Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Forward (+)

66820986 .. 66824610

Gene Structure 3625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCCATTAGAGGCGTCGATTTCGAGTGGATTTCTGATAGAGTTGATTACACTACAGTGTTTGTTTTACGCTTGTTGATGTTTGCTGATAATGGGCTGGCAGCTGGAATGGATTTACTAAATGCAGTTCTTGGTTTTGTACAAAGAATAGAAGGGCTTCTTGATGCTATTCAGCAGGACTACTTCCCATCTGCCTCCATAGAGGAGAAATTGGATTTCCAGTATTTTGATTCTGGTAAAGTTGATGTTAAGATTTTTCAAGAGTTTCTGGTCCTTGAGAAGATGGAATCTGGAAAGTTTGATTCTGAGATTGTTGCTGTGGCAAATTTGATGCGAGCTGATGATTCGGTGGATGAGCTTGATAGTTACATGTATCAAACTTTATCAGCTATGCAGAATGCATGGGAGTGCCAATGTTCAGAAGGCGAATACAAGGATCCACAAGGCAAGCCTTCTGAGAAGGGTATTTTGATTCCTTCTGTCACTGCTGTATCTTCTGGTGCTATTGCATCAGACTACCAAAGGTTGCGGGTGGAAAGTGTGTGTTCAAGGTCAATTGCCAAATGTGATATAGATGGAGAATCTAGTAAGCTTTATGATGTACGACTTCTTTATGGGAAATCGTTGGCTTGTGTCATCATATCAAGCTATCATCAGCCCCTTCAAGTTCTCATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Diphthami_syn_2 Pkinase Ribonuc_L-PSP

Protein Analysis

225

Amino Acids

25.16

Weight (kDa)

4.41

Isoelectric Point (pI)

38.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	529
AclWI	GGATC	2 cut(s)	431, 444
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	325
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	2 cut(s)	141, 603
AflIII	ACRYGT	1 cut(s)	369
AgsI	TTSAA	3 cut(s)	260, 549, 665
AleI	CACNNNNGTG	1 cut(s)	56
AluBI	AGCT	6 cut(s)	104, 338, 358, 389, 592, 648
AluI	AGCT	6 cut(s)	104, 338, 358, 389, 592, 648
AlwI	GGATC	2 cut(s)	431, 444
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	271
AvaII	GGWCC	1 cut(s)	271
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	436
BbvI	GCAGC	1 cut(s)	113
BccI	CCATC	3 cut(s)	196, 277, 569
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	1 cut(s)	54
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	271
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	438
BmsI	GCATC	3 cut(s)	154, 321, 518
BpuEI	CTTGAG	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	2 cut(s)	297, 447
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	113
BshFI	GGCC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	1 cut(s)	529
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	298, 448
BspLI	GGNNCC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	431, 444
BsrGI	TGTACA	1 cut(s)	139
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	436
BssNI	GRCGYC	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	15
BstAUI	TGTACA	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	99, 336, 449
BstDEI	CTNAG	2 cut(s)	306, 456
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstNSI	RCATGY	1 cut(s)	373
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	1 cut(s)	113
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	358
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	63, 483
Cac8I	GCNNGC	3 cut(s)	99, 336, 449
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	140, 602
CviAII	CATG	3 cut(s)	370, 402, 673
CviQI	GTAC	2 cut(s)	140, 602
DdeI	CTNAG	2 cut(s)	306, 456
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	271
EcoT22I	ATGCAT	1 cut(s)	403
FaeI	CATG	3 cut(s)	373, 405, 676
FaiI	YATR	9 cut(s)	200, 371, 392, 403, 572, 597, 615, 641, 674
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	3 cut(s)	369, 401, 672
FauI	CCCGC	1 cut(s)	522
Fnu4HI	GCNGC	1 cut(s)	102
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	1 cut(s)	102
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	4
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	3 cut(s)	373, 405, 676
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	6 cut(s)	230, 287, 302, 344, 472, 581
Hpy188I	TCNGA	5 cut(s)	37, 307, 421, 457, 514
Hpy188III	TCNNGA	3 cut(s)	161, 260, 291
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	6 cut(s)	146, 416, 454, 462, 486, 671
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	125, 394, 401, 509
HpyF3I	CTNAG	2 cut(s)	306, 456
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	3 cut(s)	373, 405, 676
Kzo9I	GATC	1 cut(s)	436
LpnPI	CCDG	8 cut(s)	83, 90, 161, 219, 233, 254, 276, 483
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	3 cut(s)	154, 321, 518
MaeI	CTAG	1 cut(s)	585
MaeIII	GTNAC	2 cut(s)	365, 481
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	2 cut(s)	292, 486
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	436
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	209, 325, 555
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	3 cut(s)	5, 196, 205
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	156
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	249
MslI	CAYNNNNRTG	2 cut(s)	56, 406
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	104
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	403
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	3 cut(s)	373, 405, 676
NlaIV	GGNNCC	1 cut(s)	438
NmuCI	GTSAC	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	403
NspI	RCATGY	1 cut(s)	373
OliI	CACNNNNGTG	1 cut(s)	56
PciI	ACATGT	1 cut(s)	369
PctI	GAATGC	1 cut(s)	403
PdmI	GAANNNNTTC	1 cut(s)	156
PfeI	GAWTC	6 cut(s)	230, 287, 302, 344, 472, 581
PkrI	GCNGC	1 cut(s)	103
PscI	ACATGT	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	104
RsaI	GTAC	2 cut(s)	141, 603
RsaNI	GTAC	2 cut(s)	140, 602
RseI	CAYNNNNRTG	2 cut(s)	56, 406
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	271
SetI	ASST	8 cut(s)	106, 340, 360, 391, 527, 554, 594, 650
SfaNI	GCATC	3 cut(s)	154, 321, 518
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	2 cut(s)	56, 406
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	3 cut(s)	209, 325, 555
SsiI	CCGC	1 cut(s)	529
SspMI	CTAG	1 cut(s)	585
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	18, 24
TasI	AATT	3 cut(s)	209, 325, 555
TatI	WGTACW	1 cut(s)	139
TfiI	GAWTC	6 cut(s)	230, 287, 302, 344, 472, 581
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	2 cut(s)	63, 490
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	101
Tsp45I	GTSAC	1 cut(s)	481
TspRI	CASTG	2 cut(s)	63, 490
VpaK11BI	GGWCC	1 cut(s)	271
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	156
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.