Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

3640620 .. 3643951

Gene Structure 3332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG019200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCTGAAAAATTGAATATTGTGAGTAATAGCATGGGTGCTAGTACAGGAAATAAGGAGTATGAGATTCAAAGTGCTGAAGGGGCTGTTGTTACAGTAAAATCGATTGGGAAGCTGCGAGATGGTAAGAAATTTTTGAAGAAAGGTCATGGTGAAGGAGAAGCACCATTTGATTTCAAGAAAAACGAGGAGCAAGTGATTGACGAGCTTGAGAAAACTGTAGTGACAATGAGGAAGGTTTTAGATGAAGCAAGTCTTCCTTCTAACTTCATGGATGCTATAATGGATGGTGTCCTTTGCTCAGTAGAGGCCATTACTTGCATCCCACAATGTCTGTATGCCCTGTGTTTAAATAATAATGGTTTTCAGGCTGTGAAAGATGCTTTGAGGTGCTTGGTTGAGGTATTTAATTCAAGAAAATATTTGCGTGCTCTAACAAATGATAAACTGGGTGAATTAATGTTTCATGCTTCCTCATTACATGGTCCTAATGTGGATATATTAATTGAGATTTTAAATGCCATCTCAAATATTGGACACAGGGTTGATGCTTCTCTCACGTCAACTGCAGTTTTGTCTTCTTCTACTCATGTCCCCATAGAAGCTGATGGAGAAGAGAGGAATATAGTCATGACAGATTATAGGGAGTCATCCAAAATGGATAGTTTGGAGCAGGGGATTGAACCATCTTCTGATTCTTTAGTAGGATATGCTGAACTATTACTTCCTGGTTGTGTGAGCAAGGTTGCAAGTCTTCTTGAAACTGTACTTCAGAATGAGTTCAGAGAGGCTTTGAGTTATTTCCAGAAAAACGACCTGGGAGAGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

276

Amino Acids

30.17

Weight (kDa)

