Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003967

Physical Location & Seq

Genomic Coordinates Forward (+)

15124697 .. 15128527

Gene Structure 3831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022917

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGACTGAGGCTCCAAGCTTGAAAGAGAGAAACGGGTATGGAACTGGTGTTGGAAGCAGTGATGGGATAAAGAGCTTTGACTTTAAAATTCCGGAGGAGAGGATCCATGGAGAACCTCTCATGTCACTGTTTGGTGTTGTTACAGTAAAATCAATTGGGAAGCTGCGAGATGGTAAGGAATTTTTTAAGAAAGGTCATGGTGAAGGAGAAGCACCATTTGAGTTCAAGAAAGACGAGGATCAAGTGATTGAGGAGCTCGATAAAGCTGTAGTGACAATGAGAAAGGTTTTAGATGAAGCAAGTCTTCCTTCTAACTTCATGGATGCTATAATGGATGGCGTTCTTTTCTCAATAGAGGCCGTTACATGCATCCCACAGTGCCTATGTGCCCTATGCTTAAATAATAATTGTTTTCAAGCTGTGAAAGGTCGCAATGCTTTGAGGTGCTTTGTGAAGTGTACTTCAGGAACCTATTTGCGTGCTCTAACAAGTGATAAATCAATCTCCTTCTCTAGTGGATTGGGTGAATTATTGCGTCATGCTTCCTCATTACATGGTCCTCATCTGGATATGCTAATTGAGATTTTAAATGCCATCTCAAATATTCGACACAGGGTTGATGCTTCTCTCACGTCAATTGAAATTTTGTCTTCTTCTACTCCTGTCCCTAGGGAAATTGATGGAGAAGAGAGGAATGTAGTCATGACAGATGATATGGAGTCATCCAAAATGGATAGTTTGGAGCAGGGAACTAAACCATCTTCTGATTCTTTAGTAGGAAATGCTGAACTATTGGTTCTTGATTGTGTGAGCAATGTTGCACATCTTCTTGAAACTATACTTCTGAATTGTGACACTTGTCATGTAATTAAGGAGAAGAAGAGGATAGAAGCTTTCTTGCAGTTGCTTACCTTGCTTTTCATGCCTCAATCTGTTTCAGTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0005911 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030054 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

DUF4414 DUF908 DUF913 HECT UBA

Protein Analysis

316

Amino Acids

34.53

Weight (kDa)

