Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

53084017 .. 53084724

Gene Structure 708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG328900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGTGCTAGTACGGAAAATAGGGAGTCTGAGATTCGAAGTACTGAAGGGGCAGTTGTTACAGTAAAATCAATTGGGAAGCTGCGAGATGGTAAGGATTTTTTTAAGAAAGGTCATGGTGAAGGAGAAGCACCATTTGAGTTCAAGAAAGATGCGGATCAAGTGATTGAGGAGCTCGATAAAGCTGTAGTGACAATGAGAAAGGCTATGAAAGATCGCAATGCTTTGAGGTGCTTTGTGAACTGTACTTCAGGAATCTATTTGCGTGCTCTAACAAGTGATAAATCAATCTCCTTCTCTAGTGGATTGGGTGAATTATTGCGTCATGCTTCCTCATTACATTGTCCTCATCTGGATATGCTAATTGAGATTTTAAATGCCATCTCAAATATTCAACACAGGGTTGATGCTTCTCTCACGTCAACTGAACTTTTGTCTTCTTTTATTCCTGTTATTATGGAAACTGATGGAGGAGAGAGGAATTTAGTCATGACAGATGATAGGAAGTCATTCAAAATGGATACTTTGGAGCAGGGAACTGAACCATCTTCTGATTCTTTAGTGGGAAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

191

Amino Acids

20.97

Weight (kDa)

