, 1193 |
| BshNI | GGYRCC | 1 cut(s) | 237 |
| BshVI | ATCGAT | 1 cut(s) | 1100 |
| BsiHKAI | GWGCWC | 2 cut(s) | 858, 1084 |
| BsiSI | CCGG | 1 cut(s) | 374 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 131, 211 |
| BsmAI | GTCTC | 3 cut(s) | 67, 257, 432 |
| BsmBI | CGTCTC | 1 cut(s) | 432 |
| BsnI | GGCC | 4 cut(s) | 269, 377, 385, 1193 |
| Bso31I | GGTCTC | 1 cut(s) | 257 |
| Bsp119I | TTCGAA | 2 cut(s) | 487, 718 |
| Bsp1286I | GDGCHC | 3 cut(s) | 78, 858, 1084 |
| Bsp143I | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| BspACI | CCGC | 3 cut(s) | 249, 308, 836 |
| BspANI | GGCC | 4 cut(s) | 269, 377, 385, 1193 |
| BspCNI | CTCAG | 5 cut(s) | 361, 470, 506, 646, 703 |
| BspDI | ATCGAT | 1 cut(s) | 1100 |
| BspFNI | CGCG | 1 cut(s) | 836 |
| BspHI | TCATGA | 2 cut(s) | 520, 1302 |
| BspLI | GGNNCC | 2 cut(s) | 239, 1069 |
| BspPI | GGATC | 2 cut(s) | 89, 846 |
| BspT104I | TTCGAA | 2 cut(s) | 487, 718 |
| BspT107I | GGYRCC | 1 cut(s) | 237 |
| BspTNI | GGTCTC | 1 cut(s) | 257 |
| BsrDI | GCAATG | 1 cut(s) | 1039 |
| BsrFI | RCCGGY | 1 cut(s) | 373 |
| BssAI | RCCGGY | 1 cut(s) | 373 |
| BssECI | CCNNGG | 1 cut(s) | 303 |
| BssMI | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| BssNI | GRCGYC | 1 cut(s) | 437 |
| BssT1I | CCWWGG | 1 cut(s) | 303 |
| Bst4CI | ACNGT | 3 cut(s) | 745, 816, 978 |
| Bst6I | CTCTTC | 1 cut(s) | 111 |
| BstACI | GRCGYC | 1 cut(s) | 437 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 173 |
| BstBI | TTCGAA | 2 cut(s) | 487, 718 |
| BstC8I | GCNNGC | 3 cut(s) | 122, 375, 1080 |
| BstDEI | CTNAG | 5 cut(s) | 369, 457, 493, 654, 711 |
| BstF5I | GGATG | 2 cut(s) | 940, 969 |
| BstFNI | CGCG | 1 cut(s) | 836 |
| BstKTI | GATC | 5 cut(s) | 97, 199, 841, 1030, 1104 |
| BstMAI | GTCTC | 3 cut(s) | 67, 257, 432 |
| BstMBI | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 173, 308, 314 |
| BstNSI | RCATGY | 1 cut(s) | 969 |
| BstSFI | CTRYAG | 3 cut(s) | 115, 468, 867 |
| BstSLI | GKGCMC | 1 cut(s) | 78 |
| BstUI | CGCG | 1 cut(s) | 836 |
| BstV1I | GCAGC | 2 cut(s) | 409, 750 |
| BstV2I | GAAGAC | 3 cut(s) | 452, 896, 1242 |
| BstX2I | RGATCY | 1 cut(s) | 196 |
| BstYI | RGATCY | 1 cut(s) | 196 |
| Bsu15I | ATCGAT | 1 cut(s) | 1100 |
| BsuRI | GGCC | 4 cut(s) | 269, 377, 385, 1193 |
| BsuTUI | ATCGAT | 1 cut(s) | 1100 |
| BtrI | CACGTC | 1 cut(s) | 1233 |
| BtsCI | GGATG | 2 cut(s) | 940, 969 |
