Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Reverse (-)

5773753 .. 5778326

Gene Structure 4574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00222730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGTTTCATTCACTCTCTTTTCAGTTTTTAGTTGTAATAGAAAAAAGGAAAGAAACTGGAGCTGAAAACAGATTCGATCTGTTTCGATTCGGTGGAGGCGGCGGTGACTATTTGAGTGAGGTTATACGATCAGAGCTATTGTTTTGTACTCTGGACTTTGGCAATGGTGTACCTGTGAAAACTTCGGTGGAGCCTAAAGTATCTGAGGAAGGGCTTCTTGATGCTATTCAGCAGGATTACTTCTCATCTGCCTCCATAGAGAGTTTTGAATTACCTCTTACGGAATCAAAAGGGGTTGGGTCTGAAGGAAAGCCACTAGTCATCATTGATGATTACATAGGCTGCAGTAAGAGCAAATACGATGGTGAAAATTTGTTTTTGGAGTACTTTATGTTTTTGCTACTACTGCTTATGTTATTGCTGGACGCCATTCTAAGATTTGATACGGCTTTCAGGGGTGAGGATGTTATCATAAGGAAGACCAATCTCATTTCTCCTGAGGAGGCTCAGCGGCAAGCTGCTTTGTGGTACTCGCGATGTATAGCTGCACCAGCTCCAGGACAGGCGCATCTTTTACTTCCTGCTAATTCTCCTCAATTCACCAGCAGTTCGATAAGTGGTAAATCAGAAAGGTCACATCTTGAGGTGATCCTTAGATTGCAGCAGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

223

Amino Acids

24.87

Weight (kDa)