5.2

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF913	PF06025	93 - 309	3.7e-29	Domain of Unknown Function (DUF913)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003967)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0101351 RchiOBHm_Chr4g0387901 RchiOBHm_Chr7g0182321 RchiOBHm_Chr7g0194411
rosa_laevigata	RLG00000004201 RLG00000004202 RLG00000022917
rosa_multiflora	Rmu_sc0002837.1_g000001 Rmu_sc0013203.1_g000002
rosa_roxburghii	Rroxscaffold_1G00009390 Rroxscaffold_1G00019360 Rroxscaffold_1G00050800 Rroxscaffold_2G00084810 Rroxscaffold_2G00130580 Rroxscaffold_2G00141360 Rroxscaffold_3G00222730 Rroxscaffold_3G00261360
rosa_rugosa	Rorug07G0015700
rosa_samantha	Rh2AG146200 Rh2AG296300 Rh2BG151600 Rh2CG152200 Rh2DG151700 Rh4AG019200 Rh5BG284100 Rh5BG303900 Rh6AG185400 Rh6AG328900 Rh7AG049900 Rh7AG142900 Rh7BG143400 Rh7CG147200 Rh7DG144800
rosa_wichuraiana	Rw7G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	91
AclWI	GGATC	3 cut(s)	97, 110, 246
AcsI	RAATTY	3 cut(s)	87, 179, 642
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	460
AgsI	TTSAA	5 cut(s)	22, 226, 416, 641, 833
AjiI	CACGTC	1 cut(s)	633
AluBI	AGCT	7 cut(s)	18, 75, 163, 256, 266, 419, 893
AluI	AGCT	7 cut(s)	18, 75, 163, 256, 266, 419, 893
Alw21I	GWGCWC	2 cut(s)	258, 484
AlwI	GGATC	3 cut(s)	97, 110, 246
Aor13HI	TCCGGA	1 cut(s)	91
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	3 cut(s)	87, 179, 642
AspA2I	CCTAGG	1 cut(s)	668
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	2 cut(s)	212, 536
AvaII	GGWCC	1 cut(s)	557
AvrII	CCTAGG	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	258
BbsI	GAAGAC	2 cut(s)	296, 642
Bbv12I	GWGCWC	2 cut(s)	258, 484
BbvI	GCAGC	1 cut(s)	150
BccI	CCATC	6 cut(s)	56, 164, 329, 602, 674, 766
BceAI	ACGGC	1 cut(s)	344
BfaI	CTAG	2 cut(s)	513, 669
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	1 cut(s)	164
BlnI	CCTAGG	1 cut(s)	668
BlsI	GCNGC	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	633
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	3 cut(s)	12, 104, 469
BmsI	GCATC	3 cut(s)	313, 378, 610
BoxI	GACNNNNGTC	1 cut(s)	858
BpiI	GAAGAC	2 cut(s)	296, 642
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BsaJI	CCNNGG	2 cut(s)	106, 668
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	49
Bse3DI	GCAATG	2 cut(s)	439, 820
BseAI	TCCGGA	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	106, 668
BseGI	GGATG	4 cut(s)	328, 340, 369, 722
BseMI	GCAATG	2 cut(s)	439, 820
BseNI	ACTGG	1 cut(s)	49
BseRI	GAGGAG	2 cut(s)	110, 266
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	1 cut(s)	150
BshFI	GGCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	258, 484
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	650
BsmFI	GGGAC	1 cut(s)	650
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	3 cut(s)	258, 391, 484
Bsp13I	TCCGGA	1 cut(s)	91
Bsp143I	GATC	2 cut(s)	102, 238
Bsp19I	CCATGG	1 cut(s)	106
BspANI	GGCC	1 cut(s)	359
BspEI	TCCGGA	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	702
BspLI	GGNNCC	3 cut(s)	12, 104, 469
BspPI	GGATC	3 cut(s)	97, 110, 246
BsrDI	GCAATG	2 cut(s)	439, 820
BsrI	ACTGG	1 cut(s)	49
BssECI	CCNNGG	2 cut(s)	106, 668
BssMI	GATC	2 cut(s)	102, 238
BssT1I	CCWWGG	2 cut(s)	106, 668
Bst4CI	ACNGT	3 cut(s)	129, 145, 378
Bst6I	CTCTTC	2 cut(s)	681, 875
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	106
BstF5I	GGATG	4 cut(s)	328, 340, 369, 722
BstKTI	GATC	2 cut(s)	105, 241
BstMBI	GATC	2 cut(s)	102, 238
BstMWI	GCNNNNNNNGC	2 cut(s)	913, 922
BstNSI	RCATGY	1 cut(s)	369
BstPAI	GACNNNNGTC	1 cut(s)	858
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	150
BstV2I	GAAGAC	2 cut(s)	296, 642
BstX2I	RGATCY	1 cut(s)	102
BstYI	RGATCY	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	1 cut(s)	106
BtrI	CACGTC	1 cut(s)	633
BtsCI	GGATG	4 cut(s)	328, 340, 369, 722
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	3 cut(s)	64, 125, 383
Cac8I	GCNNGC	1 cut(s)	480
CciI	TCATGA	1 cut(s)	702