| BtsIMutI | CAGTG | 1 cut(s) | 983 |
| Cac8I | GCNNGC | 3 cut(s) | 122, 375, 1080 |
| CciI | TCATGA | 2 cut(s) | 520, 1302 |
| Cfr10I | RCCGGY | 1 cut(s) | 373 |
| Cfr13I | GGNCC | 2 cut(s) | 228, 1157 |
| ClaI | ATCGAT | 1 cut(s) | 1100 |
| CseI | GACGC | 4 cut(s) | 414, 426, 842, 1124 |
| Csp6I | GTAC | 5 cut(s) | 6, 238, 693, 723, 1059 |
| CviAII | CATG | 9 cut(s) | 154, 521, 682, 797, 966, 991, 1139, 1154, 1303 |
| CviQI | GTAC | 5 cut(s) | 6, 238, 693, 723, 1059 |
| DdeI | CTNAG | 5 cut(s) | 369, 457, 493, 654, 711 |
| DpnI | GATC | 5 cut(s) | 96, 198, 840, 1029, 1103 |
| DpnII | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| DraI | TTTAAA | 1 cut(s) | 1188 |
| Eam1104I | CTCTTC | 1 cut(s) | 111 |
| EarI | CTCTTC | 1 cut(s) | 111 |
| Ecl136II | GAGCTC | 1 cut(s) | 856 |
| Eco130I | CCWWGG | 1 cut(s) | 303 |
| Eco24I | GRGCYC | 1 cut(s) | 858 |
| Eco31I | GGTCTC | 1 cut(s) | 257 |
| Eco47I | GGWCC | 2 cut(s) | 228, 1157 |
| Eco53kI | GAGCTC | 1 cut(s) | 856 |
| Eco57I | CTGAAG | 3 cut(s) | 42, 747, 1047 |
| EcoICRI | GAGCTC | 1 cut(s) | 856 |
| EcoT14I | CCWWGG | 1 cut(s) | 303 |
| EcoT22I | ATGCAT | 1 cut(s) | 971 |
| EcoT38I | GRGCYC | 1 cut(s) | 858 |
| ErhI | CCWWGG | 1 cut(s) | 303 |
| Esp3I | CGTCTC | 1 cut(s) | 432 |
| FaeI | CATG | 9 cut(s) | 157, 524, 685, 800, 969, 994, 1142, 1157, 1306 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 888, 920, 892, 924 |
| FatI | CATG | 9 cut(s) | 153, 520, 681, 796, 965, 990, 1138, 1153, 1302 |
| Fnu4HI | GCNGC | 3 cut(s) | 309, 423, 764 |
| FokI | GGATG | 2 cut(s) | 947, 956 |
| FriOI | GRGCYC | 1 cut(s) | 858 |
| Fsp4HI | GCNGC | 3 cut(s) | 309, 423, 764 |
| FspBI | CTAG | 2 cut(s) | 690, 1113 |
| GluI | GCNGC | 3 cut(s) | 309, 423, 764 |
| GsuI | CTGGAG | 1 cut(s) | 495 |
| HaeIII | GGCC | 4 cut(s) | 269, 377, 385, 1193 |
| HapII | CCGG | 1 cut(s) | 374 |
| HgaI | GACGC | 4 cut(s) | 414, 426, 842, 1124 |
| Hin1I | GRCGYC | 1 cut(s) | 437 |
| Hin1II | CATG | 9 cut(s) | 157, 524, 685, 800, 969, 994, 1142, 1157, 1306 |
| HincII | GTYRAC | 1 cut(s) | 1236 |
| HindII | GTYRAC | 1 cut(s) | 1236 |
| HinfI | GANTC | 5 cut(s) | 147, 489, 707, 715, 1366 |
| HpaII | CCGG | 1 cut(s) | 374 |
| HphI | GGTGA | 4 cut(s) | 45, 507, 812, 1136 |
| Hpy166II | GTNNAC | 3 cut(s) | 19, 1059, 1236 |
| Hpy188I | TCNGA | 4 cut(s) | 140, 496, 712, 1365 |
| Hpy188III | TCNNGA | 6 cut(s) | 521, 567, 826, 1065, 1166, 1303 |