4.86

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	535
AciI	CCGC	3 cut(s)	99, 102, 511
AclWI	GGATC	1 cut(s)	643
AcsI	RAATTY	1 cut(s)	370
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	4 cut(s)	148, 171, 386, 530
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	1 cut(s)	269
AhlI	ACTAGT	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	556
AluBI	AGCT	5 cut(s)	62, 136, 518, 545, 554
AluI	AGCT	5 cut(s)	62, 136, 518, 545, 554
AlwI	GGATC	1 cut(s)	643
ApeKI	GCWGC	4 cut(s)	342, 518, 545, 661
ApoI	RAATTY	1 cut(s)	370
Asp700I	GAANNNNTTC	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	568
AsuHPI	GGTGA	5 cut(s)	116, 377, 470, 592, 658
AxyI	CCTNAGG	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	485
BbvI	GCAGC	3 cut(s)	329, 505, 532
BccI	CCATC	1 cut(s)	356
BceAI	ACGGC	1 cut(s)	462
BciT130I	CCWGG	1 cut(s)	558
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	1 cut(s)	317
BfmI	CTRYAG	1 cut(s)	343
BisI	GCNGC	6 cut(s)	100, 343, 512, 519, 546, 662
BlpI	GCTNAGC	1 cut(s)	507
BlsI	GCNGC	6 cut(s)	101, 344, 513, 520, 547, 663
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	558
BmiI	GGNNCC	1 cut(s)	192
BmrFI	CCNGG	1 cut(s)	558
BmsI	GCATC	2 cut(s)	211, 577
BpiI	GAAGAC	1 cut(s)	485
BpmI	CTGGAG	2 cut(s)	78, 540
Bpu1102I	GCTNAGC	1 cut(s)	507
BpuEI	CTTGAG	1 cut(s)	662
BsaHI	GRCGYC	1 cut(s)	426
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	61
Bse21I	CCTNAGG	1 cut(s)	498
Bse3DI	GCAATG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	558
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	195, 489, 521
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	2 cut(s)	515, 582
BseXI	GCAGC	3 cut(s)	329, 505, 532
BsgI	GTGCAG	1 cut(s)	531
Bsh1236I	CGCG	1 cut(s)	535
BslI	CCNNNNNNNGG	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	76, 128, 648
Bsp1720I	GCTNAGC	1 cut(s)	507
Bsp68I	TCGCGA	1 cut(s)	535
BspACI	CCGC	3 cut(s)	99, 102, 511
BspCNI	CTCAG	3 cut(s)	196, 490, 520
BspFNI	CGCG	1 cut(s)	535
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	347
BspPI	GGATC	1 cut(s)	643
BsrDI	GCAATG	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	61
BssMI	GATC	3 cut(s)	76, 128, 648
BssNI	GRCGYC	1 cut(s)	426
Bst2UI	CCWGG	1 cut(s)	558
BstACI	GRCGYC	1 cut(s)	426
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	5 cut(s)	204, 434, 498, 507, 653
BstF5I	GGATG	1 cut(s)	469
BstFNI	CGCG	1 cut(s)	535
BstHHI	GCGC	1 cut(s)	568
BstKTI	GATC	3 cut(s)	79, 131, 651
BstMBI	GATC	3 cut(s)	76, 128, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 406, 551
BstNI	CCWGG	1 cut(s)	558
BstSCI	CCNGG	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	535
BstV1I	GCAGC	3 cut(s)	329, 505, 532
BstV2I	GAAGAC	1 cut(s)	485
Bsu36I	CCTNAGG	1 cut(s)	498
BtgZI	GCGATG	1 cut(s)	550
BtsCI	GGATG	1 cut(s)	469
BtuMI	TCGCGA	1 cut(s)	535
Cac8I	GCNNGC	1 cut(s)	516
CfoI	GCGC	1 cut(s)	568
CseI	GACGC	1 cut(s)	434
Csp6I	GTAC	4 cut(s)	147, 170, 385, 529
CviQI	GTAC	4 cut(s)	147, 170, 385, 529
DdeI	CTNAG	5 cut(s)	204, 434, 498, 507, 653
DpnI	GATC	3 cut(s)	78, 130, 650
DpnII	GATC	3 cut(s)	76, 128, 648
Eco57I	CTGAAG	1 cut(s)	324
Eco81I	CCTNAGG	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	556
FaiI	YATR	7 cut(s)	125, 257, 338, 392, 413, 473, 542
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
Fnu4HI	GCNGC	6 cut(s)	100, 343, 512, 519, 546, 662
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	6 cut(s)	100, 343, 512, 519, 546, 662
FspBI	CTAG	1 cut(s)	317
GlaI	GCGC	1 cut(s)	567
GluI	GCNGC	6 cut(s)	100, 343, 512, 519, 546, 662
GsuI	CTGGAG	2 cut(s)	78, 540
HgaI	GACGC	1 cut(s)	434
HhaI	GCGC	1 cut(s)	568
Hin1I	GRCGYC	1 cut(s)	426
Hin6I	GCGC	1 cut(s)	566
HinP1I	GCGC	1 cut(s)	566
HinfI	GANTC	3 cut(s)	72, 87, 284
HphI	GGTGA	5 cut(s)	116, 377, 470, 592, 658
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	4 cut(s)	133, 205, 304, 628
Hpy188III	TCNNGA	5 cut(s)	152, 218, 497, 534, 641
Hpy8I	GTNNAC	1 cut(s)	170
HpyAV	CCTTC	2 cut(s)	203, 299
HpyCH4V	TGCA	3 cut(s)	345, 548, 661
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 406, 551
HpyF3I	CTNAG	5 cut(s)	204, 434, 498, 507, 653
Hsp92I	GRCGYC	1 cut(s)	426
HspAI	GCGC	1 cut(s)	566
Kzo9I	GATC	3 cut(s)	76, 128, 648
LmnI	GCTCC	3 cut(s)	59, 190, 559
Lsp1109I	GCAGC	3 cut(s)	329, 505, 532
LweI	GCATC	2 cut(s)	211, 577
MaeI	CTAG	1 cut(s)	317
MaeIII	GTNAC	2 cut(s)	104, 633
MalI	GATC	3 cut(s)	78, 130, 650
MboI	GATC	3 cut(s)	76, 128, 648
MboII	GAAGA	1 cut(s)	490
MluCI	AATT	4 cut(s)	269, 370, 586, 596
MroXI	GAANNNNTTC	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	558
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	1 cut(s)	535
MwoI	GCNNNNNNNGC	3 cut(s)	351, 406, 551
NdeII	GATC	3 cut(s)	76, 128, 648
NlaIV	GGNNCC	1 cut(s)	192
NmuCI	GTSAC	2 cut(s)	104, 633
NruI	TCGCGA	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	213
PfeI	GAWTC	3 cut(s)	72, 87, 284
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	6 cut(s)	101, 344, 513, 520, 547, 663
Psp6I	CCWGG	1 cut(s)	556
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	1 cut(s)	192
PstI	CTGCAG	1 cut(s)	347
RruI	TCGCGA	1 cut(s)	535
RsaI	GTAC	4 cut(s)	148, 171, 386, 530
RsaNI	GTAC	4 cut(s)	147, 170, 385, 529
SatI	GCNGC	6 cut(s)	100, 343, 512, 519, 546, 662
Sau3AI	GATC	3 cut(s)	76, 128, 648
ScaI	AGTACT	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	558
SfaNI	GCATC	2 cut(s)	211, 577
SfcI	CTRYAG	1 cut(s)	343
SmlI	CTYRAG	1 cut(s)	641
SmoI	CTYRAG	1 cut(s)	641
SpeI	ACTAGT	1 cut(s)	316
Sse9I	AATT	4 cut(s)	269, 370, 586, 596
SsiI	CCGC	3 cut(s)	99, 102, 511
SspMI	CTAG	1 cut(s)	317
StyD4I	CCNGG	1 cut(s)	556
TaqI	TCGA	3 cut(s)	75, 85, 611
TasI	AATT	4 cut(s)	269, 370, 586, 596
TatI	WGTACW	2 cut(s)	146, 384
TauI	GCSGC	2 cut(s)	102, 514
TfiI	GAWTC	3 cut(s)	72, 87, 284
TseFI	GTSAC	2 cut(s)	104, 633
TseI	GCWGC	4 cut(s)	342, 518, 545, 661
Tsp45I	GTSAC	2 cut(s)	104, 633
TspGWI	ACGGA	1 cut(s)	296
XapI	RAATTY	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	213
XspI	CTAG	1 cut(s)	317
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.