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	1 cut(s)	459
CviJI	RGCY	9 cut(s)	11, 18, 75, 163, 256, 266, 359, 419, 893
CviKI_1	RGCY	9 cut(s)	11, 18, 75, 163, 256, 266, 359, 419, 893
CviQI	GTAC	1 cut(s)	459
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	104, 240
DpnII	GATC	2 cut(s)	102, 238
DraI	TTTAAA	2 cut(s)	85, 588
Eam1104I	CTCTTC	2 cut(s)	681, 875
EarI	CTCTTC	2 cut(s)	681, 875
Ecl136II	GAGCTC	1 cut(s)	256
Eco130I	CCWWGG	2 cut(s)	106, 668
Eco24I	GRGCYC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	557
Eco53kI	GAGCTC	1 cut(s)	256
Eco57I	CTGAAG	1 cut(s)	447
EcoICRI	GAGCTC	1 cut(s)	256
EcoT14I	CCWWGG	2 cut(s)	106, 668
EcoT22I	ATGCAT	1 cut(s)	371
EcoT38I	GRGCYC	1 cut(s)	258
ErhI	CCWWGG	2 cut(s)	106, 668
FalI	AAGNNNNNCTT	4 cut(s)	288, 320, 292, 324
FaqI	GGGAC	1 cut(s)	650
Fnu4HI	GCNGC	1 cut(s)	164
FokI	GGATG	4 cut(s)	335, 347, 356, 709
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	164
FspBI	CTAG	2 cut(s)	513, 669
GluI	GCNGC	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	524
HindIII	AAGCTT	2 cut(s)	16, 891
HinfI	GANTC	2 cut(s)	719, 767
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	212, 536
Hpy166II	GTNNAC	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	766, 846
Hpy188III	TCNNGA	7 cut(s)	92, 226, 465, 566, 703, 800, 830
Hpy8I	GTNNAC	1 cut(s)	459
HpyAV	CCTTC	3 cut(s)	197, 318, 517
HpyCH4III	ACNGT	3 cut(s)	129, 145, 378
HpyCH4IV	ACGT	1 cut(s)	632
HpyCH4V	TGCA	3 cut(s)	369, 821, 901
HpyF10VI	GCNNNNNNNGC	2 cut(s)	913, 922
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	632
Kpn2I	TCCGGA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	102, 238
LmnI	GCTCC	3 cut(s)	16, 253, 742
LpnPI	CCDG	7 cut(s)	30, 105, 450, 551, 598, 675, 731
Lsp1109I	GCAGC	1 cut(s)	150
LweI	GCATC	3 cut(s)	313, 378, 610
MaeI	CTAG	2 cut(s)	513, 669
MaeII	ACGT	1 cut(s)	632
MaeIII	GTNAC	5 cut(s)	123, 139, 271, 361, 851
MalI	GATC	2 cut(s)	104, 240
MboI	GATC	2 cut(s)	102, 238
MboII	GAAGA	8 cut(s)	296, 642, 645, 698, 753, 818, 889, 892
MfeI	CAATTG	2 cut(s)	153, 636
MflI	RGATCY	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	258, 391, 484
MlyI	GAGTC	1 cut(s)	728
MmeI	TCCRAC	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	371
MroI	TCCGGA	1 cut(s)	91
MseI	TTAA	5 cut(s)	84, 186, 398, 587, 870
MspI	CCGG	1 cut(s)	92
MunI	CAATTG	2 cut(s)	153, 636
MwoI	GCNNNNNNNGC	2 cut(s)	913, 922
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	2 cut(s)	102, 238
NlaIV	GGNNCC	3 cut(s)	12, 104, 469
NmuCI	GTSAC	3 cut(s)	123, 271, 851
NsiI	ATGCAT	1 cut(s)	371
NspI	RCATGY	1 cut(s)	369
PagI	TCATGA	1 cut(s)	702
PfeI	GAWTC	1 cut(s)	767
PkrI	GCNGC	1 cut(s)	165
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	858
Psp124BI	GAGCTC	1 cut(s)	258
PspN4I	GGNNCC	3 cut(s)	12, 104, 469
PspPI	GGNCC	1 cut(s)	557
PsuI	RGATCY	1 cut(s)	102
RsaI	GTAC	1 cut(s)	460
RsaNI	GTAC	1 cut(s)	459
SacI	GAGCTC	1 cut(s)	258
SaqAI	TTAA	5 cut(s)	84, 186, 398, 587, 870
SatI	GCNGC	1 cut(s)	164
Sau3AI	GATC	2 cut(s)	102, 238
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	1 cut(s)	728
SduI	GDGCHC	3 cut(s)	258, 391, 484
SfaNI	GCATC	3 cut(s)	313, 378, 610
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	557
SspI	AATATT	1 cut(s)	604
SspMI	CTAG	2 cut(s)	513, 669
SstI	GAGCTC	1 cut(s)	258
StyI	CCWWGG	2 cut(s)	106, 668
TaaI	ACNGT	3 cut(s)	129, 145, 378
TaiI	ACGT	1 cut(s)	635
TaqI	TCGA	2 cut(s)	258, 607
TatI	WGTACW	1 cut(s)	458
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	5 cut(s)	84, 186, 398, 587, 870
Tru9I	TTAA	5 cut(s)	84, 186, 398, 587, 870
TscAI	CASTG	3 cut(s)	64, 132, 383
TseFI	GTSAC	3 cut(s)	123, 271, 851
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	3 cut(s)	123, 271, 851
TspDTI	ATGAA	3 cut(s)	307, 309, 910
TspRI	CASTG	3 cut(s)	64, 132, 383
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	3 cut(s)	87, 179, 642
XceI	RCATGY	1 cut(s)	369
XmaJI	CCTAGG	1 cut(s)	668
XspI	CTAG	2 cut(s)	513, 669
Zsp2I	ATGCAT	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.