| Hpy8I | GTNNAC | 3 cut(s) | 19, 1059, 1236 |
| Hpy99I | CGWCG | 2 cut(s) | 281, 442 |
| HpyAV | CCTTC | 6 cut(s) | 42, 66, 722, 797, 918, 1117 |
| HpyCH4III | ACNGT | 3 cut(s) | 745, 816, 978 |
| HpyCH4IV | ACGT | 1 cut(s) | 1232 |
| HpyCH4V | TGCA | 3 cut(s) | 161, 317, 969 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 173, 308, 314 |
| HpyF3I | CTNAG | 5 cut(s) | 369, 457, 493, 654, 711 |
| HpySE526I | ACGT | 1 cut(s) | 1232 |
| Hsp92I | GRCGYC | 1 cut(s) | 437 |
| Hsp92II | CATG | 9 cut(s) | 157, 524, 685, 800, 969, 994, 1142, 1157, 1306 |
| KpnI | GGTACC | 1 cut(s) | 241 |
| KroI | GCCGGC | 1 cut(s) | 373 |
| KroNI | GCCGGC | 1 cut(s) | 375 |
| Kzo9I | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| LmnI | GCTCC | 5 cut(s) | 207, 328, 415, 853, 1341 |
| Lsp1109I | GCAGC | 2 cut(s) | 409, 750 |
| LweI | GCATC | 2 cut(s) | 978, 1210 |
| MaeI | CTAG | 2 cut(s) | 690, 1113 |
| MaeII | ACGT | 1 cut(s) | 1232 |
| MaeIII | GTNAC | 7 cut(s) | 51, 399, 649, 674, 739, 871, 961 |
| MalI | GATC | 5 cut(s) | 96, 198, 840, 1029, 1103 |
| MboI | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| MboII | GAAGA | 5 cut(s) | 98, 457, 896, 1242, 1352 |
| MfeI | CAATTG | 2 cut(s) | 735, 753 |
| MflI | RGATCY | 1 cut(s) | 196 |
| MhlI | GDGCHC | 3 cut(s) | 78, 858, 1084 |
| MlyI | GAGTC | 2 cut(s) | 156, 716 |
| MmeI | TCCRAC | 2 cut(s) | 65, 622 |
| Mph1103I | ATGCAT | 1 cut(s) | 971 |
| MroNI | GCCGGC | 1 cut(s) | 373 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1322 |
| MseI | TTAA | 4 cut(s) | 507, 786, 998, 1187 |
| MslI | CAYNNNNRTG | 1 cut(s) | 71 |
| MspI | CCGG | 1 cut(s) | 374 |
| MunI | CAATTG | 2 cut(s) | 735, 753 |
| MvnI | CGCG | 1 cut(s) | 836 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 173, 308, 314 |
| NaeI | GCCGGC | 1 cut(s) | 375 |
| NdeII | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| NgoMIV | GCCGGC | 1 cut(s) | 373 |
| NlaIII | CATG | 9 cut(s) | 157, 524, 685, 800, 969, 994, 1142, 1157, 1306 |
| NlaIV | GGNNCC | 2 cut(s) | 239, 1069 |
| NmuCI | GTSAC | 3 cut(s) | 51, 399, 871 |
| NsiI | ATGCAT | 1 cut(s) | 971 |
| NspI | RCATGY | 1 cut(s) | 969 |
| NspV | TTCGAA | 2 cut(s) | 487, 718 |
| OliI | CACNNNNGTG | 1 cut(s) | 71 |
| PagI | TCATGA | 2 cut(s) | 520, 1302 |
| PdiI | GCCGGC | 1 cut(s) | 375 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1322 |
