E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411 |
| rosa_laevigata | RLG00000004201 RLG00000004202 RLG00000022917 |
| rosa_multiflora | Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360 |
| rosa_rugosa | Rorug07G0015700 |
| rosa_samantha | Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800 |
| rosa_wichuraiana | Rw7G012230 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 223 |
| AciI | CCGC | 1 cut(s) | 197 |
| AclWI | GGATC | 2 cut(s) | 224, 235 |
| AluBI | AGCT | 1 cut(s) | 155 |
| AluI | AGCT | 1 cut(s) | 155 |
| AlwI | GGATC | 2 cut(s) | 224, 235 |
| ApeKI | GCWGC | 1 cut(s) | 152 |
| AspS9I | GGNCC | 1 cut(s) | 213 |
| AvaII | GGWCC | 1 cut(s) | 213 |
| BbvI | GCAGC | 1 cut(s) | 164 |
| BccI | CCATC | 2 cut(s) | 97, 181 |
| BisI | GCNGC | 1 cut(s) | 153 |
| BlsI | GCNGC | 1 cut(s) | 154 |
| Bme18I | GGWCC | 1 cut(s) | 213 |
| BmgT120I | GGNCC | 1 cut(s) | 213 |
| Bse3DI | GCAATG | 1 cut(s) | 151 |
| BseGI | GGATG | 2 cut(s) | 53, 183 |
| BseMI | GCAATG | 1 cut(s) | 151 |
| BseRI | GAGGAG | 1 cut(s) | 30 |
| BseXI | GCAGC | 1 cut(s) | 164 |
| Bsh1236I | CGCG | 1 cut(s) | 223 |
| Bsp143I | GATC | 2 cut(s) | 229, 240 |
| Bsp68I | TCGCGA | 1 cut(s) | 223 |
| BspACI | CCGC | 1 cut(s) | 197 |
| BspFNI | CGCG | 1 cut(s) | 223 |
| BspPI | GGATC | 2 cut(s) | 224, 235 |
| BsrDI | GCAATG | 1 cut(s) | 151 |
| BssMI | GATC | 2 cut(s) | 229, 240 |
| BstF5I | GGATG | 2 cut(s) | 53, 183 |
| BstFNI | CGCG | 1 cut(s) | 223 |
| BstKTI | GATC | 2 cut(s) | 232, 243 |
| BstMBI | GATC | 2 cut(s) | 229, 240 |
| BstUI | CGCG | 1 cut(s) | 223 |
| BstV1I | GCAGC | 1 cut(s) | 164 |
| BstX2I | RGATCY | 1 cut(s) | 240 |
| BstYI | RGATCY | 1 cut(s) | 240 |
| BtsCI | GGATG | 2 cut(s) | 53, 183 |
| BtuMI | TCGCGA | 1 cut(s) | 223 |
| Cfr13I | GGNCC | 1 cut(s) | 213 |
| CseI | GACGC | 1 cut(s) | 240 |
| CviAII | CATG | 1 cut(s) | 34 |
| CviJI | RGCY | 2 cut(s) | 127, 155 |
| CviKI_1 | RGCY | 2 cut(s) | 127, 155 |
| DpnI | GATC | 2 cut(s) | 231, 242 |
| DpnII | GATC | 2 cut(s) | 229, 240 |
| Eco47I | GGWCC | 1 cut(s) | 213 |
| FaeI | CATG | 1 cut(s) | 37 |
| FaiI | YATR | 3 cut(s) | 35, 124, 256 |
| FatI | CATG | 1 cut(s) | 33 |
| Fnu4HI | GCNGC | 1 cut(s) | 153 |
| FokI | GGATG | 2 cut(s) | 40, 190 |
| Fsp4HI | GCNGC | 1 cut(s) | 153 |
| GluI | GCNGC | 1 cut(s) | 153 |
| HgaI | GACGC | 1 cut(s) | 240 |
| Hin1II | CATG | 1 cut(s) | 37 |
| HinfI | GANTC | 4 cut(s) | 50, 98, 169, 218 |
| Hpy188I | TCNGA | 2 cut(s) | 97, 234 |
| Hpy188III | TCNNGA | 2 cut(s) | 131, 222 |
| HpyCH4V | TGCA | 1 cut(s) | 152 |
| Hsp92II | CATG | 1 cut(s) | 37 |
| Kzo9I | GATC | 2 cut(s) | 229, 240 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| LpnPI | CCDG | 3 cut(s) | 62, 141, 196 |
| Lsp1109I | GCAGC | 1 cut(s) | 164 |
| MaeIII | GTNAC | 1 cut(s) | 206 |
| MalI | GATC | 2 cut(s) | 231, 242 |
| MboI | GATC | 2 cut(s) | 229, 240 |
| MboII | GAAGA | 3 cut(s) | 84, 247, 250 |
| MflI | RGATCY | 1 cut(s) | 240 |
| MlyI | GAGTC | 3 cut(s) | 59, 163, 227 |
| MnlI | CCTC | 2 cut(s) | 8, 15 |
| MspA1I | CMGCKG | 1 cut(s) | 155 |
| MvnI | CGCG | 1 cut(s) | 223 |
| NdeII | GATC | 2 cut(s) | 229, 240 |
| NlaIII | CATG | 1 cut(s) | 37 |
| NmuCI | GTSAC | 1 cut(s) | 206 |
| NruI | TCGCGA | 1 cut(s) | 223 |
| PfeI | GAWTC | 1 cut(s) | 98 |
| PflFI | GACNNNGTC | 1 cut(s) | 217 |
| PkrI | GCNGC | 1 cut(s) | 154 |
| PleI | GAGTC | 3 cut(s) | 58, 163, 226 |
| PpsI | GAGTC | 3 cut(s) | 58, 163, 226 |
| PspPI | GGNCC | 1 cut(s) | 213 |
| PsuI | RGATCY | 1 cut(s) | 240 |
| PsyI | GACNNNGTC | 1 cut(s) | 217 |
| PvuII | CAGCTG | 1 cut(s) | 155 |
| RruI | TCGCGA | 1 cut(s) | 223 |
| SatI | GCNGC | 1 cut(s) | 153 |
| Sau3AI | GATC | 2 cut(s) | 229, 240 |
| Sau96I | GGNCC | 1 cut(s) | 213 |
| SchI | GAGTC | 3 cut(s) | 59, 163, 227 |
| SetI | ASST | 1 cut(s) | 157 |
| SgeI | CNNG | 9 cut(s) | 46, 89, 143, 168, 178, 205, 223, 229, 234 |
| SinI | GGWCC | 1 cut(s) | 213 |
| SsiI | CCGC | 1 cut(s) | 197 |
| TaqI | TCGA | 1 cut(s) | 185 |
| TaqII | GACCGA | 1 cut(s) | 230 |
| TfiI | GAWTC | 1 cut(s) | 98 |
| TseFI | GTSAC | 1 cut(s) | 206 |
| TseI | GCWGC | 1 cut(s) | 152 |
| Tsp45I | GTSAC | 1 cut(s) | 206 |
| Tth111I | GACNNNGTC | 1 cut(s) | 217 |
| VpaK11BI | GGWCC | 1 cut(s) | 213 |