4.86

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF913	PF06025	77 - 261	1.8e-23	Domain of Unknown Function (DUF913)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	99, 755
AfaI	GTAC	2 cut(s)	46, 768
AgsI	TTSAA	7 cut(s)	16, 71, 139, 178, 414, 683, 761
AjiI	CACGTC	1 cut(s)	561
AjnI	CCWGG	2 cut(s)	727, 816
AluBI	AGCT	3 cut(s)	115, 208, 605
AluI	AGCT	3 cut(s)	115, 208, 605
Alw21I	GWGCWC	1 cut(s)	433
AoxI	GGCC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	1 cut(s)	131
AseI	ATTAAT	2 cut(s)	458, 503
Asp700I	GAANNNNTTC	1 cut(s)	779
AspS9I	GGNCC	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	164, 464
AvaII	GGWCC	1 cut(s)	485
BbsI	GAAGAC	3 cut(s)	248, 570, 746
Bbv12I	GWGCWC	1 cut(s)	433
BbvI	GCAGC	1 cut(s)	102
BccI	CCATC	5 cut(s)	116, 281, 530, 602, 694
BciT130I	CCWGG	2 cut(s)	729, 818
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	2 cut(s)	219, 567
BisI	GCNGC	1 cut(s)	116
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	729, 818
Bme18I	GGWCC	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	561
BmgT120I	GGNCC	1 cut(s)	485
BmrFI	CCNGG	2 cut(s)	729, 818
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	4 cut(s)	265, 330, 370, 538
BmuI	ACTGGG	1 cut(s)	458
BpiI	GAAGAC	3 cut(s)	248, 570, 746
BpuEI	CTTGAG	1 cut(s)	230
Bsa29I	ATCGAT	1 cut(s)	104
BsaJI	CCNNGG	1 cut(s)	817
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	729, 818
BseCI	ATCGAT	1 cut(s)	104
BseDI	CCNNGG	1 cut(s)	817
BseGI	GGATG	4 cut(s)	280, 292, 321, 650
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	102
BshFI	GGCC	1 cut(s)	311
BshVI	ATCGAT	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	578
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	1 cut(s)	311
Bsp1286I	GDGCHC	1 cut(s)	433
BspANI	GGCC	1 cut(s)	311
BspCNI	CTCAG	1 cut(s)	314
BspDI	ATCGAT	1 cut(s)	104
BspHI	TCATGA	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	817
Bst2UI	CCWGG	2 cut(s)	729, 818
Bst4CI	ACNGT	3 cut(s)	97, 220, 766
Bst6I	CTCTTC	1 cut(s)	609
BstC8I	GCNNGC	1 cut(s)	429
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	4 cut(s)	280, 292, 321, 650
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNI	CCWGG	2 cut(s)	729, 818
BstSCI	CCNGG	2 cut(s)	727, 816
BstSFI	CTRYAG	2 cut(s)	219, 567
BstV1I	GCAGC	1 cut(s)	102
BstV2I	GAAGAC	3 cut(s)	248, 570, 746
Bsu15I	ATCGAT	1 cut(s)	104
BsuRI	GGCC	1 cut(s)	311
BsuTUI	ATCGAT	1 cut(s)	104
BtrI	CACGTC	1 cut(s)	561
BtsCI	GGATG	4 cut(s)	280, 292, 321, 650
Cac8I	GCNNGC	1 cut(s)	429
CciI	TCATGA	1 cut(s)	630
Cfr13I	GGNCC	1 cut(s)	485
ClaI	ATCGAT	1 cut(s)	104
Csp6I	GTAC	2 cut(s)	45, 767
CviAII	CATG	7 cut(s)	34, 149, 271, 467, 482, 590, 631
CviJI	RGCY	8 cut(s)	5, 86, 115, 208, 311, 371, 605, 791
CviKI_1	RGCY	8 cut(s)	5, 86, 115, 208, 311, 371, 605, 791
CviQI	GTAC	2 cut(s)	45, 767
DdeI	CTNAG	1 cut(s)	301
DraI	TTTAAA	2 cut(s)	351, 516
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	2 cut(s)	99, 755
EcoRII	CCWGG	2 cut(s)	727, 816
FaeI	CATG	7 cut(s)	37, 152, 274, 470, 485, 593, 634
FalI	AAGNNNNNCTT	4 cut(s)	240, 272, 244, 276
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	7 cut(s)	33, 148, 270, 466, 481, 589, 630
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	4 cut(s)	287, 299, 308, 637
Fsp4HI	GCNGC	1 cut(s)	116
FspBI	CTAG	1 cut(s)	42
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	311
Hin1II	CATG	7 cut(s)	37, 152, 274, 470, 485, 593, 634
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HinfI	GANTC	3 cut(s)	67, 647, 695
HphI	GGTGA	2 cut(s)	164, 464
Hpy166II	GTNNAC	1 cut(s)	564
Hpy188I	TCNGA	3 cut(s)	694, 774, 785
Hpy188III	TCNNGA	5 cut(s)	178, 414, 631, 758, 805
Hpy8I	GTNNAC	1 cut(s)	564
HpyAV	CCTTC	4 cut(s)	74, 149, 229, 270
HpyCH4III	ACNGT	3 cut(s)	97, 220, 766
HpyCH4IV	ACGT	1 cut(s)	560
HpyCH4V	TGCA	3 cut(s)	321, 569, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	1 cut(s)	560
Hsp92II	CATG	7 cut(s)	37, 152, 274, 470, 485, 593, 634
LmnI	GCTCC	2 cut(s)	190, 670
Lsp1109I	GCAGC	1 cut(s)	102
LweI	GCATC	4 cut(s)	265, 330, 370, 538
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	560
MaeIII	GTNAC	2 cut(s)	91, 223
MboII	GAAGA	7 cut(s)	151, 248, 570, 573, 626, 681, 746
MhlI	GDGCHC	1 cut(s)	433
MluCI	AATT	5 cut(s)	11, 131, 409, 455, 504
MlyI	GAGTC	1 cut(s)	656
MnlI	CCTC	8 cut(s)	181, 225, 301, 381, 394, 484, 612, 781
MroXI	GAANNNNTTC	1 cut(s)	779
MseI	TTAA	5 cut(s)	350, 408, 458, 503, 515
MspR9I	CCNGG	2 cut(s)	729, 818
MvaI	CCWGG	2 cut(s)	729, 818
MwoI	GCNNNNNNNGC	1 cut(s)	83
NlaIII	CATG	7 cut(s)	37, 152, 274, 470, 485, 593, 634
NmuCI	GTSAC	1 cut(s)	223
PagI	TCATGA	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	779
PfeI	GAWTC	2 cut(s)	67, 695
PkrI	GCNGC	1 cut(s)	117
PleI	GAGTC	1 cut(s)	655
PpsI	GAGTC	1 cut(s)	655
PshBI	ATTAAT	2 cut(s)	458, 503
Psp6I	CCWGG	2 cut(s)	727, 816
PspGI	CCWGG	2 cut(s)	727, 816
PspPI	GGNCC	1 cut(s)	485
PstI	CTGCAG	1 cut(s)	571
RsaI	GTAC	2 cut(s)	46, 768
RsaNI	GTAC	2 cut(s)	45, 767
SaqAI	TTAA	5 cut(s)	350, 408, 458, 503, 515
SatI	GCNGC	1 cut(s)	116
Sau96I	GGNCC	1 cut(s)	485
SchI	GAGTC	1 cut(s)	656
ScrFI	CCNGG	2 cut(s)	729, 818
SduI	GDGCHC	1 cut(s)	433
SfaNI	GCATC	4 cut(s)	265, 330, 370, 538
SfcI	CTRYAG	2 cut(s)	219, 567
SinI	GGWCC	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	5 cut(s)	11, 131, 409, 455, 504
SspI	AATATT	3 cut(s)	19, 422, 532
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	727, 816
TaaI	ACNGT	3 cut(s)	97, 220, 766
TaiI	ACGT	1 cut(s)	563
TaqI	TCGA	1 cut(s)	104
TasI	AATT	5 cut(s)	11, 131, 409, 455, 504
TatI	WGTACW	2 cut(s)	44, 766
TfiI	GAWTC	2 cut(s)	67, 695
Tru1I	TTAA	5 cut(s)	350, 408, 458, 503, 515
Tru9I	TTAA	5 cut(s)	350, 408, 458, 503, 515
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	3 cut(s)	259, 261, 455
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	2 cut(s)	458, 503
XapI	RAATTY	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	779
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.