| PfeI | GAWTC | 3 cut(s) | 489, 715, 1366 |
| PflFI | GACNNNGTC | 1 cut(s) | 451 |
| PkrI | GCNGC | 3 cut(s) | 310, 424, 765 |
| PleI | GAGTC | 2 cut(s) | 155, 715 |
| PpsI | GAGTC | 2 cut(s) | 155, 715 |
| Psp124BI | GAGCTC | 1 cut(s) | 858 |
| PspN4I | GGNNCC | 2 cut(s) | 239, 1069 |
| PspPI | GGNCC | 2 cut(s) | 228, 1157 |
| PsuI | RGATCY | 1 cut(s) | 196 |
| PsyI | GACNNNGTC | 1 cut(s) | 451 |
| RsaI | GTAC | 5 cut(s) | 7, 239, 694, 724, 1060 |
| RsaNI | GTAC | 5 cut(s) | 6, 238, 693, 723, 1059 |
| RseI | CAYNNNNRTG | 1 cut(s) | 71 |
| SacI | GAGCTC | 1 cut(s) | 858 |
| SaqAI | TTAA | 4 cut(s) | 507, 786, 998, 1187 |
| SatI | GCNGC | 3 cut(s) | 309, 423, 764 |
| Sau3AI | GATC | 5 cut(s) | 94, 196, 838, 1027, 1101 |
| Sau96I | GGNCC | 2 cut(s) | 228, 1157 |
| ScaI | AGTACT | 1 cut(s) | 724 |
| SchI | GAGTC | 2 cut(s) | 156, 716 |
| SduI | GDGCHC | 3 cut(s) | 78, 858, 1084 |
| SfaNI | GCATC | 2 cut(s) | 978, 1210 |
| SfcI | CTRYAG | 3 cut(s) | 115, 468, 867 |
| SfuI | TTCGAA | 2 cut(s) | 487, 718 |
| SinI | GGWCC | 2 cut(s) | 228, 1157 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 71 |
| SmlI | CTYRAG | 1 cut(s) | 379 |
| SmoI | CTYRAG | 1 cut(s) | 379 |
| SsiI | CCGC | 3 cut(s) | 249, 308, 836 |
| SspI | AATATT | 5 cut(s) | 531, 589, 637, 667, 1204 |
| SspMI | CTAG | 2 cut(s) | 690, 1113 |
| SstI | GAGCTC | 1 cut(s) | 858 |
| StyI | CCWWGG | 1 cut(s) | 303 |
| TaaI | ACNGT | 3 cut(s) | 745, 816, 978 |
| TaiI | ACGT | 1 cut(s) | 1235 |
| TaqI | TCGA | 5 cut(s) | 224, 487, 718, 858, 1100 |
| TatI | WGTACW | 2 cut(s) | 722, 1058 |
| TauI | GCSGC | 1 cut(s) | 311 |
| TfiI | GAWTC | 3 cut(s) | 489, 715, 1366 |
| Tru1I | TTAA | 4 cut(s) | 507, 786, 998, 1187 |
| Tru9I | TTAA | 4 cut(s) | 507, 786, 998, 1187 |
| TscAI | CASTG | 1 cut(s) | 983 |
| TseFI | GTSAC | 3 cut(s) | 51, 399, 871 |
| TseI | GCWGC | 2 cut(s) | 422, 763 |
| Tsp45I | GTSAC | 3 cut(s) | 51, 399, 871 |
| TspDTI | ATGAA | 6 cut(s) | 323, 537, 907, 909, 1037, 1286 |
| TspGWI | ACGGA | 2 cut(s) | 194, 710 |
| TspRI | CASTG | 1 cut(s) | 983 |
| Tth111I | GACNNNGTC | 1 cut(s) | 451 |
| VpaK11BI | GGWCC | 2 cut(s) | 228, 1157 |
| XapI | RAATTY | 3 cut(s) | 502, 779, 1294 |
| XceI | RCATGY | 1 cut(s) | 969 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1322 |
| XspI | CTAG | 2 cut(s) | 690, 1113 |
| ZrmI | AGTACT | 1 cut(s) | 724 |
| Zsp2I | ATGCAT | 1 cut(s) | 971 |