5.42

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	13 - 68	3.3e-06	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	481
AcuI	CTGAAG	2 cut(s)	66, 234
AfaI	GTAC	3 cut(s)	13, 43, 247
AgsI	TTSAA	3 cut(s)	145, 395, 514
AjiI	CACGTC	1 cut(s)	420
AluBI	AGCT	3 cut(s)	82, 175, 185
AluI	AGCT	3 cut(s)	82, 175, 185
Alw21I	GWGCWC	2 cut(s)	177, 271
AlwI	GGATC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	82
ApoI	RAATTY	1 cut(s)	481
Asp700I	GAANNNNTTC	1 cut(s)	509
AsuHPI	GGTGA	2 cut(s)	131, 323
AsuII	TTCGAA	1 cut(s)	37
BanII	GRGCYC	1 cut(s)	177
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	2 cut(s)	177, 271
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	4 cut(s)	83, 389, 461, 553
BciVI	GTATCC	1 cut(s)	514
BfaI	CTAG	2 cut(s)	9, 300
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	1 cut(s)	83
BlsI	GCNGC	1 cut(s)	84
BmcAI	AGTACT	1 cut(s)	43
BmgBI	CACGTC	1 cut(s)	420
BmsI	GCATC	2 cut(s)	142, 397
BpiI	GAAGAC	1 cut(s)	429
Bpu14I	TTCGAA	1 cut(s)	37
BsaBI	GATNNNNATC	1 cut(s)	156
Bse3DI	GCAATG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	156
BseJI	GATNNNNATC	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	226
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	185, 486
BseXI	GCAGC	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	177, 271
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	2 cut(s)	177, 271
Bsp143I	GATC	2 cut(s)	157, 214
BspACI	CCGC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	1 cut(s)	489
BspPI	GGATC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	226
BssMI	GATC	2 cut(s)	157, 214
Bst4CI	ACNGT	2 cut(s)	64, 245
BstBI	TTCGAA	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	30
BstKTI	GATC	2 cut(s)	160, 217
BstMBI	GATC	2 cut(s)	157, 214
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	514
BtrI	CACGTC	1 cut(s)	420
Cac8I	GCNNGC	1 cut(s)	267
CciI	TCATGA	1 cut(s)	489
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	3 cut(s)	12, 42, 246
CviAII	CATG	3 cut(s)	116, 326, 490
CviJI	RGCY	4 cut(s)	82, 175, 185, 206
CviKI_1	RGCY	4 cut(s)	82, 175, 185, 206
CviQI	GTAC	3 cut(s)	12, 42, 246
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	2 cut(s)	159, 216
DpnII	GATC	2 cut(s)	157, 214
DraI	TTTAAA	1 cut(s)	375
Ecl136II	GAGCTC	1 cut(s)	175
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	66, 234
EcoICRI	GAGCTC	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	177
FaeI	CATG	3 cut(s)	119, 329, 493
FaiI	YATR	6 cut(s)	117, 209, 327, 359, 458, 491
FatI	CATG	3 cut(s)	115, 325, 489
Fnu4HI	GCNGC	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	9, 300
GluI	GCNGC	1 cut(s)	83
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	3 cut(s)	119, 329, 493
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	4 cut(s)	26, 34, 255, 554
HphI	GGTGA	2 cut(s)	131, 323
Hpy166II	GTNNAC	2 cut(s)	241, 423
Hpy188I	TCNGA	2 cut(s)	31, 553
Hpy188III	TCNNGA	4 cut(s)	145, 252, 353, 490
Hpy8I	GTNNAC	2 cut(s)	241, 423
HpyAV	CCTTC	3 cut(s)	41, 116, 304
HpyCH4III	ACNGT	2 cut(s)	64, 245
HpyCH4IV	ACGT	1 cut(s)	419
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	3 cut(s)	119, 329, 493
Kzo9I	GATC	2 cut(s)	157, 214
LmnI	GCTCC	2 cut(s)	172, 529
LpnPI	CCDG	5 cut(s)	237, 338, 385, 462, 518
Lsp1109I	GCAGC	1 cut(s)	69
LweI	GCATC	2 cut(s)	142, 397
MaeI	CTAG	2 cut(s)	9, 300
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	2 cut(s)	58, 190
MalI	GATC	2 cut(s)	159, 216
MboI	GATC	2 cut(s)	157, 214
MboII	GAAGA	2 cut(s)	429, 540
MfeI	CAATTG	1 cut(s)	72
MhlI	GDGCHC	2 cut(s)	177, 271
MluCI	AATT	4 cut(s)	72, 314, 363, 481
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	6 cut(s)	163, 222, 343, 357, 464, 471
MroXI	GAANNNNTTC	1 cut(s)	509
MseI	TTAA	3 cut(s)	105, 374, 574
MunI	CAATTG	1 cut(s)	72
NdeII	GATC	2 cut(s)	157, 214
NlaIII	CATG	3 cut(s)	119, 329, 493
NmuCI	GTSAC	1 cut(s)	190
NspV	TTCGAA	1 cut(s)	37
PagI	TCATGA	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	509
PfeI	GAWTC	3 cut(s)	34, 255, 554
PkrI	GCNGC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
Psp124BI	GAGCTC	1 cut(s)	177
RsaI	GTAC	3 cut(s)	13, 43, 247
RsaNI	GTAC	3 cut(s)	12, 42, 246
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	105, 374, 574
SatI	GCNGC	1 cut(s)	83
Sau3AI	GATC	2 cut(s)	157, 214
ScaI	AGTACT	1 cut(s)	43
SchI	GAGTC	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	177, 271
SetI	ASST	6 cut(s)	84, 115, 177, 187, 233, 422
SfaNI	GCATC	2 cut(s)	142, 397
SfcI	CTRYAG	1 cut(s)	186
SfuI	TTCGAA	1 cut(s)	37
Sse9I	AATT	4 cut(s)	72, 314, 363, 481
SsiI	CCGC	1 cut(s)	155
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	2 cut(s)	9, 300
SstI	GAGCTC	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	64, 245
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	2 cut(s)	37, 177
TasI	AATT	4 cut(s)	72, 314, 363, 481
TatI	WGTACW	2 cut(s)	41, 245
TfiI	GAWTC	3 cut(s)	34, 255, 554
Tru1I	TTAA	3 cut(s)	105, 374, 574
Tru9I	TTAA	3 cut(s)	105, 374, 574
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	1 cut(s)	82
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	224
TspGWI	ACGGA	1 cut(s)	29
XapI	RAATTY	1 cut(s)	481
XmnI	GAANNNNTTC	1 cut(s)	509
XspI	CTAG	2 cut(s)	9, 300
ZrmI	AGTACT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.